RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 NischQ80TM9 1593 aa32.47■■■□□ 2.79
Trim39-203ENSMUST00000113706 Gm35339A0A140LHH9 1649 aa32.31■■■□□ 2.76
Trim39-203ENSMUST00000113706 Abcc9P70170 1546 aa31.55■■■□□ 2.64
Trim39-203ENSMUST00000113706 Abcc8B2RUS7 1588 aa31.02■■■□□ 2.56
Trim39-203ENSMUST00000113706 Rhox8Q6VSS7 320 aa29.35■■■□□ 2.29
Trim39-203ENSMUST00000113706 ScribQ80U72 1612 aa29.25■■■□□ 2.27
Trim39-203ENSMUST00000113706 Dcaf1Q80TR8 1506 aa28.84■■■□□ 2.21
Trim39-203ENSMUST00000113706 Rtl1Q7M732 1744 aa28.62■■■□□ 2.17
Trim39-203ENSMUST00000113706 Kdm5dQ62240 1548 aa28.55■■■□□ 2.16
Trim39-203ENSMUST00000113706 Rb1cc1Q9ESK9 1588 aa28.43■■■□□ 2.14
Trim39-203ENSMUST00000113706 NacadQ5SWP3 1504 aa28.37■■■□□ 2.13
Trim39-203ENSMUST00000113706 Ccdc180J3QNE4 1664 aa28.16■■■□□ 2.1
Trim39-203ENSMUST00000113706 Baz1aO88379 1555 aa28.08■■■□□ 2.09
Trim39-203ENSMUST00000113706 Sycp2Q9CUU3 1500 aa27.78■■■□□ 2.04
Trim39-203ENSMUST00000113706 Zcchc6Q5BLK4 1491 aaKnown RBP27.76■■■□□ 2.03
Trim39-203ENSMUST00000113706 Crybg2B7ZCC2 1516 aa27.66■■■□□ 2.02
Trim39-203ENSMUST00000113706 Smarca2Q6DIC0 1577 aa27.42■■□□□ 1.98
Trim39-203ENSMUST00000113706 Ccdc136Q3TVA9 1136 aa27.29■■□□□ 1.96
Trim39-203ENSMUST00000113706 BicraF8VPZ9 1578 aa27.26■■□□□ 1.95
Trim39-203ENSMUST00000113706 Cecr2E9Q2Z1 1453 aa26.86■■□□□ 1.89
Trim39-203ENSMUST00000113706 Trim41Q5NCC3 630 aa26.78■■□□□ 1.88
Trim39-203ENSMUST00000113706 Brd4Q9ESU6 1400 aaKnown RBP26.65■■□□□ 1.86
Trim39-203ENSMUST00000113706 HrcG5E8J6 738 aa26.59■■□□□ 1.85
Trim39-203ENSMUST00000113706 Synj1Q8CHC4 1574 aa26.55■■□□□ 1.84
Trim39-203ENSMUST00000113706 Smarca4Q3TKT4 1613 aaKnown RBP26.47■■□□□ 1.83
Trim39-203ENSMUST00000113706 CftrP26361 1476 aa26.42■■□□□ 1.82
Trim39-203ENSMUST00000113706 Cttnbp2B9EJA2 1648 aa26.36■■□□□ 1.81
Trim39-203ENSMUST00000113706 Golga3P55937 1487 aa26.21■■□□□ 1.79
Trim39-203ENSMUST00000113706 Iqgap2Q3UQ44 1575 aa26.17■■□□□ 1.78
Trim39-203ENSMUST00000113706 Cngb1E1AZ71 1325 aa26.16■■□□□ 1.78
Trim39-203ENSMUST00000113706 Atad2bE9Q166 1460 aaKnown RBP26.14■■□□□ 1.78
Trim39-203ENSMUST00000113706 Pds5bQ4VA53 1446 aaKnown RBP26.1■■□□□ 1.77
Trim39-203ENSMUST00000113706 Cep164Q5DU05 1446 aa26.08■■□□□ 1.77
Trim39-203ENSMUST00000113706 Top2bQ64511 1612 aa26.06■■□□□ 1.76
Trim39-203ENSMUST00000113706 Esf1Q3V1V3 845 aaKnown RBP26.05■■□□□ 1.76
Trim39-203ENSMUST00000113706 Rsf1E9PWW9 1441 aaKnown RBP26■■□□□ 1.75
Trim39-203ENSMUST00000113706 Ccdc88bQ4QRL3 1481 aa25.93■■□□□ 1.74
Trim39-203ENSMUST00000113706 Chic1Q8CBW7 227 aa25.9■■□□□ 1.74
Trim39-203ENSMUST00000113706 Cc2d2aQ8CFW7 1633 aa25.83■■□□□ 1.73
Trim39-203ENSMUST00000113706 Wdr62Q3U3T8 1523 aa25.74■■□□□ 1.71
Trim39-203ENSMUST00000113706 Frmpd1A2AKB4 1549 aa25.71■■□□□ 1.71
Trim39-203ENSMUST00000113706 Fmn1Q05860 1466 aa25.64■■□□□ 1.69
Trim39-203ENSMUST00000113706 Ercc6F8VPZ5 1481 aa25.63■■□□□ 1.69
Trim39-203ENSMUST00000113706 Gab3Q8BSM5 595 aa25.52■■□□□ 1.68
Trim39-203ENSMUST00000113706 Unc13aQ4KUS2 1712 aa25.5■■□□□ 1.67
Trim39-203ENSMUST00000113706 Rpgrip1Q9EPQ2 1331 aa25.5■■□□□ 1.67
Trim39-203ENSMUST00000113706 Thoc2B1AZI6 1594 aaKnown RBP25.49■■□□□ 1.67
Trim39-203ENSMUST00000113706 Top2aQ01320 1528 aaKnown RBP25.45■■□□□ 1.67
Trim39-203ENSMUST00000113706 TnnQ80Z71 1560 aa25.45■■□□□ 1.67
Trim39-203ENSMUST00000113706 Ehmt2Q9Z148 1263 aaKnown RBP25.44■■□□□ 1.66
Trim39-203ENSMUST00000113706 Acin1Q9JIX8 1338 aaKnown RBP25.38■■□□□ 1.65
Trim39-203ENSMUST00000113706 Lamc3Q9R0B6 1581 aa25.34■■□□□ 1.65
Trim39-203ENSMUST00000113706 Kif15Q6P9L6 1387 aa25.21■■□□□ 1.63
Trim39-203ENSMUST00000113706 Rapgef2Q8CHG7 1496 aa25.2■■□□□ 1.63
Trim39-203ENSMUST00000113706 Phldb1Q6PDH0 1371 aaKnown RBP25.2■■□□□ 1.62
Trim39-203ENSMUST00000113706 Fam135aQ6NS59 1506 aa25.14■■□□□ 1.62
Trim39-203ENSMUST00000113706 Camsap1A2AHC3 1581 aa25.07■■□□□ 1.6
Trim39-203ENSMUST00000113706 Cep162Q6ZQ06 1403 aa24.99■■□□□ 1.59
Trim39-203ENSMUST00000113706 Ubl4bQ9CQ84 188 aa24.95■■□□□ 1.59
Trim39-203ENSMUST00000113706 Eif4g1Q6NZJ6 1600 aaKnown RBP24.94■■□□□ 1.58
Trim39-203ENSMUST00000113706 Il27Q8K3I6 234 aa24.94■■□□□ 1.58
Trim39-203ENSMUST00000113706 Ccdc18Q640L5 1455 aa24.93■■□□□ 1.58
Trim39-203ENSMUST00000113706 Cux2P70298 1426 aa24.91■■□□□ 1.58
Trim39-203ENSMUST00000113706 Npm2Q80W85 207 aa24.88■■□□□ 1.57
Trim39-203ENSMUST00000113706 PtprkP35822 1457 aa24.88■■□□□ 1.57
Trim39-203ENSMUST00000113706 NrkQ9R0G8 1455 aa24.83■■□□□ 1.57
Trim39-203ENSMUST00000113706 Grin2bQ01097 1482 aa24.83■■□□□ 1.57
Trim39-203ENSMUST00000113706 Shroom4Q1W617 1475 aa24.81■■□□□ 1.56
Trim39-203ENSMUST00000113706 Myt1lP97500 1187 aa24.76■■□□□ 1.55
Trim39-203ENSMUST00000113706 Arhgap35Q91YM2 1499 aa24.75■■□□□ 1.55
Trim39-203ENSMUST00000113706 Dnajc5bQ9CQ94 199 aa24.73■■□□□ 1.55
Trim39-203ENSMUST00000113706 Npm1Q61937 292 aaKnown RBP24.69■■□□□ 1.54
Trim39-203ENSMUST00000113706 Baz1bQ9Z277 1479 aa24.67■■□□□ 1.54
Trim39-203ENSMUST00000113706 LrpprcQ6PB66 1392 aaKnown RBP24.63■■□□□ 1.53
Trim39-203ENSMUST00000113706 Map3k1P53349 1493 aa24.6■■□□□ 1.53
Trim39-203ENSMUST00000113706 PogzQ8BZH4 1409 aaKnown RBP24.58■■□□□ 1.53
Trim39-203ENSMUST00000113706 Mrc2Q64449 1479 aa24.57■■□□□ 1.52
Trim39-203ENSMUST00000113706 Mroh2bQ7M6Y6 1581 aa24.54■■□□□ 1.52
Trim39-203ENSMUST00000113706 Efcab5A0JP43 1406 aa24.53■■□□□ 1.52
Trim39-203ENSMUST00000113706 Duox2A2AQ99 1517 aa24.53■■□□□ 1.52
Trim39-203ENSMUST00000113706 Kif21aQ9QXL2 1672 aa24.5■■□□□ 1.51
Trim39-203ENSMUST00000113706 Dhx29Q6PGC1 1365 aaKnown RBP24.47■■□□□ 1.51
Trim39-203ENSMUST00000113706 Clip1Q922J3 1391 aa24.47■■□□□ 1.51
Trim39-203ENSMUST00000113706 Zeb1Q64318 1117 aa24.45■■□□□ 1.5
Trim39-203ENSMUST00000113706 Samd9lQ69Z37 1561 aa24.42■■□□□ 1.5
Trim39-203ENSMUST00000113706 AqrQ8CFQ3 1481 aaKnown RBP24.41■■□□□ 1.5
Trim39-203ENSMUST00000113706 Crocc2F6XLV1 1638 aa24.39■■□□□ 1.49
Trim39-203ENSMUST00000113706 Eea1Q8BL66 1411 aa24.37■■□□□ 1.49
Trim39-203ENSMUST00000113706 Arap1Q4LDD4 1452 aa24.35■■□□□ 1.49
Trim39-203ENSMUST00000113706 SynmQ70IV5 1561 aa24.32■■□□□ 1.48
Trim39-203ENSMUST00000113706 Ankrd26Q811D2 1581 aa24.29■■□□□ 1.48
Trim39-203ENSMUST00000113706 Setd5Q5XJV7 1441 aa24.29■■□□□ 1.48
Trim39-203ENSMUST00000113706 Erich3F6QRE9 1637 aa24.29■■□□□ 1.48
Trim39-203ENSMUST00000113706 Carmil1Q6EDY6 1374 aa24.27■■□□□ 1.48
Trim39-203ENSMUST00000113706 UbtfP25976 765 aaKnown RBP24.27■■□□□ 1.48
Trim39-203ENSMUST00000113706 Mier1Q5UAK0 511 aa24.27■■□□□ 1.48
Trim39-203ENSMUST00000113706 Arhgef5E9Q7D5 1581 aa24.25■■□□□ 1.47
Trim39-203ENSMUST00000113706 Plekhg3Q4VAC9 1341 aa24.24■■□□□ 1.47
Trim39-203ENSMUST00000113706 Rad54l2Q99NG0 1466 aa24.23■■□□□ 1.47
Trim39-203ENSMUST00000113706 Cux1P53564 1515 aa24.2■■□□□ 1.46
Retrieved 100 of 22,080 RNA–protein pairs in 67.4 ms