RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W MTC1P47018 478 aaKnown RBP16.51■□□□□ 0.23
SHR3YDL212W DRS1P32892 752 aaKnown RBP16.1■□□□□ 0.17
SHR3YDL212W FAP1P53971 965 aa14.03□□□□□ -0.16
SHR3YDL212W DIP2Q12220 943 aaPredicted RBP13.87□□□□□ -0.19
SHR3YDL212W BFR2Q06631 534 aaKnown RBP13.71□□□□□ -0.21
SHR3YDL212W AVT3P36062 692 aa13.61□□□□□ -0.23
SHR3YDL212W PRI1P10363 409 aa13.53□□□□□ -0.24
SHR3YDL212W ISW2Q08773 1120 aa13.47□□□□□ -0.25
SHR3YDL212W RPG1P38249 964 aaKnown RBP13.36□□□□□ -0.27
SHR3YDL212W AAD16Q02895 342 aa13.33□□□□□ -0.28
SHR3YDL212W RSE1Q04693 1361 aaKnown RBP13.2□□□□□ -0.3
SHR3YDL212W PRY3P47033 881 aa13.18□□□□□ -0.3
SHR3YDL212W TSR3Q12094 313 aaKnown RBP12.85□□□□□ -0.35
SHR3YDL212W RPL17AP05740 184 aaKnown RBP12.75□□□□□ -0.37
SHR3YDL212W RPL17BP46990 184 aaKnown RBP12.75□□□□□ -0.37
SHR3YDL212W YCK3P39962 524 aa12.6□□□□□ -0.39
SHR3YDL212W REB1P21538 810 aa12.59□□□□□ -0.39
SHR3YDL212W TFA1P36100 482 aa12.59□□□□□ -0.39
SHR3YDL212W HAA1Q12753 694 aaKnown RBP12.37□□□□□ -0.43
SHR3YDL212W SPT21P35209 758 aa12.31□□□□□ -0.44
SHR3YDL212W MRPL32P25348 183 aa12.26□□□□□ -0.45
SHR3YDL212W YKR023WP36119 530 aaKnown RBP12.02□□□□□ -0.49
SHR3YDL212W RIM101P33400 625 aa12.01□□□□□ -0.49
SHR3YDL212W CDC27P38042 758 aa11.88□□□□□ -0.51
SHR3YDL212W HOP09932 586 aa11.76□□□□□ -0.53
SHR3YDL212W TFC8Q12308 588 aa11.74□□□□□ -0.53
SHR3YDL212W DCD1P06773 312 aa11.71□□□□□ -0.53
SHR3YDL212W OXP1P28273 1286 aa11.65□□□□□ -0.54
SHR3YDL212W YGL015CP33199 130 aa11.54□□□□□ -0.56
SHR3YDL212W MAP2P38174 421 aaKnown RBP11.4□□□□□ -0.58
SHR3YDL212W BCH2P36122 765 aa11.39□□□□□ -0.59
SHR3YDL212W PTP3P40048 928 aa11.37□□□□□ -0.59
SHR3YDL212W YIL055CP40523 627 aaKnown RBP11.37□□□□□ -0.59
SHR3YDL212W UBP10P53874 792 aaPredicted RBP11.37□□□□□ -0.59
SHR3YDL212W YAH1Q12184 172 aaKnown RBP11.37□□□□□ -0.59
SHR3YDL212W SCY1P53009 804 aa11.29□□□□□ -0.6
SHR3YDL212W RSM7P47150 247 aa11.24□□□□□ -0.61
SHR3YDL212W YLR271WQ06152 274 aa11.24□□□□□ -0.61
SHR3YDL212W SSP1P38871 571 aa11.22□□□□□ -0.61
SHR3YDL212W EPS1P40557 701 aa11.15□□□□□ -0.62
SHR3YDL212W AI2P03876 854 aa11.1□□□□□ -0.63
SHR3YDL212W BDF1P35817 686 aa11.08□□□□□ -0.64
SHR3YDL212W SLX5P32828 619 aaKnown RBP11.06□□□□□ -0.64
SHR3YDL212W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.04□□□□□ -0.64not detected
SHR3YDL212W BBC1P47068 1157 aa11□□□□□ -0.65
SHR3YDL212W PSD2P53037 1138 aaKnown RBP10.99□□□□□ -0.65
SHR3YDL212W CST9Q06032 482 aa10.89□□□□□ -0.67
SHR3YDL212W MGA2P40578 1113 aa10.87□□□□□ -0.67
SHR3YDL212W TIF4632P39936 914 aaKnown RBP10.85□□□□□ -0.67
SHR3YDL212W TGL3P40308 642 aa10.82□□□□□ -0.68
SHR3YDL212W MRM1P25270 412 aa10.74□□□□□ -0.69
SHR3YDL212W RCR1P38212 213 aa10.58□□□□□ -0.72
SHR3YDL212W NSR1P27476 414 aaKnown RBP RIP-Chip data10.57□□□□□ -0.72 RIP-Chip
SHR3YDL212W RTG3P38165 486 aa10.52□□□□□ -0.73
SHR3YDL212W VPS29P38759 282 aa10.52□□□□□ -0.73
SHR3YDL212W YAP5P40574 245 aa10.49□□□□□ -0.73
SHR3YDL212W MST1P07236 462 aa10.48□□□□□ -0.73
SHR3YDL212W YOR238WQ08634 303 aa10.46□□□□□ -0.73
SHR3YDL212W RAM2P29703 316 aa10.42□□□□□ -0.74
SHR3YDL212W YMR1P47147 688 aaKnown RBP RIP-Chip data10.41□□□□□ -0.74not detected
SHR3YDL212W PIB1Q06651 286 aa10.41□□□□□ -0.74
SHR3YDL212W STS1P38637 319 aa10.4□□□□□ -0.74
SHR3YDL212W YFR006WP43590 535 aa10.37□□□□□ -0.75
SHR3YDL212W DBP1P24784 617 aaKnown RBP10.36□□□□□ -0.75
SHR3YDL212W BUD31P25337 157 aaPredicted RBP10.32□□□□□ -0.76
SHR3YDL212W MAK11P20484 414 aaKnown RBP10.25□□□□□ -0.77
SHR3YDL212W YBL029C-AQ3E756 94 aa10.23□□□□□ -0.77
SHR3YDL212W UBP9P39967 754 aa10.22□□□□□ -0.77
SHR3YDL212W VMA1P17255 1071 aaKnown RBP10.21□□□□□ -0.77
SHR3YDL212W GTT3P39996 337 aa10.21□□□□□ -0.77
SHR3YDL212W DMA1P38823 416 aa10.2□□□□□ -0.78
SHR3YDL212W WSC3Q12215 556 aa10.17□□□□□ -0.78
SHR3YDL212W EDS1P38073 919 aa10.14□□□□□ -0.79
SHR3YDL212W VNX1P42839 908 aa10.13□□□□□ -0.79
SHR3YDL212W COQ8P27697 501 aa10.12□□□□□ -0.79
SHR3YDL212W MIF2P35201 549 aa10.11□□□□□ -0.79
SHR3YDL212W SAM3Q08986 587 aa10.11□□□□□ -0.79
SHR3YDL212W YOL036WQ08206 761 aa10.08□□□□□ -0.8
SHR3YDL212W SET4P42948 560 aa10.05□□□□□ -0.8
SHR3YDL212W PTC3P34221 468 aaKnown RBP10.03□□□□□ -0.8
SHR3YDL212W SET1P38827 1080 aaKnown RBP10.03□□□□□ -0.8
SHR3YDL212W SPP1Q03012 353 aa10.02□□□□□ -0.81
SHR3YDL212W MSB4Q12317 492 aa10□□□□□ -0.81
SHR3YDL212W TIF11P38912 153 aaKnown RBP9.99□□□□□ -0.81
SHR3YDL212W GYP5Q12344 894 aa9.99□□□□□ -0.81
SHR3YDL212W RQC2Q12532 1038 aaKnown RBP9.97□□□□□ -0.81
SHR3YDL212W GRE2Q12068 342 aaKnown RBP9.94□□□□□ -0.82
SHR3YDL212W NOP53Q12080 455 aaKnown RBP9.94□□□□□ -0.82
SHR3YDL212W ULI1P43604 169 aa9.93□□□□□ -0.82
SHR3YDL212W DCW1P36091 449 aa9.91□□□□□ -0.82
SHR3YDL212W IOC2Q12072 812 aa9.91□□□□□ -0.82
SHR3YDL212W TRP5P00931 707 aaKnown RBP9.9□□□□□ -0.82
SHR3YDL212W ATH1P48016 1211 aa9.89□□□□□ -0.83
SHR3YDL212W GUT1P32190 709 aa9.88□□□□□ -0.83
SHR3YDL212W EAP1P36041 632 aaKnown RBP9.88□□□□□ -0.83
SHR3YDL212W ABP1P15891 592 aaKnown RBP9.87□□□□□ -0.83
SHR3YDL212W SIS1P25294 352 aaKnown RBP9.85□□□□□ -0.83
SHR3YDL212W YPR148CQ06523 435 aa9.85□□□□□ -0.83
SHR3YDL212W HTA1P04911 132 aaKnown RBP9.84□□□□□ -0.83
SHR3YDL212W HTA2P04912 132 aa9.84□□□□□ -0.83
Retrieved 100 of 5,963 RNA–protein pairs in 38.5 ms