RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 HUWE1Q7Z6Z7 4374 aaKnown RBP3.59□□□□□ -1.84
USP28-207ENST00000538475 CMYA5Q8N3K9 4069 aa3.58□□□□□ -1.84
USP28-207ENST00000538475 DNAH8Q96JB1 4490 aa3.57□□□□□ -1.84
USP28-207ENST00000538475 COL6A5A8TX70 2615 aa3.57□□□□□ -1.84
USP28-207ENST00000538475 TGP01266 2768 aa3.57□□□□□ -1.84
USP28-207ENST00000538475 DNAH10Q8IVF4 4471 aa3.56□□□□□ -1.84
USP28-207ENST00000538475 DNAH9Q9NYC9 4486 aa3.56□□□□□ -1.84
USP28-207ENST00000538475 STAB2Q8WWQ8 2551 aa3.56□□□□□ -1.84
USP28-207ENST00000538475 KRTAP1-4P0C5Y4 121 aa3.56□□□□□ -1.84
USP28-207ENST00000538475 CRIPTQ9P021 101 aa3.56□□□□□ -1.84
USP28-207ENST00000538475 STAB1Q9NY15 2570 aa3.55□□□□□ -1.84
USP28-207ENST00000538475 FLG2Q5D862 2391 aaPredicted RBP3.55□□□□□ -1.84
USP28-207ENST00000538475 DNAH17Q9UFH2 4485 aa3.54□□□□□ -1.84
USP28-207ENST00000538475 MGAM2Q2M2H8 2515 aa3.53□□□□□ -1.84
USP28-207ENST00000538475 LYSTQ99698 3801 aa3.53□□□□□ -1.84
USP28-207ENST00000538475 VPS13DQ5THJ4 4388 aa3.52□□□□□ -1.85
USP28-207ENST00000538475 TPRXLQ17RH7 258 aa3.52□□□□□ -1.85
USP28-207ENST00000538475 COL7A1Q02388 2944 aa3.51□□□□□ -1.85
USP28-207ENST00000538475 PRKDCP78527 4128 aaKnown RBP3.51□□□□□ -1.85
USP28-207ENST00000538475 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
USP28-207ENST00000538475 HECTD4Q9Y4D8 3996 aa3.5□□□□□ -1.85
USP28-207ENST00000538475 DNAH7Q8WXX0 4024 aa3.5□□□□□ -1.85
USP28-207ENST00000538475 FRAS1Q86XX4 4008 aa3.48□□□□□ -1.85
USP28-207ENST00000538475 DNAH6Q9C0G6 4158 aa3.45□□□□□ -1.86
USP28-207ENST00000538475 S4R3F8 94 aa3.44□□□□□ -1.86
USP28-207ENST00000538475 M0QZ58 72 aa3.42□□□□□ -1.86
USP28-207ENST00000538475 DNAH11Q96DT5 4516 aa3.42□□□□□ -1.86
USP28-207ENST00000538475 KRTAP10-5P60370 271 aa3.4□□□□□ -1.87
USP28-207ENST00000538475 KRTAP13-4Q3LI77 160 aa3.4□□□□□ -1.87
USP28-207ENST00000538475 DNAH2Q9P225 4427 aa3.39□□□□□ -1.87
USP28-207ENST00000538475 KRTAP10-1P60331 282 aa3.39□□□□□ -1.87
USP28-207ENST00000538475 CSMD3Q7Z407 3707 aa3.39□□□□□ -1.87
USP28-207ENST00000538475 PLECQ15149 4684 aaKnown RBP3.39□□□□□ -1.87
USP28-207ENST00000538475 FBN3Q75N90 2809 aa3.38□□□□□ -1.87
USP28-207ENST00000538475 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
USP28-207ENST00000538475 A0A0D9SG42 100 aa3.37□□□□□ -1.87
USP28-207ENST00000538475 LUZP6Q538Z0 58 aa3.37□□□□□ -1.87
USP28-207ENST00000538475 C9orf92A6NGG3 77 aa3.36□□□□□ -1.87
USP28-207ENST00000538475 KRTAP12-1P59990 96 aa3.36□□□□□ -1.87
USP28-207ENST00000538475 KRTAP10-12P60413 245 aa3.36□□□□□ -1.87
USP28-207ENST00000538475 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
USP28-207ENST00000538475 C10orf95Q9H7T3 257 aa3.36□□□□□ -1.87
USP28-207ENST00000538475 SACSQ9NZJ4 4579 aa3.35□□□□□ -1.87
USP28-207ENST00000538475 DMBT1Q9UGM3 2413 aaPredicted RBP3.33□□□□□ -1.88
USP28-207ENST00000538475 KRTAP12-2P59991 146 aa3.33□□□□□ -1.88
USP28-207ENST00000538475 KRTAP21-3Q3LHN1 58 aa3.31□□□□□ -1.88
USP28-207ENST00000538475 PP632Q6XCG6 107 aa3.31□□□□□ -1.88
USP28-207ENST00000538475 PLAC4Q8WY50 150 aa3.31□□□□□ -1.88
USP28-207ENST00000538475 DNAH5Q8TE73 4624 aa3.28□□□□□ -1.88
USP28-207ENST00000538475 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
USP28-207ENST00000538475 KRTAP4-4Q9BYR3 166 aa3.26□□□□□ -1.89
USP28-207ENST00000538475 STARD9Q9P2P6 4700 aa3.26□□□□□ -1.89
USP28-207ENST00000538475 PKHD1L1Q86WI1 4243 aa3.26□□□□□ -1.89
USP28-207ENST00000538475 VPS13BQ7Z7G8 4022 aa3.24□□□□□ -1.89
USP28-207ENST00000538475 KRTAP5-9P26371 169 aa3.24□□□□□ -1.89
USP28-207ENST00000538475 KMT2AQ03164 3969 aa3.22□□□□□ -1.89
USP28-207ENST00000538475 LRP1BQ9NZR2 4599 aa3.22□□□□□ -1.89
USP28-207ENST00000538475 PKD1P98161 4303 aa3.22□□□□□ -1.89
USP28-207ENST00000538475 KRTAP10-4P60372 401 aaPredicted RBP3.21□□□□□ -1.9
USP28-207ENST00000538475 A0A1B0GVY2 172 aa3.2□□□□□ -1.9
USP28-207ENST00000538475 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
USP28-207ENST00000538475 LCE3CQ5T5A8 94 aa3.19□□□□□ -1.9
USP28-207ENST00000538475 CAMK2N1Q7Z7J9 78 aa3.19□□□□□ -1.9
USP28-207ENST00000538475 PKHD1P08F94 4074 aa3.19□□□□□ -1.9
USP28-207ENST00000538475 KRTAP10-8P60410 259 aa3.16□□□□□ -1.9
USP28-207ENST00000538475 R4GN34 69 aa3.14□□□□□ -1.91
USP28-207ENST00000538475 APOBP04114 4563 aaKnown RBP3.13□□□□□ -1.91
USP28-207ENST00000538475 TNXBP22105 4242 aa3.12□□□□□ -1.91
USP28-207ENST00000538475 SPRR5A0A1B0GTR4 108 aa3.12□□□□□ -1.91
USP28-207ENST00000538475 FAT2Q9NYQ8 4349 aa3.1□□□□□ -1.91
USP28-207ENST00000538475 LRP1Q07954 4544 aaKnown RBP3.1□□□□□ -1.91
USP28-207ENST00000538475 SMR3BP02814 79 aaPredicted RBP3.09□□□□□ -1.91
USP28-207ENST00000538475 DNHD1Q96M86 4753 aa3.08□□□□□ -1.92
USP28-207ENST00000538475 PRO2289Q9P1D8 64 aa3.08□□□□□ -1.92
USP28-207ENST00000538475 INE1O15225 51 aa3.05□□□□□ -1.92
USP28-207ENST00000538475 DYNC1H1Q14204 4646 aaKnown RBP3.05□□□□□ -1.92
USP28-207ENST00000538475 HSPG2P98160 4391 aa3.05□□□□□ -1.92
USP28-207ENST00000538475 FAT3Q8TDW7 4589 aa3.04□□□□□ -1.92
USP28-207ENST00000538475 FAT1Q14517 4588 aa3.03□□□□□ -1.92
USP28-207ENST00000538475 TNP1P09430 55 aa3.01□□□□□ -1.93
USP28-207ENST00000538475 Q5VSD8 79 aa2.97□□□□□ -1.93
USP28-207ENST00000538475 MT1HL1P0DM35 61 aa2.91□□□□□ -1.94
USP28-207ENST00000538475 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
USP28-207ENST00000538475 HYDINQ4G0P3 5121 aa2.91□□□□□ -1.94
USP28-207ENST00000538475 MYCBP2O75592 4640 aa2.9□□□□□ -1.94
USP28-207ENST00000538475 KRTAP4-3Q9BYR4 195 aa2.89□□□□□ -1.95
USP28-207ENST00000538475 OBSCNQ5VST9 7968 aa2.86□□□□□ -1.95
USP28-207ENST00000538475 FLGP20930 4061 aaPredicted RBP2.86□□□□□ -1.95
USP28-207ENST00000538475 KRTAP19-2Q3LHN2 52 aa2.79□□□□□ -1.96
USP28-207ENST00000538475 LCE3AQ5TA76 89 aa2.76□□□□□ -1.97
USP28-207ENST00000538475 KRTAP8-1Q8IUC2 63 aa2.76□□□□□ -1.97
USP28-207ENST00000538475 SPRR2GQ9BYE4 73 aa2.74□□□□□ -1.97
USP28-207ENST00000538475 LRP2P98164 4655 aa2.74□□□□□ -1.97
USP28-207ENST00000538475 KMT2CQ8NEZ4 4911 aaKnown RBP2.73□□□□□ -1.97
USP28-207ENST00000538475 RYR2Q92736 4967 aa2.72□□□□□ -1.97
USP28-207ENST00000538475 MUC17Q685J3 4493 aa2.72□□□□□ -1.97
USP28-207ENST00000538475 KRTAP5-2Q701N4 177 aa2.71□□□□□ -1.98
USP28-207ENST00000538475 HERC1Q15751 4861 aa2.71□□□□□ -1.98
USP28-207ENST00000538475 KRTAP4-1Q9BYQ7 146 aa2.69□□□□□ -1.98
USP28-207ENST00000538475 RYR1P21817 5038 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms