RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 NISCHQ9Y2I1 1504 aa39.43■■■■□ 3.9
PDLIM3-212ENST00000620787 SHROOM4Q9ULL8 1493 aa33.91■■■■□ 3.02
PDLIM3-212ENST00000620787 ZCCHC6Q5VYS8 1495 aaKnown RBP33.48■■■□□ 2.95
PDLIM3-212ENST00000620787 SUPT5HO00267 1087 aaKnown RBP33.45■■■□□ 2.94
PDLIM3-212ENST00000620787 CCDC180Q9P1Z9 1646 aa33.36■■■□□ 2.93
PDLIM3-212ENST00000620787 MYO15BQ96JP2 1530 aa32.94■■■□□ 2.86
PDLIM3-212ENST00000620787 CHIC1Q5VXU3 224 aa32.82■■■□□ 2.84
PDLIM3-212ENST00000620787 HRCP23327 699 aa32.69■■■□□ 2.82
PDLIM3-212ENST00000620787 DCAF1Q9Y4B6 1507 aa32.37■■■□□ 2.77
PDLIM3-212ENST00000620787 DCAF8L2P0C7V8 631 aa32.37■■■□□ 2.77
PDLIM3-212ENST00000620787 PCGF6Q9BYE7 350 aa32.27■■■□□ 2.76
PDLIM3-212ENST00000620787 PPARGC1BQ86YN6 1023 aaKnown RBP31.91■■■□□ 2.7
PDLIM3-212ENST00000620787 LOC105371045A0A1W2PR82 267 aa31.85■■■□□ 2.69
PDLIM3-212ENST00000620787 ABCC9O60706 1549 aa31.73■■■□□ 2.67
PDLIM3-212ENST00000620787 TRIM26Q12899 539 aaPredicted RBP31.57■■■□□ 2.64
PDLIM3-212ENST00000620787 RSF1Q96T23 1441 aaPredicted RBP31.38■■■□□ 2.61
PDLIM3-212ENST00000620787 SCRIBQ14160 1630 aa31.32■■■□□ 2.6
PDLIM3-212ENST00000620787 RB1CC1Q8TDY2 1594 aa31.2■■■□□ 2.58
PDLIM3-212ENST00000620787 TRIM41Q8WV44 630 aa31.11■■■□□ 2.57
PDLIM3-212ENST00000620787 ZEB1P37275 1124 aaPredicted RBP31.09■■■□□ 2.57
PDLIM3-212ENST00000620787 FAM9AQ8IZU1 332 aaPredicted RBP30.87■■■□□ 2.53
PDLIM3-212ENST00000620787 CECR2Q9BXF3 1484 aa30.72■■■□□ 2.51
PDLIM3-212ENST00000620787 MROH2BQ7Z745 1585 aa30.69■■■□□ 2.5
PDLIM3-212ENST00000620787 NACADO15069 1562 aa30.66■■■□□ 2.5
PDLIM3-212ENST00000620787 WIZO95785 1651 aa30.6■■■□□ 2.49
PDLIM3-212ENST00000620787 EHMT2Q96KQ7 1210 aa30.58■■■□□ 2.49
PDLIM3-212ENST00000620787 EIF4G1Q04637 1599 aaKnown RBP30.47■■■□□ 2.47
PDLIM3-212ENST00000620787 BAZ1AQ9NRL2 1556 aaPredicted RBP30.46■■■□□ 2.47
PDLIM3-212ENST00000620787 SCAF1Q9H7N4 1312 aaKnown RBP30.44■■■□□ 2.46
PDLIM3-212ENST00000620787 PELP1Q8IZL8 1130 aaKnown RBP30.38■■■□□ 2.45
PDLIM3-212ENST00000620787 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.19■■■□□ 2.42
PDLIM3-212ENST00000620787 CCER1Q8TC90 406 aaPredicted RBP30.12■■■□□ 2.41
PDLIM3-212ENST00000620787 TOP2AP11388 1531 aaKnown RBP30.1■■■□□ 2.41
PDLIM3-212ENST00000620787 WRNQ14191 1432 aaPredicted RBP eCLIP30.09■■■□□ 2.41
PDLIM3-212ENST00000620787 ABCC8Q09428 1581 aa30.07■■■□□ 2.4
PDLIM3-212ENST00000620787 CCDC88BA6NC98 1476 aa30.02■■■□□ 2.4
PDLIM3-212ENST00000620787 SMARCA4P51532 1647 aa29.97■■■□□ 2.39
PDLIM3-212ENST00000620787 SMARCA2P51531 1590 aa29.97■■■□□ 2.39
PDLIM3-212ENST00000620787 ACIN1Q9UKV3 1341 aaKnown RBP29.97■■■□□ 2.39
PDLIM3-212ENST00000620787 CEP162Q5TB80 1403 aa29.95■■■□□ 2.38
PDLIM3-212ENST00000620787 NEUROD1Q13562 356 aa29.88■■■□□ 2.37
PDLIM3-212ENST00000620787 TNIKQ9UKE5 1360 aa29.85■■■□□ 2.37
PDLIM3-212ENST00000620787 SOGA1O94964 1423 aa29.84■■■□□ 2.37
PDLIM3-212ENST00000620787 DIEXFQ68CQ4 756 aaKnown RBP29.84■■■□□ 2.37
PDLIM3-212ENST00000620787 UNC13AQ9UPW8 1703 aa29.78■■■□□ 2.36
PDLIM3-212ENST00000620787 EEA1Q15075 1411 aa29.77■■■□□ 2.36
PDLIM3-212ENST00000620787 TTBK1Q5TCY1 1321 aaPredicted RBP29.75■■■□□ 2.35
PDLIM3-212ENST00000620787 RUSC2Q8N2Y8 1516 aa29.69■■■□□ 2.34
PDLIM3-212ENST00000620787 CENPBP07199 599 aaPredicted RBP29.67■■■□□ 2.34
PDLIM3-212ENST00000620787 CSRNP3Q8WYN3 585 aa29.66■■■□□ 2.34
PDLIM3-212ENST00000620787 GTF3C3Q9Y5Q9 886 aa29.61■■■□□ 2.33
PDLIM3-212ENST00000620787 GOLGA3Q08378 1498 aa29.61■■■□□ 2.33
PDLIM3-212ENST00000620787 UBTFP17480 764 aaKnown RBP29.55■■■□□ 2.32
PDLIM3-212ENST00000620787 ZNF316A6NFI3 1004 aaPredicted RBP29.5■■■□□ 2.31
PDLIM3-212ENST00000620787 KIF21BO75037 1637 aa29.43■■■□□ 2.3
PDLIM3-212ENST00000620787 CEP164Q9UPV0 1460 aa29.38■■■□□ 2.29
PDLIM3-212ENST00000620787 PEG3Q9GZU2 1588 aa29.37■■■□□ 2.29
PDLIM3-212ENST00000620787 SYNJ1O43426 1573 aa29.37■■■□□ 2.29
PDLIM3-212ENST00000620787 BICRAQ9NZM4 1560 aa29.29■■■□□ 2.28
PDLIM3-212ENST00000620787 CLIP1P30622 1438 aa29.26■■■□□ 2.27
PDLIM3-212ENST00000620787 VPS8Q8N3P4 1428 aa29.23■■■□□ 2.27
PDLIM3-212ENST00000620787 HNRNPUL2Q1KMD3 747 aaKnown RBP29.21■■■□□ 2.27
PDLIM3-212ENST00000620787 BAZ1BQ9UIG0 1483 aaKnown RBP29.2■■■□□ 2.27
PDLIM3-212ENST00000620787 MIER1Q8N108 512 aa29.15■■■□□ 2.26
PDLIM3-212ENST00000620787 YTHDC1Q96MU7 727 aaKnown RBP29.13■■■□□ 2.25
PDLIM3-212ENST00000620787 RAPGEF2Q9Y4G8 1499 aa29.1■■■□□ 2.25
PDLIM3-212ENST00000620787 PABPN1Q86U42 306 aaKnown RBP eCLIP29.09■■■□□ 2.25
PDLIM3-212ENST00000620787 ATAD2BQ9ULI0 1458 aa29.02■■■□□ 2.24
PDLIM3-212ENST00000620787 APLP2Q06481 763 aa28.98■■■□□ 2.23
PDLIM3-212ENST00000620787 MYT1Q01538 1121 aa28.97■■■□□ 2.23
PDLIM3-212ENST00000620787 TOP2BQ02880 1626 aa28.95■■■□□ 2.23
PDLIM3-212ENST00000620787 BIVM-ERCC5R4GMW8 1640 aa28.88■■■□□ 2.21
PDLIM3-212ENST00000620787 ERICH3Q5RHP9 1530 aa28.84■■■□□ 2.21
PDLIM3-212ENST00000620787 CLSPNQ9HAW4 1339 aa28.84■■■□□ 2.21
PDLIM3-212ENST00000620787 DHX57Q6P158 1386 aaKnown RBP28.81■■■□□ 2.2
PDLIM3-212ENST00000620787 RANGAP1P46060 587 aaPredicted RBP28.81■■■□□ 2.2
PDLIM3-212ENST00000620787 ARAP1Q96P48 1450 aa28.8■■■□□ 2.2
PDLIM3-212ENST00000620787 PRXQ9BXM0 1461 aa28.77■■■□□ 2.2
PDLIM3-212ENST00000620787 RRBP1Q9P2E9 1410 aaKnown RBP28.64■■■□□ 2.18
PDLIM3-212ENST00000620787 KANK4Q5T7N3 995 aaPredicted RBP28.63■■■□□ 2.17
PDLIM3-212ENST00000620787 CUX2O14529 1486 aa28.59■■■□□ 2.17
PDLIM3-212ENST00000620787 CUX1P39880 1505 aa28.55■■■□□ 2.16
PDLIM3-212ENST00000620787 KIF27Q86VH2 1401 aa28.47■■■□□ 2.15
PDLIM3-212ENST00000620787 ARHGAP35Q9NRY4 1499 aa28.45■■■□□ 2.14
PDLIM3-212ENST00000620787 CCNB3Q8WWL7 1395 aa28.44■■■□□ 2.14
PDLIM3-212ENST00000620787 SUPT16HQ9Y5B9 1047 aaKnown RBP28.44■■■□□ 2.14
PDLIM3-212ENST00000620787 HMGXB3Q12766 1538 aa28.43■■■□□ 2.14
PDLIM3-212ENST00000620787 NCAPD3P42695 1498 aa28.35■■■□□ 2.13
PDLIM3-212ENST00000620787 MAPKBP1O60336 1514 aa28.31■■■□□ 2.12
PDLIM3-212ENST00000620787 CFTRP13569 1480 aa28.28■■■□□ 2.12
PDLIM3-212ENST00000620787 TIAM1Q13009 1591 aa28.26■■■□□ 2.11
PDLIM3-212ENST00000620787 RAB3GAP2Q9H2M9 1393 aa28.26■■■□□ 2.11
PDLIM3-212ENST00000620787 MAP3K1Q13233 1512 aa28.25■■■□□ 2.11
PDLIM3-212ENST00000620787 PRDM2Q13029 1718 aa28.24■■■□□ 2.11
PDLIM3-212ENST00000620787 ITGAEP38570 1179 aa28.22■■■□□ 2.11
PDLIM3-212ENST00000620787 SETD5Q9C0A6 1442 aa28.13■■■□□ 2.09
PDLIM3-212ENST00000620787 IGF1RP08069 1367 aa28.12■■■□□ 2.09
PDLIM3-212ENST00000620787 KCNH8Q96L42 1107 aa28.12■■■□□ 2.09
PDLIM3-212ENST00000620787 LRRC9Q6ZRR7 1453 aa28.11■■■□□ 2.09
PDLIM3-212ENST00000620787 TSHZ2Q9NRE2 1034 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms