RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 Igkv4-58A0A0G2JGI6 119 aa10.42□□□□□ -0.74
Trim39-203ENSMUST00000113706 D130052B06RikQ3UW13 202 aa10.42□□□□□ -0.74
Trim39-203ENSMUST00000113706 Trav14-1A0A0G2JF94 121 aa10.41□□□□□ -0.74
Trim39-203ENSMUST00000113706 Gm10770F7D043 238 aa10.41□□□□□ -0.74
Trim39-203ENSMUST00000113706 Igkv2-109A0A075B5K6 120 aa10.41□□□□□ -0.74
Trim39-203ENSMUST00000113706 Stab2Q8R4U0 2559 aa10.41□□□□□ -0.74
Trim39-203ENSMUST00000113706 Gm7102J3QQ10 178 aa10.41□□□□□ -0.74
Trim39-203ENSMUST00000113706 Pkd1l1Q8R526 2615 aa10.4□□□□□ -0.74
Trim39-203ENSMUST00000113706 Muc6Q80T03 2850 aa10.39□□□□□ -0.75
Trim39-203ENSMUST00000113706 Mrpl52Q9D0Y8 121 aa10.38□□□□□ -0.75
Trim39-203ENSMUST00000113706 Gm20726G3UX18 150 aa10.38□□□□□ -0.75
Trim39-203ENSMUST00000113706 4930519P11RikQ9CUJ8 166 aa10.38□□□□□ -0.75
Trim39-203ENSMUST00000113706 Gm10735Q3US96 136 aa10.37□□□□□ -0.75
Trim39-203ENSMUST00000113706 Gm17577J3QNF7 156 aa10.37□□□□□ -0.75
Trim39-203ENSMUST00000113706 FcgbpE9Q0B5 2583 aa10.36□□□□□ -0.75
Trim39-203ENSMUST00000113706 Ighv10-1A0A0B4J1J6 119 aa10.36□□□□□ -0.75
Trim39-203ENSMUST00000113706 Q9DAA7 145 aa10.36□□□□□ -0.75
Trim39-203ENSMUST00000113706 2310034G01RikA0A286YDL3 209 aa10.35□□□□□ -0.75
Trim39-203ENSMUST00000113706 Tenm2Q9WTS5 2764 aa10.34□□□□□ -0.75
Trim39-203ENSMUST00000113706 Igkv1-88A0A140T8N1 120 aa10.34□□□□□ -0.75
Trim39-203ENSMUST00000113706 Sprr1aQ62266 144 aa10.34□□□□□ -0.75
Trim39-203ENSMUST00000113706 Msrb1Q9JLC3 116 aa10.34□□□□□ -0.75
Trim39-203ENSMUST00000113706 PrkdcP97313 4128 aa10.34□□□□□ -0.75
Trim39-203ENSMUST00000113706 Ighv10-3A0A075B5T6 119 aa10.33□□□□□ -0.76
Trim39-203ENSMUST00000113706 Scgb1b2O35176 93 aa10.33□□□□□ -0.76
Trim39-203ENSMUST00000113706 E130218I03RikA0A0U1RNU5 63 aa10.33□□□□□ -0.76
Trim39-203ENSMUST00000113706 BB014433Q8C5R5 389 aa10.32□□□□□ -0.76
Trim39-203ENSMUST00000113706 Igkv3-12A0A140T8P0 119 aa10.31□□□□□ -0.76
Trim39-203ENSMUST00000113706 Fras1Q80T14 4010 aa10.31□□□□□ -0.76
Trim39-203ENSMUST00000113706 Igkv8-27A0A0G2JF28 120 aa10.31□□□□□ -0.76
Trim39-203ENSMUST00000113706 Igkv8-30A0A140T8M3 121 aa10.31□□□□□ -0.76
Trim39-203ENSMUST00000113706 Cd164Q9R0L9 197 aa10.3□□□□□ -0.76
Trim39-203ENSMUST00000113706 Igkv8-26A0A075B5N5 123 aa10.29□□□□□ -0.76
Trim39-203ENSMUST00000113706 BaalcQ8VHV1 145 aa10.29□□□□□ -0.76
Trim39-203ENSMUST00000113706 Cdk2ap2Q9CPY4 127 aa10.29□□□□□ -0.76
Trim39-203ENSMUST00000113706 Defb11Q8R2I7 77 aa10.29□□□□□ -0.76
Trim39-203ENSMUST00000113706 Smim29Q8R043 75 aa10.28□□□□□ -0.76
Trim39-203ENSMUST00000113706 Gm11627A6PWP4 55 aa10.28□□□□□ -0.76
Trim39-203ENSMUST00000113706 Elof1P60003 83 aa10.28□□□□□ -0.76
Trim39-203ENSMUST00000113706 Defa25Q5G864 92 aa10.26□□□□□ -0.77
Trim39-203ENSMUST00000113706 BC048502Q80Y74 154 aa10.25□□□□□ -0.77
Trim39-203ENSMUST00000113706 Dnah11E9Q7N9 4488 aa10.25□□□□□ -0.77
Trim39-203ENSMUST00000113706 Ntn5Q3UQ22 452 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 Fam168bQ80XQ8 194 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 9530003J23RikQ8BM26 151 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 Gm9507D3Z5T3 223 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 Igf1P05017 153 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 Pou2af1Q64693 256 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 Defb40Q70KL2 73 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 4930535I16RikQ9CUI2 172 aa10.24□□□□□ -0.77
Trim39-203ENSMUST00000113706 PlecQ9QXS1 4691 aaKnown RBP10.23□□□□□ -0.77
Trim39-203ENSMUST00000113706 Defb37Q7TMD2 62 aa10.23□□□□□ -0.77
Trim39-203ENSMUST00000113706 Igkv8-21A0A140T8P7 120 aa10.23□□□□□ -0.77
Trim39-203ENSMUST00000113706 Apoc4Q61268 124 aa10.22□□□□□ -0.77
Trim39-203ENSMUST00000113706 TgO08710 2766 aa10.22□□□□□ -0.77
Trim39-203ENSMUST00000113706 Gm7276Q3TYW4 209 aa10.22□□□□□ -0.77
Trim39-203ENSMUST00000113706 Wfdc6bF6ULY1 148 aa10.22□□□□□ -0.77
Trim39-203ENSMUST00000113706 Lamtor3O88653 124 aa10.22□□□□□ -0.77
Trim39-203ENSMUST00000113706 Igkv3-2A0A075B5P0 119 aa10.21□□□□□ -0.77
Trim39-203ENSMUST00000113706 Gm10308Q9CVR5 141 aa10.21□□□□□ -0.77
Trim39-203ENSMUST00000113706 A730071L15RikQ8C4X0 137 aa10.21□□□□□ -0.78
Trim39-203ENSMUST00000113706 Ormdl1Q921I0 153 aa10.21□□□□□ -0.78
Trim39-203ENSMUST00000113706 Hist1h4aP62806 103 aaKnown RBP10.2□□□□□ -0.78
Trim39-203ENSMUST00000113706 Cystm1Q8K353 104 aa10.2□□□□□ -0.78
Trim39-203ENSMUST00000113706 P84750 121 aa10.19□□□□□ -0.78
Trim39-203ENSMUST00000113706 Gm9918Q8BUR5 174 aa10.19□□□□□ -0.78
Trim39-203ENSMUST00000113706 Dnah9B1AR51 4484 aa10.18□□□□□ -0.78
Trim39-203ENSMUST00000113706 FasnP19096 2504 aaKnown RBP10.18□□□□□ -0.78
Trim39-203ENSMUST00000113706 Obox2E9PXV9 151 aa10.17□□□□□ -0.78
Trim39-203ENSMUST00000113706 Prol1E9PYQ4 312 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Gm10837Q3UTT8 145 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Tmem254aP0DN89 123 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Tmem254bP0DN90 123 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Tmem254cP0DN91 123 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Fam19a5Q91WE9 132 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Dmac1Q9CQ00 111 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Ighv2-5A0A0A6YY69 116 aa10.16□□□□□ -0.78
Trim39-203ENSMUST00000113706 Nupr2Q497P3 102 aa10.15□□□□□ -0.78
Trim39-203ENSMUST00000113706 ScxQ64124 207 aa10.15□□□□□ -0.78
Trim39-203ENSMUST00000113706 SmcpP15265 143 aa10.14□□□□□ -0.79
Trim39-203ENSMUST00000113706 Fam19a1Q7TPG8 133 aa10.14□□□□□ -0.79
Trim39-203ENSMUST00000113706 Igkv1-122A0A140T8M9 119 aa10.13□□□□□ -0.79
Trim39-203ENSMUST00000113706 Inafm2A0A1L1STD6 152 aa10.13□□□□□ -0.79
Trim39-203ENSMUST00000113706 Rbm3O89086 153 aaKnown RBP10.12□□□□□ -0.79
Trim39-203ENSMUST00000113706 Igkv8-28A0A0G2JE47 121 aa10.12□□□□□ -0.79
Trim39-203ENSMUST00000113706 Vpreb2P13373 142 aa10.12□□□□□ -0.79
Trim39-203ENSMUST00000113706 SycnQ8VCK7 134 aa10.12□□□□□ -0.79
Trim39-203ENSMUST00000113706 7530416G11RikJ3QJX6 159 aa10.11□□□□□ -0.79
Trim39-203ENSMUST00000113706 Defa7P50705 93 aa10.11□□□□□ -0.79
Trim39-203ENSMUST00000113706 MplkipQ9D011 178 aa10.11□□□□□ -0.79
Trim39-203ENSMUST00000113706 Ubl5Q9EPV8 73 aa10.11□□□□□ -0.79
Trim39-203ENSMUST00000113706 Defa21Q8C1P2 93 aa10.09□□□□□ -0.79
Trim39-203ENSMUST00000113706 Defa23Q5G866 93 aa10.09□□□□□ -0.79
Trim39-203ENSMUST00000113706 Naa38Q9D2U5 125 aa10.09□□□□□ -0.79
Trim39-203ENSMUST00000113706 Plac8Q9JI48 112 aa10.08□□□□□ -0.8
Trim39-203ENSMUST00000113706 Tmem243B2RVB9 118 aa10.07□□□□□ -0.8
Trim39-203ENSMUST00000113706 Pde6gP09174 87 aa10.07□□□□□ -0.8
Trim39-203ENSMUST00000113706 Zcchc13Q9D548 170 aa10.07□□□□□ -0.8
Trim39-203ENSMUST00000113706 Gm17689B3GLJ4 109 aa10.06□□□□□ -0.8
Trim39-203ENSMUST00000113706 Gm11011D3Z3L9 86 aa10.06□□□□□ -0.8
Retrieved 100 of 22,080 RNA–protein pairs in 54.8 ms