RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 AEBP2Q6ZN18 517 aaPredicted RBP22.28■■□□□ 1.16
USP28-207ENST00000538475 CHIC1Q5VXU3 224 aa21.59■■□□□ 1.05
USP28-207ENST00000538475 SENP3Q9H4L4 574 aaPredicted RBP19.02■□□□□ 0.64
USP28-207ENST00000538475 PHF23Q9BUL5 403 aaPredicted RBP18.93■□□□□ 0.62
USP28-207ENST00000538475 FOXD1Q16676 465 aa17.69■□□□□ 0.42
USP28-207ENST00000538475 PLPPR3Q6T4P5 718 aa17.48■□□□□ 0.39
USP28-207ENST00000538475 ADRA2BP18089 450 aa16.8■□□□□ 0.28
USP28-207ENST00000538475 PPP6R1Q9UPN7 881 aa16.79■□□□□ 0.28
USP28-207ENST00000538475 MSH5O43196 834 aa16.65■□□□□ 0.26
USP28-207ENST00000538475 PIAS4Q8N2W9 510 aaPredicted RBP16.64■□□□□ 0.25
USP28-207ENST00000538475 POTEDQ86YR6 584 aa16.43■□□□□ 0.22
USP28-207ENST00000538475 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
USP28-207ENST00000538475 PPP4R3CPQ6ZMV5 832 aa15.37■□□□□ 0.05
USP28-207ENST00000538475 MAPK8IP2Q13387 824 aaPredicted RBP15.3■□□□□ 0.04
USP28-207ENST00000538475 DMRT2Q9Y5R5 561 aa15.11■□□□□ 0.01
USP28-207ENST00000538475 CNKSR2Q8WXI2 1034 aa14.99□□□□□ -0.01
USP28-207ENST00000538475 NCBP3Q53F19 620 aaKnown RBP14.95□□□□□ -0.02
USP28-207ENST00000538475 KCNA4P22459 653 aa14.75□□□□□ -0.05
USP28-207ENST00000538475 RNF216Q9NWF9 866 aaPredicted RBP14.74□□□□□ -0.05
USP28-207ENST00000538475 HOXD11P31277 338 aaPredicted RBP14.7□□□□□ -0.06
USP28-207ENST00000538475 NPM3O75607 178 aaKnown RBP14.66□□□□□ -0.06
USP28-207ENST00000538475 DCAF8L1A6NGE4 600 aa14.59□□□□□ -0.07
USP28-207ENST00000538475 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
USP28-207ENST00000538475 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
USP28-207ENST00000538475 RNF39Q9H2S5 420 aa14.16□□□□□ -0.14
USP28-207ENST00000538475 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.11□□□□□ -0.15
USP28-207ENST00000538475 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
USP28-207ENST00000538475 C1QBPQ07021 282 aaKnown RBP13.96□□□□□ -0.17
USP28-207ENST00000538475 SLC4A2P04920 1241 aa13.87□□□□□ -0.19
USP28-207ENST00000538475 U3KPZ7 1027 aaPredicted RBP13.78□□□□□ -0.2
USP28-207ENST00000538475 FOXD4L1Q9NU39 408 aa13.65□□□□□ -0.22
USP28-207ENST00000538475 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.6□□□□□ -0.23
USP28-207ENST00000538475 HNRNPUL2Q1KMD3 747 aaKnown RBP13.6□□□□□ -0.23
USP28-207ENST00000538475 MYCNP04198 464 aaPredicted RBP13.58□□□□□ -0.24
USP28-207ENST00000538475 APLP2Q06481 763 aa13.53□□□□□ -0.24
USP28-207ENST00000538475 SAMD1Q6SPF0 538 aaPredicted RBP13.53□□□□□ -0.24
USP28-207ENST00000538475 ZBTB22O15209 634 aa13.52□□□□□ -0.25
USP28-207ENST00000538475 CAPN15O75808 1086 aa13.5□□□□□ -0.25
USP28-207ENST00000538475 SPINK5Q9NQ38 1064 aaPredicted RBP13.47□□□□□ -0.25
USP28-207ENST00000538475 EHMT2Q96KQ7 1210 aa13.42□□□□□ -0.26
USP28-207ENST00000538475 TRHP20396 242 aaPredicted RBP13.38□□□□□ -0.27
USP28-207ENST00000538475 ZNF219Q9P2Y4 722 aaPredicted RBP13.34□□□□□ -0.27
USP28-207ENST00000538475 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
USP28-207ENST00000538475 DSG3P32926 999 aa13.24□□□□□ -0.29
USP28-207ENST00000538475 ABCB7O75027 752 aa13.2□□□□□ -0.3
USP28-207ENST00000538475 ATXN8OSP0DMR3 200 aa13.19□□□□□ -0.3
USP28-207ENST00000538475 ATF5Q9Y2D1 282 aaPredicted RBP13.19□□□□□ -0.3
USP28-207ENST00000538475 POLA2Q14181 598 aa13.08□□□□□ -0.32
USP28-207ENST00000538475 POTEHQ6S545 545 aa12.87□□□□□ -0.35
USP28-207ENST00000538475 ZBTB12Q9Y330 459 aaPredicted RBP12.87□□□□□ -0.35
USP28-207ENST00000538475 FBLN2P98095 1184 aa12.75□□□□□ -0.37
USP28-207ENST00000538475 RBM42Q9BTD8 480 aaKnown RBP12.68□□□□□ -0.38
USP28-207ENST00000538475 OSCARQ8IYS5 282 aa12.63□□□□□ -0.39
USP28-207ENST00000538475 MKRN4PQ13434 485 aaPredicted RBP12.59□□□□□ -0.39
USP28-207ENST00000538475 SPDYE2BA6NHP3 402 aa12.47□□□□□ -0.41
USP28-207ENST00000538475 SPDYE6P0CI01 402 aa12.47□□□□□ -0.41
USP28-207ENST00000538475 SPDYE2Q495Y8 402 aa12.47□□□□□ -0.41
USP28-207ENST00000538475 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
USP28-207ENST00000538475 ZNF692Q9BU19 519 aaPredicted RBP12.42□□□□□ -0.42
USP28-207ENST00000538475 CHRDL2Q6WN34 429 aa12.41□□□□□ -0.42
USP28-207ENST00000538475 NISCHQ9Y2I1 1504 aa12.4□□□□□ -0.42
USP28-207ENST00000538475 REM2Q8IYK8 340 aaPredicted RBP12.33□□□□□ -0.44
USP28-207ENST00000538475 SSUH2Q9Y2M2 353 aa12.31□□□□□ -0.44
USP28-207ENST00000538475 SPDYE4A6NLX3 237 aa12.28□□□□□ -0.44
USP28-207ENST00000538475 PABPN1Q86U42 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
USP28-207ENST00000538475 PITPNM1O00562 1244 aa12.19□□□□□ -0.46
USP28-207ENST00000538475 SPDYE1Q8NFV5 336 aaPredicted RBP12.18□□□□□ -0.46
USP28-207ENST00000538475 CLEC11AQ9Y240 323 aa12.18□□□□□ -0.46
USP28-207ENST00000538475 FKBP8Q14318 412 aa12.09□□□□□ -0.47
USP28-207ENST00000538475 PIP4P2Q8N4L2 257 aa12.08□□□□□ -0.48
USP28-207ENST00000538475 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
USP28-207ENST00000538475 SP7Q8TDD2 431 aaPredicted RBP12.01□□□□□ -0.49
USP28-207ENST00000538475 STAG3Q9UJ98 1225 aa12.01□□□□□ -0.49
USP28-207ENST00000538475 FXR2P51116 673 aaKnown RBP eCLIP11.98□□□□□ -0.49
USP28-207ENST00000538475 PROM2Q8N271 834 aa11.95□□□□□ -0.5
USP28-207ENST00000538475 HAX1O00165 279 aa11.91□□□□□ -0.5
USP28-207ENST00000538475 PRKAR2AP13861 404 aaKnown RBP11.91□□□□□ -0.5
USP28-207ENST00000538475 CHADLQ6NUI6 762 aa11.85□□□□□ -0.51
USP28-207ENST00000538475 CREBZFQ9NS37 354 aa11.75□□□□□ -0.53
USP28-207ENST00000538475 FBXO3Q9UK99 471 aa11.75□□□□□ -0.53
USP28-207ENST00000538475 PLEKHG5O94827 1062 aa11.72□□□□□ -0.53
USP28-207ENST00000538475 MIER1Q8N108 512 aa11.71□□□□□ -0.53
USP28-207ENST00000538475 FARP1Q9Y4F1 1045 aaPredicted RBP11.71□□□□□ -0.53
USP28-207ENST00000538475 EVX2Q03828 476 aa11.7□□□□□ -0.54
USP28-207ENST00000538475 PLCD3Q8N3E9 789 aa11.68□□□□□ -0.54
USP28-207ENST00000538475 NPM1P06748 294 aaKnown RBP eCLIP11.62□□□□□ -0.55
USP28-207ENST00000538475 C19orf67A6NJJ6 358 aa11.6□□□□□ -0.55
USP28-207ENST00000538475 CD44P16070 742 aaKnown RBP11.56□□□□□ -0.56
USP28-207ENST00000538475 MNX1P50219 401 aaPredicted RBP11.56□□□□□ -0.56
USP28-207ENST00000538475 ZBTB47Q9UFB7 747 aaPredicted RBP11.56□□□□□ -0.56
USP28-207ENST00000538475 VASPP50552 380 aaPredicted RBP11.55□□□□□ -0.56
USP28-207ENST00000538475 PAK3O75914 559 aaPredicted RBP11.51□□□□□ -0.57
USP28-207ENST00000538475 KLHL34Q8N239 644 aa11.49□□□□□ -0.57
USP28-207ENST00000538475 ZRANB1Q9UGI0 708 aa11.47□□□□□ -0.57
USP28-207ENST00000538475 GABBR2O75899 941 aa11.46□□□□□ -0.57
USP28-207ENST00000538475 TSPYL2Q9H2G4 693 aaPredicted RBP11.42□□□□□ -0.58
USP28-207ENST00000538475 RASEFQ8IZ41 740 aa11.37□□□□□ -0.59
USP28-207ENST00000538475 IFNLR1Q8IU57 520 aaPredicted RBP11.35□□□□□ -0.59
USP28-207ENST00000538475 ZNF579Q8NAF0 562 aaKnown RBP11.35□□□□□ -0.59
USP28-207ENST00000538475 NUBP1P53384 320 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms