RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 DNAH1Q9P2D7 4330 aa6.89□□□□□ -1.31
COL17A1-202ENST00000369733 ALMS1Q8TCU4 4167 aa6.87□□□□□ -1.31
COL17A1-202ENST00000369733 LCE3AQ5TA76 89 aa6.83□□□□□ -1.32
COL17A1-202ENST00000369733 DNAH10Q8IVF4 4471 aa6.82□□□□□ -1.32
COL17A1-202ENST00000369733 KRTAP12-3P60328 96 aa6.8□□□□□ -1.32
COL17A1-202ENST00000369733 PLECQ15149 4684 aaKnown RBP6.79□□□□□ -1.32
COL17A1-202ENST00000369733 DNAH5Q8TE73 4624 aa6.77□□□□□ -1.33
COL17A1-202ENST00000369733 KRTAP4-5Q9BYR2 181 aa6.76□□□□□ -1.33
COL17A1-202ENST00000369733 DNAH17Q9UFH2 4485 aa6.74□□□□□ -1.33
COL17A1-202ENST00000369733 DNAH11Q96DT5 4516 aa6.72□□□□□ -1.33
COL17A1-202ENST00000369733 DNAH2Q9P225 4427 aa6.67□□□□□ -1.34
COL17A1-202ENST00000369733 VPS13DQ5THJ4 4388 aa6.66□□□□□ -1.34
COL17A1-202ENST00000369733 DNAH8Q96JB1 4490 aa6.61□□□□□ -1.35
COL17A1-202ENST00000369733 DNAH3Q8TD57 4116 aa6.59□□□□□ -1.35
COL17A1-202ENST00000369733 CRCT1Q9UGL9 99 aa6.55□□□□□ -1.36
COL17A1-202ENST00000369733 KRTAP4-1Q9BYQ7 146 aa6.48□□□□□ -1.37
COL17A1-202ENST00000369733 STARD9Q9P2P6 4700 aa6.45□□□□□ -1.38
COL17A1-202ENST00000369733 SACSQ9NZJ4 4579 aa6.44□□□□□ -1.38
COL17A1-202ENST00000369733 ANK2Q01484 3957 aa6.44□□□□□ -1.38
COL17A1-202ENST00000369733 DYNC1H1Q14204 4646 aaKnown RBP6.42□□□□□ -1.38
COL17A1-202ENST00000369733 LRP1BQ9NZR2 4599 aa6.42□□□□□ -1.38
COL17A1-202ENST00000369733 DYNC2H1Q8NCM8 4307 aaKnown RBP6.38□□□□□ -1.39
COL17A1-202ENST00000369733 FAT1Q14517 4588 aa6.38□□□□□ -1.39
COL17A1-202ENST00000369733 SPRR2GQ9BYE4 73 aa6.29□□□□□ -1.4
COL17A1-202ENST00000369733 FAT2Q9NYQ8 4349 aa6.28□□□□□ -1.4
COL17A1-202ENST00000369733 FRAS1Q86XX4 4008 aa6.27□□□□□ -1.41
COL17A1-202ENST00000369733 VPS13BQ7Z7G8 4022 aa6.27□□□□□ -1.41
COL17A1-202ENST00000369733 KMT2AQ03164 3969 aa6.25□□□□□ -1.41
COL17A1-202ENST00000369733 KRTAP10-5P60370 271 aa6.24□□□□□ -1.41
COL17A1-202ENST00000369733 APOBP04114 4563 aaKnown RBP6.22□□□□□ -1.41
COL17A1-202ENST00000369733 MT1HP80294 61 aa6.2□□□□□ -1.42
COL17A1-202ENST00000369733 MT2AP02795 61 aa6.18□□□□□ -1.42
COL17A1-202ENST00000369733 DNHD1Q96M86 4753 aa6.18□□□□□ -1.42
COL17A1-202ENST00000369733 PRKDCP78527 4128 aaKnown RBP6.11□□□□□ -1.43
COL17A1-202ENST00000369733 KRTAP8-1Q8IUC2 63 aa6.1□□□□□ -1.43
COL17A1-202ENST00000369733 HECTD4Q9Y4D8 3996 aa6.1□□□□□ -1.43
COL17A1-202ENST00000369733 MT1FP04733 61 aa6.09□□□□□ -1.43
COL17A1-202ENST00000369733 RYR1P21817 5038 aa6.08□□□□□ -1.44
COL17A1-202ENST00000369733 LYSTQ99698 3801 aa6.07□□□□□ -1.44
COL17A1-202ENST00000369733 CMYA5Q8N3K9 4069 aa6.07□□□□□ -1.44
COL17A1-202ENST00000369733 KRTAP19-5Q3LI72 72 aa6.06□□□□□ -1.44
COL17A1-202ENST00000369733 LCE3CQ5T5A8 94 aa6.04□□□□□ -1.44
COL17A1-202ENST00000369733 MYCBP2O75592 4640 aa6.03□□□□□ -1.44
COL17A1-202ENST00000369733 DNAH7Q8WXX0 4024 aa6.02□□□□□ -1.45
COL17A1-202ENST00000369733 DNAH6Q9C0G6 4158 aa6.01□□□□□ -1.45
COL17A1-202ENST00000369733 FAT3Q8TDW7 4589 aa5.96□□□□□ -1.46
COL17A1-202ENST00000369733 SPRR5A0A1B0GTR4 108 aa5.9□□□□□ -1.46
COL17A1-202ENST00000369733 KRTAP19-1Q8IUB9 90 aa5.89□□□□□ -1.47
COL17A1-202ENST00000369733 LRP1Q07954 4544 aaKnown RBP5.86□□□□□ -1.47
COL17A1-202ENST00000369733 KRTAP10-7P60409 375 aaPredicted RBP5.85□□□□□ -1.47
COL17A1-202ENST00000369733 KRTAP17-1Q9BYP8 105 aa5.85□□□□□ -1.47
COL17A1-202ENST00000369733 RYR3Q15413 4870 aa5.82□□□□□ -1.48
COL17A1-202ENST00000369733 KRTAP19-8Q3LI54 63 aa5.81□□□□□ -1.48
COL17A1-202ENST00000369733 KRTAP19-4Q3LI73 84 aa5.75□□□□□ -1.49
COL17A1-202ENST00000369733 MT1XP80297 61 aa5.75□□□□□ -1.49
COL17A1-202ENST00000369733 RYR2Q92736 4967 aa5.71□□□□□ -1.5
COL17A1-202ENST00000369733 KIAA1109Q2LD37 5005 aa5.69□□□□□ -1.5
COL17A1-202ENST00000369733 MT1BP07438 61 aa5.64□□□□□ -1.51
COL17A1-202ENST00000369733 HYDINQ4G0P3 5121 aa5.62□□□□□ -1.51
COL17A1-202ENST00000369733 LRP2P98164 4655 aa5.61□□□□□ -1.51
COL17A1-202ENST00000369733 SPRR2FQ96RM1 72 aa5.61□□□□□ -1.51
COL17A1-202ENST00000369733 KRTAP9-8Q9BYQ0 159 aa5.55□□□□□ -1.52
COL17A1-202ENST00000369733 HSPG2P98160 4391 aa5.53□□□□□ -1.52
COL17A1-202ENST00000369733 PKHD1P08F94 4074 aa5.53□□□□□ -1.52
COL17A1-202ENST00000369733 PKHD1L1Q86WI1 4243 aa5.52□□□□□ -1.53
COL17A1-202ENST00000369733 KRTAP12-4P60329 112 aa5.52□□□□□ -1.53
COL17A1-202ENST00000369733 PKD1P98161 4303 aa5.49□□□□□ -1.53
COL17A1-202ENST00000369733 LCE2CQ5TA81 110 aa5.49□□□□□ -1.53
COL17A1-202ENST00000369733 LCE3BQ5TA77 95 aa5.47□□□□□ -1.53
COL17A1-202ENST00000369733 LPAP08519 4548 aa5.46□□□□□ -1.53
COL17A1-202ENST00000369733 KRTAP4-8A0A0G2JLE6 195 aa5.46□□□□□ -1.54
COL17A1-202ENST00000369733 KRTAP4-8Q9BYQ9 185 aa5.46□□□□□ -1.54
COL17A1-202ENST00000369733 MT1GP13640 62 aa5.45□□□□□ -1.54
COL17A1-202ENST00000369733 TNXBP22105 4242 aa5.42□□□□□ -1.54
COL17A1-202ENST00000369733 KRTAP9-3Q9BYQ3 159 aa5.4□□□□□ -1.55
COL17A1-202ENST00000369733 KMT2CQ8NEZ4 4911 aaKnown RBP5.39□□□□□ -1.55
COL17A1-202ENST00000369733 HERC1Q15751 4861 aa5.38□□□□□ -1.55
COL17A1-202ENST00000369733 KRTAP19-2Q3LHN2 52 aa5.36□□□□□ -1.55
COL17A1-202ENST00000369733 HERC2O95714 4834 aa5.31□□□□□ -1.56
COL17A1-202ENST00000369733 KRTAP4-7Q9BYR0 210 aa5.27□□□□□ -1.57
COL17A1-202ENST00000369733 MUC17Q685J3 4493 aa5.26□□□□□ -1.57
COL17A1-202ENST00000369733 FLGP20930 4061 aaPredicted RBP5.24□□□□□ -1.57
COL17A1-202ENST00000369733 LCE3DQ9BYE3 92 aa5.21□□□□□ -1.58
COL17A1-202ENST00000369733 MT1LQ93083 61 aa5.19□□□□□ -1.58
COL17A1-202ENST00000369733 SPRR2EP22531 72 aa5.16□□□□□ -1.58
COL17A1-202ENST00000369733 SPRR2BP35325 72 aa5.16□□□□□ -1.58
COL17A1-202ENST00000369733 SPRR2AP35326 72 aa5.16□□□□□ -1.58
COL17A1-202ENST00000369733 LCE3EQ5T5B0 92 aa5.15□□□□□ -1.59
COL17A1-202ENST00000369733 MT1EP04732 61 aa5.12□□□□□ -1.59
COL17A1-202ENST00000369733 LCE2BO14633 110 aa5.11□□□□□ -1.59
COL17A1-202ENST00000369733 PCLOQ9Y6V0 5065 aa5.1□□□□□ -1.59
COL17A1-202ENST00000369733 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
COL17A1-202ENST00000369733 BIRC6Q9NR09 4857 aa5.03□□□□□ -1.6
COL17A1-202ENST00000369733 SPRR2DP22532 72 aa4.97□□□□□ -1.61
COL17A1-202ENST00000369733 LOC100996750A0A140TA64 210 aa4.95□□□□□ -1.62
COL17A1-202ENST00000369733 MT1MQ8N339 61 aa4.92□□□□□ -1.62
COL17A1-202ENST00000369733 PRM1P04553 51 aa4.89□□□□□ -1.63
COL17A1-202ENST00000369733 ABCA13Q86UQ4 5058 aa4.88□□□□□ -1.63
COL17A1-202ENST00000369733 KRTAP4-3Q9BYR4 195 aa4.87□□□□□ -1.63
COL17A1-202ENST00000369733 KRTAP2-3P0C7H8 128 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms