RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	SHR3	Q02774	210 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	DIG1	Q03063	452 aa	Known RBP	4.56	□□□□□ -1.68
CDC42	YLR229C	VHS3	Q08438	674 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	IES4	Q08561	116 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	AIM41	Q12032	185 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	SLX4	Q12098	748 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	IES3	Q12345	250 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	YGR161W-C	Q3E744	92 aa		4.56	□□□□□ -1.68
CDC42	YLR229C	CDC33	P07260	213 aa	Known RBP	4.55	□□□□□ -1.68
CDC42	YLR229C	TYR1	P20049	452 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	MRPL25	P23369	157 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	EFT1	P32324	842 aa	Known RBP	4.55	□□□□□ -1.68
CDC42	YLR229C	VPH2	P32341	215 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	CBF2	P32504	956 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	TFC4	P33339	1025 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	HSP78	P33416	811 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	DBP7	P36120	742 aa	Known RBP	4.55	□□□□□ -1.68
CDC42	YLR229C	YKR073C	P36153	106 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	TIF5	P38431	405 aa	Known RBP	4.55	□□□□□ -1.68
CDC42	YLR229C	DSS1	P39112	969 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	EAF5	P39995	279 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	NPP2	P39997	493 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	DAS1	P47005	663 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	URB2	P47108	1174 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	HSH155	P49955	971 aa	Known RBP	4.55	□□□□□ -1.68
CDC42	YLR229C	PSP2	P50109	593 aa	Known RBP	4.55	□□□□□ -1.68
CDC42	YLR229C	RTA1	P53047	317 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	SHE10	P53075	577 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	BET4	Q00618	327 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	UTP6	Q02354	440 aa	Known RBP	4.55	□□□□□ -1.68
CDC42	YLR229C	HOT1	Q03213	719 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	YKU80	Q04437	629 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	COQ9	Q05779	260 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	DUS4	Q06063	367 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	YLR177W	Q06251	628 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	ATG17	Q06410	417 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	NKP1	Q12493	238 aa		4.55	□□□□□ -1.68
CDC42	YLR229C	YLR462W	O13556	202 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	RPP2A	P05319	106 aa	Known RBP	4.54	□□□□□ -1.68
CDC42	YLR229C	TOP3	P13099	656 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	ENA1	P13587	1091 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	MVD1	P32377	396 aa	Known RBP	4.54	□□□□□ -1.68
CDC42	YLR229C	PLC1	P32383	869 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YBL055C	P34220	418 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC42	YLR229C	EXO84	P38261	753 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YHL049C	P38722	271 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	TDA11	P38854	504 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	BEM4	P39011	633 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YEL075C	P39972	122 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	FTR1	P40088	404 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YER189W	P40104	122 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	SMX2	P40204	77 aa	Known RBP	4.54	□□□□□ -1.68
CDC42	YLR229C	TOK1	P40310	691 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YTA12	P40341	825 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	RLP7	P40693	322 aa	Known RBP	4.54	□□□□□ -1.68
CDC42	YLR229C	IAH1	P41734	238 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YNL320W	P42840	284 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	TDA10	P42938	290 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YFL064C	P43540	174 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	DAM1	P53267	343 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YNL146W	P53906	100 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	RPA49	Q01080	415 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC42	YLR229C	ENA2	Q01896	1091 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	UGO1	Q03327	502 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YMR321C	Q04898	105 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	RGA2	Q06407	1009 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	IWR1	Q07532	353 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC42	YLR229C	BRE4	Q07660	1125 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	RUP1	Q12242	671 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	OCA6	Q12454	224 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	ENA5	Q12691	1091 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	YBL111C	Q3E7Y5	667 aa		4.54	□□□□□ -1.68
CDC42	YLR229C	RPS9A	O13516	197 aa	Known RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	IME1	P21190	360 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	REC107	P21651	314 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	DAL2	P25335	343 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	RME1	P32338	300 aa	Known RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	DPH2	P32461	534 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	RIP-Chip
CDC42	YLR229C	CSG2	P35206	410 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	LHS1	P36016	881 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	MRX3	P38172	270 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	RRT2	P38332	387 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	HIS2	P38635	335 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	REV7	P38927	245 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	GDH3	P39708	457 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	LCP5	P40079	357 aa	Predicted RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
CDC42	YLR229C	CPR7	P47103	393 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	RPS7B	P48164	190 aa	Known RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	VMA10	P48836	114 aa	Known RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	ASN1	P49089	572 aa	Known RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	ORC5	P50874	479 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	TAF6	P53040	516 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	HOP2	P53187	214 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	CUL3	P53202	744 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	YGR111W	P53265	400 aa		4.53	□□□□□ -1.68
CDC42	YLR229C	LGE1	Q02796	332 aa	Known RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	CEF1	Q03654	590 aa	Predicted RBP	4.53	□□□□□ -1.68
CDC42	YLR229C	USA1	Q03714	838 aa		4.53	□□□□□ -1.68

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