Protein–RNA interactions for Protein: Q01080

RPA49, DNA-directed RNA polymerase I subunit RPA49, yeastyeast

Predicted RBP Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPA49Q01080 YML009W-BYML009W-B 477 nt22.04■■□□□ 1.12
RPA49Q01080 NSR1YGR159C 1245 nt21.87■■□□□ 1.09
RPA49Q01080 NOP1YDL014W 984 nt21.44■■□□□ 1.02
RPA49Q01080 YKL036CYKL036C 393 nt19.78■□□□□ 0.76
RPA49Q01080 MDJ1YFL016C 1536 nt19.41■□□□□ 0.7
RPA49Q01080 Q0297Q0297 156 nt18.73■□□□□ 0.59
RPA49Q01080 SRX1YKL086W 384 nt18.7■□□□□ 0.58
RPA49Q01080 YJL027CYJL027C 417 nt18.48■□□□□ 0.55
RPA49Q01080 SCS3YGL126W 1143 nt17.98■□□□□ 0.47
RPA49Q01080 YCR051WYCR051W 669 nt17.79■□□□□ 0.44
RPA49Q01080 DBP2YNL112W 1641 nt17.14■□□□□ 0.33
RPA49Q01080 YOL085CYOL085C 342 nt17.12■□□□□ 0.33
RPA49Q01080 TRN1tP(UGG)A 72 nt16.88■□□□□ 0.29
RPA49Q01080 SUF9tP(UGG)F 72 nt16.88■□□□□ 0.29
RPA49Q01080 SUF8tP(UGG)H 72 nt16.88■□□□□ 0.29
RPA49Q01080 tP(UGG)LtP(UGG)L 72 nt16.88■□□□□ 0.29
RPA49Q01080 SUF7tP(UGG)M 72 nt16.88■□□□□ 0.29
RPA49Q01080 tP(UGG)N1tP(UGG)N1 72 nt16.88■□□□□ 0.29
RPA49Q01080 tP(UGG)N2tP(UGG)N2 72 nt16.88■□□□□ 0.29
RPA49Q01080 tP(UGG)O1tP(UGG)O1 72 nt16.88■□□□□ 0.29
RPA49Q01080 SUF11tP(UGG)O2 72 nt16.88■□□□□ 0.29
RPA49Q01080 PKP1YIL042C 1185 nt16.88■□□□□ 0.29
RPA49Q01080 RPP1BYDL130W 321 nt16.82■□□□□ 0.28
RPA49Q01080 CCC1YLR220W 969 nt16.78■□□□□ 0.28
RPA49Q01080 YBR190WYBR190W 312 nt16.54■□□□□ 0.24
RPA49Q01080 RTC3YHR087W 336 nt16.23■□□□□ 0.19
RPA49Q01080 RVS167YDR388W 1449 nt16.19■□□□□ 0.18
RPA49Q01080 ATS1YAL020C 1002 nt16.09■□□□□ 0.17
RPA49Q01080 PET122YER153C 765 nt16.07■□□□□ 0.16
RPA49Q01080 SCJ1YMR214W 1134 nt16.05■□□□□ 0.16
RPA49Q01080 tP(UGG)O3tP(UGG)O3 72 nt16■□□□□ 0.15
RPA49Q01080 SCR1SCR1 522 nt15.94■□□□□ 0.14
RPA49Q01080 RRN5YLR141W 1092 nt15.62■□□□□ 0.09
RPA49Q01080 SHR5YOL110W 714 nt15.6■□□□□ 0.09
RPA49Q01080 YDJ1YNL064C 1230 nt15.47■□□□□ 0.07
RPA49Q01080 RSB1YOR049C 1065 nt15.32■□□□□ 0.04
RPA49Q01080 YER088W-BYER088W-B 147 nt15.3■□□□□ 0.04
RPA49Q01080 DEP1YAL013W 1218 nt15.18■□□□□ 0.02
RPA49Q01080 URN1YPR152C 1398 nt15.17■□□□□ 0.02
RPA49Q01080 GAR1YHR089C 618 nt15.15■□□□□ 0.02
RPA49Q01080 PUT4YOR348C 1884 nt14.99□□□□□ -0.01
RPA49Q01080 RPN10YHR200W 807 nt14.96□□□□□ -0.01
RPA49Q01080 YNL208WYNL208W 600 nt14.93□□□□□ -0.02
RPA49Q01080 OPI9YLR338W 858 nt14.92□□□□□ -0.02
RPA49Q01080 PST2YDR032C 597 nt14.89□□□□□ -0.03
RPA49Q01080 SAH1YER043C 1350 nt14.85□□□□□ -0.03
RPA49Q01080 ARE1YCR048W 1833 nt14.72□□□□□ -0.05
RPA49Q01080 TIR1YER011W 765 nt14.63□□□□□ -0.07
RPA49Q01080 POA1YBR022W 534 nt14.56□□□□□ -0.08
RPA49Q01080 YHR049C-AYHR049C-A 297 nt14.55□□□□□ -0.08
RPA49Q01080 PUN1YLR414C 792 nt14.51□□□□□ -0.09
RPA49Q01080 YJR018WYJR018W 363 nt14.47□□□□□ -0.09
RPA49Q01080 SSA1YAL005C 1929 nt14.43□□□□□ -0.1
RPA49Q01080 YKL097CYKL097C 411 nt14.34□□□□□ -0.11
RPA49Q01080 PTC2YER089C 1395 nt14.34□□□□□ -0.11
RPA49Q01080 SHU1YHL006C 453 nt14.29□□□□□ -0.12
RPA49Q01080 BUD23YCR047C 828 nt14.26□□□□□ -0.13
RPA49Q01080 BSC6YOL137W 1494 nt14.22□□□□□ -0.13
RPA49Q01080 RPP2BYDR382W 333 nt14.21□□□□□ -0.13
RPA49Q01080 YJR120WYJR120W 351 nt14.19□□□□□ -0.14
RPA49Q01080 SRB2YHR041C 633 nt14.16□□□□□ -0.14
RPA49Q01080 NAB2YGL122C 1578 nt14.13□□□□□ -0.15
RPA49Q01080 SSA3YBL075C 1950 nt14.13□□□□□ -0.15
RPA49Q01080 YAL037C-BYAL037C-B 975 nt14.09□□□□□ -0.15
RPA49Q01080 WWM1YFL010C 636 nt13.99□□□□□ -0.17
RPA49Q01080 FPR4YLR449W 1179 nt13.97□□□□□ -0.17
RPA49Q01080 INM2YDR287W 879 nt13.96□□□□□ -0.17
RPA49Q01080 DAL1YIR027C 1383 nt13.95□□□□□ -0.18
RPA49Q01080 YGR021WYGR021W 873 nt13.92□□□□□ -0.18
RPA49Q01080 FIS1YIL065C 468 nt13.9□□□□□ -0.18
RPA49Q01080 BDH2YAL061W 1254 nt13.89□□□□□ -0.19
RPA49Q01080 HOM6YJR139C 1080 nt13.84□□□□□ -0.19
RPA49Q01080 YBL100CYBL100C 315 nt13.82□□□□□ -0.2
RPA49Q01080 PHO4YFR034C 939 nt13.81□□□□□ -0.2
RPA49Q01080 MNP1YGL068W 585 nt13.79□□□□□ -0.2
RPA49Q01080 YFL021C-AYFL021C-A 855 nt13.76□□□□□ -0.21
RPA49Q01080 YOR139CYOR139C 393 nt13.73□□□□□ -0.21
RPA49Q01080 LSM3YLR438C-A 270 nt13.72□□□□□ -0.21
RPA49Q01080 NPL3YDR432W 1245 nt13.66□□□□□ -0.22
RPA49Q01080 TRM9YML014W 840 nt13.66□□□□□ -0.22
RPA49Q01080 FUN26YAL022C 1554 nt13.66□□□□□ -0.22
RPA49Q01080 RKM5YLR137W 1104 nt13.65□□□□□ -0.22
RPA49Q01080 SPT5YML010W 3192 nt13.63□□□□□ -0.23
RPA49Q01080 YOL037CYOL037C 354 nt13.57□□□□□ -0.24
RPA49Q01080 YPS1YLR120C 1710 nt13.52□□□□□ -0.25
RPA49Q01080 ALF1YNL148C 765 nt13.5□□□□□ -0.25
RPA49Q01080 CCT6YDR188W 1641 nt13.48□□□□□ -0.25
RPA49Q01080 YDR095CYDR095C 411 nt13.44□□□□□ -0.26
RPA49Q01080 YHR165W-AYHR165W-A 312 nt13.42□□□□□ -0.26
RPA49Q01080 SUF2tP(AGG)C 72 nt13.4□□□□□ -0.26
RPA49Q01080 SUF10tP(AGG)N 72 nt13.4□□□□□ -0.26
RPA49Q01080 MEP2YNL142W 1500 nt13.34□□□□□ -0.27
RPA49Q01080 YLR281CYLR281C 468 nt13.25□□□□□ -0.29
RPA49Q01080 SIS1YNL007C 1059 nt13.24□□□□□ -0.29
RPA49Q01080 WHI5YOR083W 888 nt13.22□□□□□ -0.29
RPA49Q01080 RPP2AYOL039W 321 nt13.21□□□□□ -0.29
RPA49Q01080 tM(CAU)CtM(CAU)C 72 nt13.2□□□□□ -0.3
RPA49Q01080 IMT4tM(CAU)E 72 nt13.2□□□□□ -0.3
RPA49Q01080 IMT3tM(CAU)J3 72 nt13.2□□□□□ -0.3
RPA49Q01080 IMT1tM(CAU)O1 72 nt13.2□□□□□ -0.3
Retrieved 100 of 7,029 protein–RNA pairs in 10.2 ms