RNA–Protein interactions for RNA: ENSMUST00000115537.1

Col28a1-201, Transcript of Collagen alpha-1(XXVIII) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col28a1, Length 4,230 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1-201ENSMUST00000115537 Dync2h1Q45VK7 4306 aa4.33□□□□□ -1.72
Col28a1-201ENSMUST00000115537 Dync1h1Q9JHU4 4644 aaKnown RBP4.33□□□□□ -1.72
Col28a1-201ENSMUST00000115537 Krtap7-1Q9D3I6 87 aa4.31□□□□□ -1.72
Col28a1-201ENSMUST00000115537 Lrp2A2ARV4 4660 aa4.28□□□□□ -1.72
Col28a1-201ENSMUST00000115537 Krtap3-1A2A591 98 aa4.27□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Gm17416Q30KP4 66 aa4.27□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Lrp1Q91ZX7 4545 aaKnown RBP4.26□□□□□ -1.73
Col28a1-201ENSMUST00000115537 ApobE9Q414 4505 aa4.25□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Ryr2E9Q401 4966 aaKnown RBP4.24□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Lrp1bQ9JI18 4599 aa4.24□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Tnp1P10856 55 aa4.24□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Lce1mQ9CR91 182 aa4.24□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Fat3Q8BNA6 4555 aa4.22□□□□□ -1.73
Col28a1-201ENSMUST00000115537 Fat1A0A1L1SQU7 4645 aa4.21□□□□□ -1.74
Col28a1-201ENSMUST00000115537 Gm19668J3QMD1 248 aa4.19□□□□□ -1.74
Col28a1-201ENSMUST00000115537 Hectd4E9Q2E4 4418 aa4.19□□□□□ -1.74
Col28a1-201ENSMUST00000115537 SacsQ9JLC8 4582 aa4.19□□□□□ -1.74
Col28a1-201ENSMUST00000115537 Gm17402F6Z0L5 76 aa4.18□□□□□ -1.74
Col28a1-201ENSMUST00000115537 Dnah8Q91XQ0 4731 aa4.17□□□□□ -1.74
Col28a1-201ENSMUST00000115537 Dnah2P0C6F1 4456 aa4.15□□□□□ -1.75
Col28a1-201ENSMUST00000115537 Krtap13-1Q8K198 168 aa4.1□□□□□ -1.75
Col28a1-201ENSMUST00000115537 LorP18165 486 aa4.1□□□□□ -1.75
Col28a1-201ENSMUST00000115537 PcloQ9QYX7 5068 aa4.09□□□□□ -1.75
Col28a1-201ENSMUST00000115537 Dnah7cA0A087WR13 4024 aa4.09□□□□□ -1.76
Col28a1-201ENSMUST00000115537 Dnah7aE9Q0T8 4024 aa4.08□□□□□ -1.76
Col28a1-201ENSMUST00000115537 Pkd1O08852 4293 aa4.08□□□□□ -1.76
Col28a1-201ENSMUST00000115537 Dnhd1D3Z2X2 4750 aa4.06□□□□□ -1.76
Col28a1-201ENSMUST00000115537 Abca13Q5SSE9 5034 aa4.06□□□□□ -1.76
Col28a1-201ENSMUST00000115537 Vps13bQ80TY5 3993 aa4.03□□□□□ -1.76
Col28a1-201ENSMUST00000115537 Gm19402J3QJV4 266 aa4.01□□□□□ -1.77
Col28a1-201ENSMUST00000115537 Herc1E9PZP8 4859 aa4□□□□□ -1.77
Col28a1-201ENSMUST00000115537 Birc6O88738 4882 aa3.98□□□□□ -1.77
Col28a1-201ENSMUST00000115537 Prm1P02319 51 aa3.94□□□□□ -1.78
Col28a1-201ENSMUST00000115537 Sprr2a3Q4KL71 83 aa3.92□□□□□ -1.78
Col28a1-201ENSMUST00000115537 Sprr2a1Q9CQK8 83 aa3.92□□□□□ -1.78
Col28a1-201ENSMUST00000115537 Gm7735D3YX18 52 aa3.9□□□□□ -1.79
Col28a1-201ENSMUST00000115537 Ubr4A2AN08 5180 aa3.87□□□□□ -1.79
Col28a1-201ENSMUST00000115537 Kmt2cQ8BRH4 4903 aa3.86□□□□□ -1.79
Col28a1-201ENSMUST00000115537 Pkhd1E9PZ36 4059 aa3.84□□□□□ -1.79
Col28a1-201ENSMUST00000115537 4932415D10RikA0A1W2P6U8 4986 aa3.84□□□□□ -1.8
Col28a1-201ENSMUST00000115537 Mdn1A2ANY6 5589 aaKnown RBP3.81□□□□□ -1.8
Col28a1-201ENSMUST00000115537 Fat2Q5F226 4351 aa3.81□□□□□ -1.8
Col28a1-201ENSMUST00000115537 Krtap1-5A2A590 122 aa3.8□□□□□ -1.8
Col28a1-201ENSMUST00000115537 Gm9789Q8BIG3 52 aa3.8□□□□□ -1.8
Col28a1-201ENSMUST00000115537 Krtap16-3Q8C1I6 86 aa3.78□□□□□ -1.8
Col28a1-201ENSMUST00000115537 Krtap19-3Q925H6 87 aa3.78□□□□□ -1.81
Col28a1-201ENSMUST00000115537 Ush2AQ2QI47 5193 aa3.74□□□□□ -1.81
Col28a1-201ENSMUST00000115537 Krtap1-3A2A588 173 aa3.73□□□□□ -1.81
Col28a1-201ENSMUST00000115537 Krtap1-4Q3V2D6 188 aa3.72□□□□□ -1.81
Col28a1-201ENSMUST00000115537 Krtap19-1Q925H2 87 aa3.72□□□□□ -1.81
Col28a1-201ENSMUST00000115537 4933428G20RikQ9D3X4 101 aa3.71□□□□□ -1.81
Col28a1-201ENSMUST00000115537 Rnf213E9Q555 5152 aaKnown RBP3.71□□□□□ -1.82
Col28a1-201ENSMUST00000115537 Krtap19-9aF8WH65 55 aa3.68□□□□□ -1.82
Col28a1-201ENSMUST00000115537 Krtap12-1Q9Z287 130 aa3.68□□□□□ -1.82
Col28a1-201ENSMUST00000115537 Pkhd1l1Q80ZA4 4249 aa3.67□□□□□ -1.82
Col28a1-201ENSMUST00000115537 Fat4Q2PZL6 4981 aa3.62□□□□□ -1.83
Col28a1-201ENSMUST00000115537 Krtap9-5A2A5X3 358 aa3.61□□□□□ -1.83
Col28a1-201ENSMUST00000115537 Krtap8-1O08633 61 aa3.59□□□□□ -1.83
Col28a1-201ENSMUST00000115537 Gm10061D3Z714 54 aa3.57□□□□□ -1.84
Col28a1-201ENSMUST00000115537 Sprr2kO70562 68 aa3.57□□□□□ -1.84
Col28a1-201ENSMUST00000115537 ZanO88799 5376 aa3.55□□□□□ -1.84
Col28a1-201ENSMUST00000115537 Hmcn2A2AJ76 5100 aa3.52□□□□□ -1.85
Col28a1-201ENSMUST00000115537 Gm11569B1AQB1 180 aa3.51□□□□□ -1.85
Col28a1-201ENSMUST00000115537 2310046K23RikA0A0A6YVW6 87 aa3.49□□□□□ -1.85
Col28a1-201ENSMUST00000115537 Krtap19-2Q925I0 141 aa3.47□□□□□ -1.85
Col28a1-201ENSMUST00000115537 Gm6358A0A087WPH4 74 aa3.46□□□□□ -1.86
Col28a1-201ENSMUST00000115537 Lce1jD3YUU5 139 aa3.44□□□□□ -1.86
Col28a1-201ENSMUST00000115537 Krtap4-2B1AQ85 167 aa3.44□□□□□ -1.86
Col28a1-201ENSMUST00000115537 Krtap19-9bQ99NG9 58 aa3.42□□□□□ -1.86
Col28a1-201ENSMUST00000115537 Fsip2A2ARZ3 6995 aa3.38□□□□□ -1.87
Col28a1-201ENSMUST00000115537 Mt2P02798 61 aa3.35□□□□□ -1.87
Col28a1-201ENSMUST00000115537 Sprr2gO70558 76 aa3.33□□□□□ -1.88
Col28a1-201ENSMUST00000115537 Lce1gQ9D195 139 aa3.33□□□□□ -1.88
Col28a1-201ENSMUST00000115537 Krtap4-6Q3V4B7 195 aa3.33□□□□□ -1.88
Col28a1-201ENSMUST00000115537 Krtap31-2Q8CAY5 177 aa3.32□□□□□ -1.88
Col28a1-201ENSMUST00000115537 Krtap31-1Q9D644 177 aa3.3□□□□□ -1.88
Col28a1-201ENSMUST00000115537 Gm38119A0A0A6YX29 146 aa3.29□□□□□ -1.88
Col28a1-201ENSMUST00000115537 Krtap22-2J3QNX6 67 aa3.27□□□□□ -1.89
Col28a1-201ENSMUST00000115537 Krtap17-1A2A5X6 109 aa3.24□□□□□ -1.89
Col28a1-201ENSMUST00000115537 Syne2Q6ZWQ0 6874 aaKnown RBP3.24□□□□□ -1.89
Col28a1-201ENSMUST00000115537 Muc5bE9Q5I3 4800 aa3.21□□□□□ -1.9
Col28a1-201ENSMUST00000115537 Gm11596B1AQB0 205 aa3.21□□□□□ -1.9
Col28a1-201ENSMUST00000115537 Mt4P47945 62 aa3.21□□□□□ -1.9
Col28a1-201ENSMUST00000115537 Krtap4-1Q3UUY3 169 aa3.2□□□□□ -1.9
Col28a1-201ENSMUST00000115537 Gm11562A0PK51 136 aa3.2□□□□□ -1.9
Col28a1-201ENSMUST00000115537 Syne1Q6ZWR6 8799 aa3.19□□□□□ -1.9
Col28a1-201ENSMUST00000115537 Lce1iQ9D6P5 149 aa3.16□□□□□ -1.9
Col28a1-201ENSMUST00000115537 SspoQ8CG65 4998 aa3.14□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Krtap9-3Q3V2C1 136 aa3.14□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Gm11564A2A4L9 201 aa3.13□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Gm11563B1AQ90 168 aa3.13□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Gm11595B1AQA7 289 aa3.13□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Krtap4-8B1AQA8 209 aa3.13□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Krtap4-9B1AQA9 244 aa3.11□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Lce1a2Q9D1K4 149 aa3.1□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Lce3bQ9CQM7 98 aa3.1□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Lce1hQ9D6R3 140 aa3.1□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Macf1Q9QXZ0 7354 aaKnown RBP3.1□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Gm10100J3QK64 120 aa3.09□□□□□ -1.91
Col28a1-201ENSMUST00000115537 Lce1dQ9D731 133 aa3.08□□□□□ -1.92
Retrieved 100 of 22,080 RNA–protein pairs in 93.9 ms