Protein–RNA interactions for Protein: A0A140T8N1

Igkv1-88, Immunoglobulin kappa chain variable 1-88 (Fragment), mousemouse

Predictions only

Length 120 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Igkv1-88A0A140T8N1 Gm25239-201ENSMUST00000174915 86 ntBASIC22.42■■□□□ 1.18
Igkv1-88A0A140T8N1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Igkv1-88A0A140T8N1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Igkv1-88A0A140T8N1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Igkv1-88A0A140T8N1 Psd-208ENSMUST00000224556 2034 ntBASIC20.73■□□□□ 0.91
Igkv1-88A0A140T8N1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Igkv1-88A0A140T8N1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Igkv1-88A0A140T8N1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Igkv1-88A0A140T8N1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Igkv1-88A0A140T8N1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Igkv1-88A0A140T8N1 Gm15042-201ENSMUST00000120212 883 ntBASIC20.14■□□□□ 0.81
Igkv1-88A0A140T8N1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Igkv1-88A0A140T8N1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Igkv1-88A0A140T8N1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Igkv1-88A0A140T8N1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Igkv1-88A0A140T8N1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC19.85■□□□□ 0.77
Igkv1-88A0A140T8N1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Igkv1-88A0A140T8N1 Gm15045-201ENSMUST00000117359 883 ntBASIC19.73■□□□□ 0.75
Igkv1-88A0A140T8N1 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Igkv1-88A0A140T8N1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Igkv1-88A0A140T8N1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Igkv1-88A0A140T8N1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Igkv1-88A0A140T8N1 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Igkv1-88A0A140T8N1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Igkv1-88A0A140T8N1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Igkv1-88A0A140T8N1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Igkv1-88A0A140T8N1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Igkv1-88A0A140T8N1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Igkv1-88A0A140T8N1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Igkv1-88A0A140T8N1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Igkv1-88A0A140T8N1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Igkv1-88A0A140T8N1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC19.2■□□□□ 0.66
Igkv1-88A0A140T8N1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
Igkv1-88A0A140T8N1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC19.14■□□□□ 0.65
Igkv1-88A0A140T8N1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Igkv1-88A0A140T8N1 Gm24109-201ENSMUST00000175489 103 ntBASIC19.13■□□□□ 0.65
Igkv1-88A0A140T8N1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Igkv1-88A0A140T8N1 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Igkv1-88A0A140T8N1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Igkv1-88A0A140T8N1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Igkv1-88A0A140T8N1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC18.97■□□□□ 0.63
Igkv1-88A0A140T8N1 Gm10524-201ENSMUST00000181931 1893 ntBASIC18.87■□□□□ 0.61
Igkv1-88A0A140T8N1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Igkv1-88A0A140T8N1 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Igkv1-88A0A140T8N1 Gm23366-201ENSMUST00000175022 89 ntBASIC18.83■□□□□ 0.6
Igkv1-88A0A140T8N1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Igkv1-88A0A140T8N1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC18.8■□□□□ 0.6
Igkv1-88A0A140T8N1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Igkv1-88A0A140T8N1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Igkv1-88A0A140T8N1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Igkv1-88A0A140T8N1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC18.71■□□□□ 0.59
Igkv1-88A0A140T8N1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Igkv1-88A0A140T8N1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Igkv1-88A0A140T8N1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Igkv1-88A0A140T8N1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Igkv1-88A0A140T8N1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Igkv1-88A0A140T8N1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.54■□□□□ 0.56
Igkv1-88A0A140T8N1 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Igkv1-88A0A140T8N1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Igkv1-88A0A140T8N1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Igkv1-88A0A140T8N1 Gm42596-201ENSMUST00000196305 1958 ntBASIC18.42■□□□□ 0.54
Igkv1-88A0A140T8N1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Igkv1-88A0A140T8N1 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Igkv1-88A0A140T8N1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Igkv1-88A0A140T8N1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC18.38■□□□□ 0.53
Igkv1-88A0A140T8N1 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Igkv1-88A0A140T8N1 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Igkv1-88A0A140T8N1 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Igkv1-88A0A140T8N1 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Igkv1-88A0A140T8N1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Igkv1-88A0A140T8N1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Igkv1-88A0A140T8N1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Igkv1-88A0A140T8N1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Igkv1-88A0A140T8N1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Igkv1-88A0A140T8N1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Igkv1-88A0A140T8N1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Igkv1-88A0A140T8N1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Igkv1-88A0A140T8N1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Igkv1-88A0A140T8N1 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Igkv1-88A0A140T8N1 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Igkv1-88A0A140T8N1 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Igkv1-88A0A140T8N1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Igkv1-88A0A140T8N1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Igkv1-88A0A140T8N1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
Igkv1-88A0A140T8N1 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Igkv1-88A0A140T8N1 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Igkv1-88A0A140T8N1 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Igkv1-88A0A140T8N1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC17.94■□□□□ 0.46
Igkv1-88A0A140T8N1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Igkv1-88A0A140T8N1 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Igkv1-88A0A140T8N1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC17.89■□□□□ 0.46
Igkv1-88A0A140T8N1 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Igkv1-88A0A140T8N1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Igkv1-88A0A140T8N1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
Igkv1-88A0A140T8N1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Igkv1-88A0A140T8N1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Igkv1-88A0A140T8N1 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Igkv1-88A0A140T8N1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Igkv1-88A0A140T8N1 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Igkv1-88A0A140T8N1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms