RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 DCAF8L2P0C7V8 631 aa26.68■■□□□ 1.86
COL17A1-202ENST00000369733 NISCHQ9Y2I1 1504 aa26.43■■□□□ 1.82
COL17A1-202ENST00000369733 SUPT5HO00267 1087 aaKnown RBP26.24■■□□□ 1.79
COL17A1-202ENST00000369733 SHROOM4Q9ULL8 1493 aa25.74■■□□□ 1.71
COL17A1-202ENST00000369733 EHMT2Q96KQ7 1210 aa25.2■■□□□ 1.62
COL17A1-202ENST00000369733 PCGF6Q9BYE7 350 aa25.2■■□□□ 1.62
COL17A1-202ENST00000369733 PELP1Q8IZL8 1130 aaKnown RBP25.12■■□□□ 1.61
COL17A1-202ENST00000369733 ZEB1P37275 1124 aaPredicted RBP24.71■■□□□ 1.55
COL17A1-202ENST00000369733 FAM9AQ8IZU1 332 aaPredicted RBP24.67■■□□□ 1.54
COL17A1-202ENST00000369733 CENPBP07199 599 aaPredicted RBP24.64■■□□□ 1.54
COL17A1-202ENST00000369733 APLP2Q06481 763 aa24.53■■□□□ 1.52
COL17A1-202ENST00000369733 TTBK1Q5TCY1 1321 aaPredicted RBP24.48■■□□□ 1.51
COL17A1-202ENST00000369733 CCER1Q8TC90 406 aaPredicted RBP24.39■■□□□ 1.49
COL17A1-202ENST00000369733 HRCP23327 699 aa24.38■■□□□ 1.49
COL17A1-202ENST00000369733 MYT1Q01538 1121 aa24.37■■□□□ 1.49
COL17A1-202ENST00000369733 TRIM41Q8WV44 630 aa24.26■■□□□ 1.47
COL17A1-202ENST00000369733 TRIM26Q12899 539 aaPredicted RBP24.11■■□□□ 1.45
COL17A1-202ENST00000369733 ERICH6Q7L0X2 663 aa24.1■■□□□ 1.45
COL17A1-202ENST00000369733 YTHDC1Q96MU7 727 aaKnown RBP24.07■■□□□ 1.44
COL17A1-202ENST00000369733 PPARGC1BQ86YN6 1023 aaKnown RBP23.89■■□□□ 1.41
COL17A1-202ENST00000369733 RANGAP1P46060 587 aaPredicted RBP23.86■■□□□ 1.41
COL17A1-202ENST00000369733 CHIC1Q5VXU3 224 aa23.79■■□□□ 1.4
COL17A1-202ENST00000369733 UBTFP17480 764 aaKnown RBP23.77■■□□□ 1.4
COL17A1-202ENST00000369733 NEFLP07196 543 aa23.76■■□□□ 1.39
COL17A1-202ENST00000369733 LOC105371045A0A1W2PR82 267 aa23.74■■□□□ 1.39
COL17A1-202ENST00000369733 ATP1B4Q9UN42 357 aaPredicted RBP23.46■■□□□ 1.35
COL17A1-202ENST00000369733 DIEXFQ68CQ4 756 aaKnown RBP23.36■■□□□ 1.33
COL17A1-202ENST00000369733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.31■■□□□ 1.32
COL17A1-202ENST00000369733 HNRNPUL2Q1KMD3 747 aaKnown RBP23.22■■□□□ 1.31
COL17A1-202ENST00000369733 GTF3C3Q9Y5Q9 886 aa23.17■■□□□ 1.3
COL17A1-202ENST00000369733 ITGAEP38570 1179 aa23.09■■□□□ 1.29
COL17A1-202ENST00000369733 ACIN1Q9UKV3 1341 aaKnown RBP22.93■■□□□ 1.26
COL17A1-202ENST00000369733 DAXXQ9UER7 740 aaPredicted RBP22.87■■□□□ 1.25
COL17A1-202ENST00000369733 POLR3GLQ9BT43 218 aa22.78■■□□□ 1.24
COL17A1-202ENST00000369733 ZNF316A6NFI3 1004 aaPredicted RBP22.77■■□□□ 1.24
COL17A1-202ENST00000369733 BCANQ96GW7 911 aa22.75■■□□□ 1.23
COL17A1-202ENST00000369733 RTL5Q5HYW3 569 aaPredicted RBP22.72■■□□□ 1.23
COL17A1-202ENST00000369733 CNGB1Q14028 1251 aaPredicted RBP22.66■■□□□ 1.22
COL17A1-202ENST00000369733 DCAF1Q9Y4B6 1507 aa22.6■■□□□ 1.21
COL17A1-202ENST00000369733 NEUROD1Q13562 356 aa22.5■■□□□ 1.19
COL17A1-202ENST00000369733 CDK11AQ9UQ88 783 aaPredicted RBP22.49■■□□□ 1.19
COL17A1-202ENST00000369733 SCAF1Q9H7N4 1312 aaKnown RBP22.49■■□□□ 1.19
COL17A1-202ENST00000369733 FAM50AQ14320 339 aaKnown RBP22.48■■□□□ 1.19
COL17A1-202ENST00000369733 ANP32CO43423 234 aa22.46■■□□□ 1.19
COL17A1-202ENST00000369733 CLSPNQ9HAW4 1339 aa22.32■■□□□ 1.16
COL17A1-202ENST00000369733 TRIM52Q96A61 297 aa22.26■■□□□ 1.15
COL17A1-202ENST00000369733 FKBP8Q14318 412 aa22.19■■□□□ 1.14
COL17A1-202ENST00000369733 MYO15BQ96JP2 1530 aa22.18■■□□□ 1.14
COL17A1-202ENST00000369733 CSRNP3Q8WYN3 585 aa22.17■■□□□ 1.14
COL17A1-202ENST00000369733 MYT1LQ9UL68 1186 aa22.1■■□□□ 1.13
COL17A1-202ENST00000369733 ANP32AP39687 249 aaKnown RBP22.08■■□□□ 1.13
COL17A1-202ENST00000369733 MIER1Q8N108 512 aa22.03■■□□□ 1.12
COL17A1-202ENST00000369733 ZCCHC6Q5VYS8 1495 aaKnown RBP22.02■■□□□ 1.12
COL17A1-202ENST00000369733 ZNF326Q5BKZ1 582 aaKnown RBP22.01■■□□□ 1.11
COL17A1-202ENST00000369733 SLC4A1APQ9BWU0 796 aaKnown RBP22.01■■□□□ 1.11
COL17A1-202ENST00000369733 PABPN1Q86U42 306 aaKnown RBP eCLIP21.95■■□□□ 1.1
COL17A1-202ENST00000369733 ABCC9O60706 1549 aa21.94■■□□□ 1.1
COL17A1-202ENST00000369733 CCDC180Q9P1Z9 1646 aa21.93■■□□□ 1.1
COL17A1-202ENST00000369733 DDX10Q13206 875 aaKnown RBP21.93■■□□□ 1.1
COL17A1-202ENST00000369733 NPM2Q86SE8 214 aaKnown RBP21.91■■□□□ 1.1
COL17A1-202ENST00000369733 HNRNPUQ00839 825 aaKnown RBP eCLIP21.89■■□□□ 1.09
COL17A1-202ENST00000369733 P3H3Q8IVL6 736 aa21.81■■□□□ 1.08
COL17A1-202ENST00000369733 TONSLQ96HA7 1378 aa21.79■■□□□ 1.08
COL17A1-202ENST00000369733 EIF5BO60841 1220 aaKnown RBP21.76■■□□□ 1.07
COL17A1-202ENST00000369733 NBR1Q14596 966 aa21.74■■□□□ 1.07
COL17A1-202ENST00000369733 CANXP27824 592 aaKnown RBP21.74■■□□□ 1.07
COL17A1-202ENST00000369733 FAM9BQ8IZU0 186 aa21.73■■□□□ 1.07
COL17A1-202ENST00000369733 SCRIBQ14160 1630 aa21.73■■□□□ 1.07
COL17A1-202ENST00000369733 ANP32EQ9BTT0 268 aa21.72■■□□□ 1.07
COL17A1-202ENST00000369733 ZBTB47Q9UFB7 747 aaPredicted RBP21.66■■□□□ 1.06
COL17A1-202ENST00000369733 CCDC136Q96JN2 1154 aa21.64■■□□□ 1.05
COL17A1-202ENST00000369733 IRX6P78412 446 aaPredicted RBP21.63■■□□□ 1.05
COL17A1-202ENST00000369733 ARID3CA6NKF2 412 aa21.56■■□□□ 1.04
COL17A1-202ENST00000369733 CEP162Q5TB80 1403 aa21.54■■□□□ 1.04
COL17A1-202ENST00000369733 HIRIP3Q9BW71 556 aaPredicted RBP21.53■■□□□ 1.04
COL17A1-202ENST00000369733 CLIP1P30622 1438 aa21.53■■□□□ 1.04
COL17A1-202ENST00000369733 MRS2Q9HD23 443 aa21.52■■□□□ 1.04
COL17A1-202ENST00000369733 BCL11AQ9H165 835 aa21.48■■□□□ 1.03
COL17A1-202ENST00000369733 SUPT16HQ9Y5B9 1047 aaKnown RBP21.48■■□□□ 1.03
COL17A1-202ENST00000369733 SALL2Q9Y467 1007 aaPredicted RBP21.47■■□□□ 1.03
COL17A1-202ENST00000369733 TMC1Q8TDI8 760 aa21.45■■□□□ 1.02
COL17A1-202ENST00000369733 ZNF777Q9ULD5 760 aaPredicted RBP21.44■■□□□ 1.02
COL17A1-202ENST00000369733 GLIPR1L2Q4G1C9 344 aa21.42■■□□□ 1.02
COL17A1-202ENST00000369733 UPF2Q9HAU5 1272 aaKnown RBP21.41■■□□□ 1.02
COL17A1-202ENST00000369733 RSF1Q96T23 1441 aaPredicted RBP21.41■■□□□ 1.02
COL17A1-202ENST00000369733 ANP32BQ92688 251 aaKnown RBP21.4■■□□□ 1.02
COL17A1-202ENST00000369733 GOLGA3Q08378 1498 aa21.4■■□□□ 1.02
COL17A1-202ENST00000369733 CHIC2Q9UKJ5 165 aa21.36■■□□□ 1.01
COL17A1-202ENST00000369733 EEA1Q15075 1411 aa21.36■■□□□ 1.01
COL17A1-202ENST00000369733 NEFMP07197 916 aa21.33■■□□□ 1.01
COL17A1-202ENST00000369733 HSP90AA1P07900 732 aaKnown RBP21.33■■□□□ 1.01
COL17A1-202ENST00000369733 FBLN2P98095 1184 aa21.32■■□□□ 1
COL17A1-202ENST00000369733 TNIKQ9UKE5 1360 aa21.32■■□□□ 1
COL17A1-202ENST00000369733 EIF4G2P78344 907 aaKnown RBP eCLIP21.31■■□□□ 1
COL17A1-202ENST00000369733 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.3■■□□□ 1
COL17A1-202ENST00000369733 ARXQ96QS3 562 aa21.28■■□□□ 1
COL17A1-202ENST00000369733 DDRGK1Q96HY6 314 aa21.24■□□□□ 0.99
COL17A1-202ENST00000369733 MTUS2Q5JR59 1369 aa21.21■□□□□ 0.99
COL17A1-202ENST00000369733 PPP4R2Q9NY27 417 aa21.21■□□□□ 0.99
COL17A1-202ENST00000369733 WDR43Q15061 677 aaKnown RBP eCLIP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms