RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 MDFIQ99750 246 aa11.64□□□□□ -0.55
PDLIM3-212ENST00000620787 CDC42SE1Q9NRR8 79 aa11.63□□□□□ -0.55
PDLIM3-212ENST00000620787 PSORS1C2Q9UIG4 136 aa11.63□□□□□ -0.55
PDLIM3-212ENST00000620787 DNAH8Q96JB1 4490 aa11.63□□□□□ -0.55
PDLIM3-212ENST00000620787 IGLV5-52A0A0A0MRZ9 124 aa11.62□□□□□ -0.55
PDLIM3-212ENST00000620787 HECTD4Q9Y4D8 3996 aa11.59□□□□□ -0.55
PDLIM3-212ENST00000620787 KTN1-AS1Q86SY8 53 aa11.59□□□□□ -0.55
PDLIM3-212ENST00000620787 A6NN06 94 aa11.57□□□□□ -0.56
PDLIM3-212ENST00000620787 A0A087WTM6 91 aa11.57□□□□□ -0.56
PDLIM3-212ENST00000620787 FRAS1Q86XX4 4008 aa11.57□□□□□ -0.56
PDLIM3-212ENST00000620787 ZNF861PO60384 105 aa11.56□□□□□ -0.56
PDLIM3-212ENST00000620787 KRTAP13-3Q3SY46 172 aa11.56□□□□□ -0.56
PDLIM3-212ENST00000620787 Q5W150 140 aa11.56□□□□□ -0.56
PDLIM3-212ENST00000620787 VPS13DQ5THJ4 4388 aa11.54□□□□□ -0.56
PDLIM3-212ENST00000620787 NUPR2A6NF83 97 aa11.54□□□□□ -0.56
PDLIM3-212ENST00000620787 SPINK7P58062 85 aa11.53□□□□□ -0.56
PDLIM3-212ENST00000620787 RTL8CO15255 209 aa11.53□□□□□ -0.56
PDLIM3-212ENST00000620787 SPINK6Q6UWN8 80 aa11.51□□□□□ -0.57
PDLIM3-212ENST00000620787 STARD9Q9P2P6 4700 aa11.48□□□□□ -0.57
PDLIM3-212ENST00000620787 DNAH17Q9UFH2 4485 aa11.48□□□□□ -0.57
PDLIM3-212ENST00000620787 PRR26Q8N8Z3 221 aa11.48□□□□□ -0.57
PDLIM3-212ENST00000620787 ALMS1Q8TCU4 4167 aa11.47□□□□□ -0.57
PDLIM3-212ENST00000620787 CIRBP-AS1Q8TBR5 109 aa11.42□□□□□ -0.58
PDLIM3-212ENST00000620787 IGLV7-43P04211 117 aa11.4□□□□□ -0.58
PDLIM3-212ENST00000620787 ACYP2P14621 99 aa11.4□□□□□ -0.58
PDLIM3-212ENST00000620787 RBM12B-AS1Q9P1G2 102 aa11.4□□□□□ -0.58
PDLIM3-212ENST00000620787 DNAH2Q9P225 4427 aa11.4□□□□□ -0.58
PDLIM3-212ENST00000620787 FBN3Q75N90 2809 aa11.39□□□□□ -0.59
PDLIM3-212ENST00000620787 PRKDCP78527 4128 aaKnown RBP11.39□□□□□ -0.59
PDLIM3-212ENST00000620787 C8orf87E5RJ46 101 aa11.38□□□□□ -0.59
PDLIM3-212ENST00000620787 C7orf65Q6ZTY9 151 aa11.36□□□□□ -0.59
PDLIM3-212ENST00000620787 DMAC1Q96GE9 116 aa11.35□□□□□ -0.59
PDLIM3-212ENST00000620787 KMT2AQ03164 3969 aa11.34□□□□□ -0.59
PDLIM3-212ENST00000620787 SSBP3-AS1Q7Z2R9 100 aa11.32□□□□□ -0.6
PDLIM3-212ENST00000620787 LINC00313P59037 77 aa11.28□□□□□ -0.6
PDLIM3-212ENST00000620787 FAM229AH3BQW9 127 aa11.28□□□□□ -0.6
PDLIM3-212ENST00000620787 RETNLBQ9BQ08 111 aa11.26□□□□□ -0.61
PDLIM3-212ENST00000620787 MEGF8Q7Z7M0 2845 aa11.26□□□□□ -0.61
PDLIM3-212ENST00000620787 IGKV2-30P06310 120 aa11.25□□□□□ -0.61
PDLIM3-212ENST00000620787 C1orf134Q5TEV5 83 aa11.2□□□□□ -0.62
PDLIM3-212ENST00000620787 DNAH11Q96DT5 4516 aa11.2□□□□□ -0.62
PDLIM3-212ENST00000620787 TGP01266 2768 aa11.19□□□□□ -0.62
PDLIM3-212ENST00000620787 A0A1B0GU69 56 aa11.18□□□□□ -0.62
PDLIM3-212ENST00000620787 KRTAP16-1A8MUX0 517 aa11.18□□□□□ -0.62
PDLIM3-212ENST00000620787 KRTAP13-2Q52LG2 175 aa11.18□□□□□ -0.62
PDLIM3-212ENST00000620787 DNAH6Q9C0G6 4158 aa11.17□□□□□ -0.62
PDLIM3-212ENST00000620787 DNHD1Q96M86 4753 aa11.14□□□□□ -0.63
PDLIM3-212ENST00000620787 DNAH5Q8TE73 4624 aa11.14□□□□□ -0.63
PDLIM3-212ENST00000620787 SPATA8Q6RVD6 105 aa11.12□□□□□ -0.63
PDLIM3-212ENST00000620787 KRTAP10-2P60368 255 aa11.08□□□□□ -0.64
PDLIM3-212ENST00000620787 IGKV2D-30A0A075B6S6 120 aa11.05□□□□□ -0.64
PDLIM3-212ENST00000620787 PRAC1Q96KF2 57 aa11.05□□□□□ -0.64
PDLIM3-212ENST00000620787 PLA2G1BP04054 148 aaKnown RBP11.03□□□□□ -0.64
PDLIM3-212ENST00000620787 MIR22HGQ0VDD5 57 aa11.03□□□□□ -0.64
PDLIM3-212ENST00000620787 UQCR11O14957 56 aa11.02□□□□□ -0.65
PDLIM3-212ENST00000620787 ADM2Q7Z4H4 148 aa11.02□□□□□ -0.65
PDLIM3-212ENST00000620787 LY6G6CO95867 125 aa10.99□□□□□ -0.65
PDLIM3-212ENST00000620787 KRTAP1-4P0C5Y4 121 aa10.99□□□□□ -0.65
PDLIM3-212ENST00000620787 LRP1BQ9NZR2 4599 aa10.99□□□□□ -0.65
PDLIM3-212ENST00000620787 Q6ZSA8 131 aa10.96□□□□□ -0.65
PDLIM3-212ENST00000620787 KRTAP10-1P60331 282 aa10.94□□□□□ -0.66
PDLIM3-212ENST00000620787 PKD1P98161 4303 aa10.93□□□□□ -0.66
PDLIM3-212ENST00000620787 VPS13BQ7Z7G8 4022 aa10.86□□□□□ -0.67
PDLIM3-212ENST00000620787 C4orf48Q5BLP8 95 aa10.84□□□□□ -0.67
PDLIM3-212ENST00000620787 Q8N1X5 172 aa10.83□□□□□ -0.68
PDLIM3-212ENST00000620787 TYMSOSQ8TAI1 123 aa10.82□□□□□ -0.68
PDLIM3-212ENST00000620787 SPINK1P00995 79 aa10.82□□□□□ -0.68
PDLIM3-212ENST00000620787 FAT2Q9NYQ8 4349 aa10.8□□□□□ -0.68
PDLIM3-212ENST00000620787 LINC01554Q52M75 96 aa10.77□□□□□ -0.69
PDLIM3-212ENST00000620787 HYDINQ4G0P3 5121 aa10.72□□□□□ -0.69
PDLIM3-212ENST00000620787 CSAG1Q6PB30 78 aa10.69□□□□□ -0.7
PDLIM3-212ENST00000620787 LINC00304Q8N9R0 145 aa10.67□□□□□ -0.7
PDLIM3-212ENST00000620787 RPS29P62273 56 aaKnown RBP10.66□□□□□ -0.7
PDLIM3-212ENST00000620787 H0YAA0 97 aa10.63□□□□□ -0.71
PDLIM3-212ENST00000620787 SACSQ9NZJ4 4579 aa10.63□□□□□ -0.71
PDLIM3-212ENST00000620787 KRTAP3-1Q9BYR8 98 aa10.59□□□□□ -0.71
PDLIM3-212ENST00000620787 A8MUU9 505 aa10.58□□□□□ -0.72
PDLIM3-212ENST00000620787 C20orf166-AS1Q96NR2 134 aa10.57□□□□□ -0.72
PDLIM3-212ENST00000620787 C9orf92A6NGG3 77 aa10.55□□□□□ -0.72
PDLIM3-212ENST00000620787 A0A1B0GU33 70 aa10.51□□□□□ -0.73
PDLIM3-212ENST00000620787 PKHD1P08F94 4074 aa10.49□□□□□ -0.73
PDLIM3-212ENST00000620787 H1FX-AS1Q4G0G2 97 aa10.48□□□□□ -0.73
PDLIM3-212ENST00000620787 PKHD1L1Q86WI1 4243 aa10.47□□□□□ -0.73
PDLIM3-212ENST00000620787 SMR3BP02814 79 aaPredicted RBP10.39□□□□□ -0.75
PDLIM3-212ENST00000620787 APOBP04114 4563 aaKnown RBP10.38□□□□□ -0.75
PDLIM3-212ENST00000620787 KRTAP25-1Q3LHN0 102 aa10.37□□□□□ -0.75
PDLIM3-212ENST00000620787 KRTAP21-3Q3LHN1 58 aa10.37□□□□□ -0.75
PDLIM3-212ENST00000620787 DYNC1H1Q14204 4646 aaKnown RBP10.36□□□□□ -0.75
PDLIM3-212ENST00000620787 COX6B2Q6YFQ2 88 aa10.32□□□□□ -0.76
PDLIM3-212ENST00000620787 KRTAP10-4P60372 401 aaPredicted RBP10.31□□□□□ -0.76
PDLIM3-212ENST00000620787 FAT1Q14517 4588 aa10.29□□□□□ -0.76
PDLIM3-212ENST00000620787 K7ERS5 55 aa10.21□□□□□ -0.78
PDLIM3-212ENST00000620787 FLG2Q5D862 2391 aaPredicted RBP10.17□□□□□ -0.78
PDLIM3-212ENST00000620787 A0A1B0GVY2 172 aa10.15□□□□□ -0.78
PDLIM3-212ENST00000620787 CRIPTQ9P021 101 aa10.14□□□□□ -0.79
PDLIM3-212ENST00000620787 H3BS24 57 aa10.14□□□□□ -0.79
PDLIM3-212ENST00000620787 KRTAP10-6P60371 365 aaPredicted RBP10.12□□□□□ -0.79
PDLIM3-212ENST00000620787 KRTAP3-3Q9BYR6 98 aa10.12□□□□□ -0.79
PDLIM3-212ENST00000620787 ROMO1P60602 79 aa10.11□□□□□ -0.79
PDLIM3-212ENST00000620787 FAT3Q8TDW7 4589 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms