RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 NBPF19A0A087WUL8 3843 aa0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 PRM1P04553 51 aa0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 DEFB110Q30KQ9 67 aa0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 LAMA3Q16787 3333 aa0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 C5orf42Q9H799 3197 aa0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 MAP1AP78559 2803 aaPredicted RBP0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 NIPBLQ6KC79 2804 aaeCLIP0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 ITPR2Q14571 2701 aa0.58□□□□□ -2.32
HMGB1P46-201ENST00000520062 NBEAL1Q6ZS30 2694 aa0.57□□□□□ -2.32
HMGB1P46-201ENST00000520062 VPS13BQ7Z7G8 4022 aa0.57□□□□□ -2.32
HMGB1P46-201ENST00000520062 STAB2Q8WWQ8 2551 aa0.57□□□□□ -2.32
HMGB1P46-201ENST00000520062 RELNP78509 3460 aa0.57□□□□□ -2.32
HMGB1P46-201ENST00000520062 KMT2AQ03164 3969 aa0.56□□□□□ -2.32
HMGB1P46-201ENST00000520062 TRIOO75962 3097 aa0.56□□□□□ -2.32
HMGB1P46-201ENST00000520062 KRTAP8-1Q8IUC2 63 aa0.56□□□□□ -2.32
HMGB1P46-201ENST00000520062 LAMA5O15230 3695 aa0.56□□□□□ -2.32
HMGB1P46-201ENST00000520062 VPS13DQ5THJ4 4388 aa0.56□□□□□ -2.32
HMGB1P46-201ENST00000520062 MGAM2Q2M2H8 2515 aa0.56□□□□□ -2.32
HMGB1P46-201ENST00000520062 LAMA1P25391 3075 aa0.55□□□□□ -2.32
HMGB1P46-201ENST00000520062 PHGR1C9JFL3 82 aa0.55□□□□□ -2.32
HMGB1P46-201ENST00000520062 SPTBN5Q9NRC6 3674 aaKnown RBP0.54□□□□□ -2.32
HMGB1P46-201ENST00000520062 HUWE1Q7Z6Z7 4374 aaKnown RBP0.54□□□□□ -2.32
HMGB1P46-201ENST00000520062 DEFB124Q8NES8 71 aa0.54□□□□□ -2.32
HMGB1P46-201ENST00000520062 DYNC2H1Q8NCM8 4307 aaKnown RBP0.54□□□□□ -2.32
HMGB1P46-201ENST00000520062 CEP295Q9C0D2 2601 aa0.53□□□□□ -2.32
HMGB1P46-201ENST00000520062 CENPEQ02224 2701 aa0.53□□□□□ -2.32
HMGB1P46-201ENST00000520062 CUBNO60494 3623 aa0.53□□□□□ -2.32
HMGB1P46-201ENST00000520062 SPRR2DP22532 72 aa0.53□□□□□ -2.32
HMGB1P46-201ENST00000520062 SACSQ9NZJ4 4579 aa0.53□□□□□ -2.33
HMGB1P46-201ENST00000520062 CSMD1Q96PZ7 3565 aa0.52□□□□□ -2.33
HMGB1P46-201ENST00000520062 APELAP0DMC3 54 aa0.52□□□□□ -2.33
HMGB1P46-201ENST00000520062 SPRR2BP35325 72 aa0.52□□□□□ -2.33
HMGB1P46-201ENST00000520062 FLGP20930 4061 aaPredicted RBP0.52□□□□□ -2.33
HMGB1P46-201ENST00000520062 DNAH3Q8TD57 4116 aa0.52□□□□□ -2.33
HMGB1P46-201ENST00000520062 TLN1Q9Y490 2541 aaKnown RBP0.52□□□□□ -2.33
HMGB1P46-201ENST00000520062 LAMA2P24043 3122 aaKnown RBP0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 SMG1Q96Q15 3661 aaKnown RBP0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 A0A096LNI7 61 aa0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 MT1AP04731 61 aa0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 COL6A3P12111 3177 aa0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 HTN1P15515 57 aa0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 Q9Y3F1 56 aa0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 DNAH11Q96DT5 4516 aa0.51□□□□□ -2.33
HMGB1P46-201ENST00000520062 FREM2Q5SZK8 3169 aa0.5□□□□□ -2.33
HMGB1P46-201ENST00000520062 PKD1P98161 4303 aa0.49□□□□□ -2.33
HMGB1P46-201ENST00000520062 MKI67P46013 3256 aaKnown RBP0.49□□□□□ -2.33
HMGB1P46-201ENST00000520062 BOD1L1Q8NFC6 3051 aa0.49□□□□□ -2.33
HMGB1P46-201ENST00000520062 SYNE1Q8NF91 8797 aaKnown RBP0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 AKAP9Q99996 3911 aa0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 SPRR2AP35326 72 aa0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 DEFB1P60022 68 aa0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 RPS29P62273 56 aaKnown RBP0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 WDFY4Q6ZS81 3184 aa0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 CEP350Q5VT06 3117 aa0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 MYCBP2O75592 4640 aa0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 AHNAKQ09666 5890 aaKnown RBP0.48□□□□□ -2.33
HMGB1P46-201ENST00000520062 MUC5BQ9HC84 5762 aaPredicted RBP0.47□□□□□ -2.33
HMGB1P46-201ENST00000520062 MYO9AB2RTY4 2548 aa0.47□□□□□ -2.33
HMGB1P46-201ENST00000520062 PKHD1L1Q86WI1 4243 aa0.47□□□□□ -2.33
HMGB1P46-201ENST00000520062 DEFB136Q30KP8 78 aa0.47□□□□□ -2.33
HMGB1P46-201ENST00000520062 ANK3Q12955 4377 aaKnown RBP0.47□□□□□ -2.33
HMGB1P46-201ENST00000520062 MUC3AQ02505 3323 aa0.47□□□□□ -2.33
HMGB1P46-201ENST00000520062 HECTD4Q9Y4D8 3996 aa0.47□□□□□ -2.33
HMGB1P46-201ENST00000520062 SZT2Q5T011 3432 aa0.46□□□□□ -2.34
HMGB1P46-201ENST00000520062 DNAH8Q96JB1 4490 aa0.46□□□□□ -2.34
HMGB1P46-201ENST00000520062 DNAH2Q9P225 4427 aa0.46□□□□□ -2.34
HMGB1P46-201ENST00000520062 HSPG2P98160 4391 aa0.46□□□□□ -2.34
HMGB1P46-201ENST00000520062 DEFB133Q30KQ1 61 aa0.46□□□□□ -2.34
HMGB1P46-201ENST00000520062 XIRP2A4UGR9 3374 aa0.46□□□□□ -2.34
HMGB1P46-201ENST00000520062 SVEP1Q4LDE5 3571 aa0.46□□□□□ -2.34
HMGB1P46-201ENST00000520062 DNAH7Q8WXX0 4024 aa0.45□□□□□ -2.34
HMGB1P46-201ENST00000520062 DCHS1Q96JQ0 3298 aa0.45□□□□□ -2.34
HMGB1P46-201ENST00000520062 SRCAPQ6ZRS2 3230 aa0.45□□□□□ -2.34
HMGB1P46-201ENST00000520062 DMDP11532 3685 aa0.44□□□□□ -2.34
HMGB1P46-201ENST00000520062 SMR3BP02814 79 aaPredicted RBP0.44□□□□□ -2.34
HMGB1P46-201ENST00000520062 CD52P31358 61 aa0.43□□□□□ -2.34
HMGB1P46-201ENST00000520062 KRTAP19-5Q3LI72 72 aa0.43□□□□□ -2.34
HMGB1P46-201ENST00000520062 LINC01556Q5JQF7 62 aa0.43□□□□□ -2.34
HMGB1P46-201ENST00000520062 COX14Q96I36 57 aa0.43□□□□□ -2.34
HMGB1P46-201ENST00000520062 LRP1Q07954 4544 aaKnown RBP0.43□□□□□ -2.34
HMGB1P46-201ENST00000520062 DNAH6Q9C0G6 4158 aa0.42□□□□□ -2.34
HMGB1P46-201ENST00000520062 SPRR2EP22531 72 aa0.42□□□□□ -2.34
HMGB1P46-201ENST00000520062 CSMD2Q7Z408 3487 aa0.42□□□□□ -2.34
HMGB1P46-201ENST00000520062 CMYA5Q8N3K9 4069 aa0.41□□□□□ -2.34
HMGB1P46-201ENST00000520062 MDN1Q9NU22 5596 aa0.41□□□□□ -2.34
HMGB1P46-201ENST00000520062 KRTAP6-2Q3LI66 62 aa0.41□□□□□ -2.34
HMGB1P46-201ENST00000520062 SPRR2FQ96RM1 72 aa0.41□□□□□ -2.34
HMGB1P46-201ENST00000520062 GPR98Q8WXG9 6306 aa0.41□□□□□ -2.34
HMGB1P46-201ENST00000520062 DNAH9Q9NYC9 4486 aa0.4□□□□□ -2.34
HMGB1P46-201ENST00000520062 STATHP02808 62 aa0.4□□□□□ -2.35
HMGB1P46-201ENST00000520062 DEFB108BQ8NET1 73 aa0.4□□□□□ -2.35
HMGB1P46-201ENST00000520062 DNAH1Q9P2D7 4330 aa0.39□□□□□ -2.35
HMGB1P46-201ENST00000520062 LOC400499M0QZD8 3231 aa0.39□□□□□ -2.35
HMGB1P46-201ENST00000520062 LPAP08519 4548 aa0.38□□□□□ -2.35
HMGB1P46-201ENST00000520062 A0A096LPF7 62 aa0.38□□□□□ -2.35
HMGB1P46-201ENST00000520062 PKHD1P08F94 4074 aa0.38□□□□□ -2.35
HMGB1P46-201ENST00000520062 ASPMQ8IZT6 3477 aa0.38□□□□□ -2.35
HMGB1P46-201ENST00000520062 CFAP47Q6ZTR5 3102 aa0.38□□□□□ -2.35
HMGB1P46-201ENST00000520062 EYSQ5T1H1 3165 aa0.37□□□□□ -2.35
HMGB1P46-201ENST00000520062 FAT4Q6V0I7 4981 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms