RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 Q5W150 140 aa7.87□□□□□ -1.15
PTCH1-212ENST00000546744 SPATA8Q6RVD6 105 aa7.87□□□□□ -1.15
PTCH1-212ENST00000546744 KRTAP10-11P60412 298 aa7.85□□□□□ -1.15
PTCH1-212ENST00000546744 NBPF19A0A087WUL8 3843 aa7.85□□□□□ -1.15
PTCH1-212ENST00000546744 NBEAL2Q6ZNJ1 2754 aa7.84□□□□□ -1.16
PTCH1-212ENST00000546744 OTOGQ6ZRI0 2925 aa7.83□□□□□ -1.16
PTCH1-212ENST00000546744 K7EIL1 84 aa7.82□□□□□ -1.16
PTCH1-212ENST00000546744 KRTAP4-16G5E9R7 235 aaPredicted RBP7.82□□□□□ -1.16
PTCH1-212ENST00000546744 ANAPC11Q9NYG5 84 aa7.82□□□□□ -1.16
PTCH1-212ENST00000546744 A0A0D9SG42 100 aa7.8□□□□□ -1.16
PTCH1-212ENST00000546744 KRTAP26-1Q6PEX3 210 aa7.8□□□□□ -1.16
PTCH1-212ENST00000546744 ROMO1P60602 79 aa7.78□□□□□ -1.16
PTCH1-212ENST00000546744 VPS13CQ709C8 3753 aa7.77□□□□□ -1.16
PTCH1-212ENST00000546744 RPL37P61927 97 aaKnown RBP7.76□□□□□ -1.17
PTCH1-212ENST00000546744 PLAC8Q9NZF1 115 aa7.76□□□□□ -1.17
PTCH1-212ENST00000546744 WWC2-AS2Q96NR7 200 aa7.75□□□□□ -1.17
PTCH1-212ENST00000546744 LINC00483Q53H64 154 aa7.73□□□□□ -1.17
PTCH1-212ENST00000546744 C9orf92A6NGG3 77 aa7.73□□□□□ -1.17
PTCH1-212ENST00000546744 TENM1Q9UKZ4 2725 aa7.69□□□□□ -1.18
PTCH1-212ENST00000546744 H1FX-AS1Q4G0G2 97 aa7.69□□□□□ -1.18
PTCH1-212ENST00000546744 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.68□□□□□ -1.18
PTCH1-212ENST00000546744 ANK3Q12955 4377 aaKnown RBP7.65□□□□□ -1.18
PTCH1-212ENST00000546744 KRTAP25-1Q3LHN0 102 aa7.65□□□□□ -1.18
PTCH1-212ENST00000546744 KRTAP16-1A8MUX0 517 aa7.64□□□□□ -1.19
PTCH1-212ENST00000546744 COX6B2Q6YFQ2 88 aa7.62□□□□□ -1.19
PTCH1-212ENST00000546744 ZNF469Q96JG9 3925 aaPredicted RBP7.62□□□□□ -1.19
PTCH1-212ENST00000546744 VWFP04275 2813 aa7.61□□□□□ -1.19
PTCH1-212ENST00000546744 S4R3F8 94 aa7.57□□□□□ -1.2
PTCH1-212ENST00000546744 ZFHX3Q15911 3703 aa7.57□□□□□ -1.2
PTCH1-212ENST00000546744 CAMK2N1Q7Z7J9 78 aa7.57□□□□□ -1.2
PTCH1-212ENST00000546744 AKAP9Q99996 3911 aa7.51□□□□□ -1.21
PTCH1-212ENST00000546744 FLG2Q5D862 2391 aaPredicted RBP7.5□□□□□ -1.21
PTCH1-212ENST00000546744 Q6ZSA8 131 aa7.5□□□□□ -1.21
PTCH1-212ENST00000546744 PANO1I0J062 215 aa7.49□□□□□ -1.21
PTCH1-212ENST00000546744 CUBNO60494 3623 aa7.46□□□□□ -1.21
PTCH1-212ENST00000546744 STAB2Q8WWQ8 2551 aa7.46□□□□□ -1.22
PTCH1-212ENST00000546744 FBN1P35555 2871 aaKnown RBP7.46□□□□□ -1.22
PTCH1-212ENST00000546744 DMBT1Q9UGM3 2413 aaPredicted RBP7.45□□□□□ -1.22
PTCH1-212ENST00000546744 RPS29P62273 56 aaKnown RBP7.44□□□□□ -1.22
PTCH1-212ENST00000546744 R4GN34 69 aa7.44□□□□□ -1.22
PTCH1-212ENST00000546744 A8MU10 97 aa7.43□□□□□ -1.22
PTCH1-212ENST00000546744 KRTAP1-5Q9BYS1 174 aa7.42□□□□□ -1.22
PTCH1-212ENST00000546744 TENM3Q9P273 2699 aa7.41□□□□□ -1.22
PTCH1-212ENST00000546744 ADM2Q7Z4H4 148 aa7.41□□□□□ -1.22
PTCH1-212ENST00000546744 SMR3BP02814 79 aaPredicted RBP7.4□□□□□ -1.23
PTCH1-212ENST00000546744 TRRAPQ9Y4A5 3859 aa7.39□□□□□ -1.23
PTCH1-212ENST00000546744 PKD1L1Q8TDX9 2849 aa7.38□□□□□ -1.23
PTCH1-212ENST00000546744 NOTCH2NLQ7Z3S9 236 aa7.38□□□□□ -1.23
PTCH1-212ENST00000546744 KRTAP13-1Q8IUC0 172 aa7.35□□□□□ -1.23
PTCH1-212ENST00000546744 J3QL48 77 aa7.34□□□□□ -1.23
PTCH1-212ENST00000546744 M0QZ58 72 aa7.33□□□□□ -1.24
PTCH1-212ENST00000546744 KRTAP11-1Q8IUC1 163 aa7.33□□□□□ -1.24
PTCH1-212ENST00000546744 KRTAP7-1Q8IUC3 87 aa7.31□□□□□ -1.24
PTCH1-212ENST00000546744 NDUFAF8A1L188 74 aa7.31□□□□□ -1.24
PTCH1-212ENST00000546744 A8MUU9 505 aa7.27□□□□□ -1.25
PTCH1-212ENST00000546744 SEC61BP60468 96 aaKnown RBP7.22□□□□□ -1.25
PTCH1-212ENST00000546744 KRTAP21-3Q3LHN1 58 aa7.2□□□□□ -1.26
PTCH1-212ENST00000546744 C20orf166-AS1Q96NR2 134 aa7.19□□□□□ -1.26
PTCH1-212ENST00000546744 Q6ZRN7 208 aaPredicted RBP7.15□□□□□ -1.26
PTCH1-212ENST00000546744 PLAC4Q8WY50 150 aa7.14□□□□□ -1.27
PTCH1-212ENST00000546744 KRTAP10-1P60331 282 aa7.13□□□□□ -1.27
PTCH1-212ENST00000546744 PP632Q6XCG6 107 aa7.13□□□□□ -1.27
PTCH1-212ENST00000546744 KRTAP13-2Q52LG2 175 aa7.06□□□□□ -1.28
PTCH1-212ENST00000546744 KRTAP10-2P60368 255 aa7.06□□□□□ -1.28
PTCH1-212ENST00000546744 TENM2Q9NT68 2774 aa7.05□□□□□ -1.28
PTCH1-212ENST00000546744 TGP01266 2768 aa7.02□□□□□ -1.29
PTCH1-212ENST00000546744 H0YAA0 97 aa7.01□□□□□ -1.29
PTCH1-212ENST00000546744 P0C880 135 aa6.98□□□□□ -1.29
PTCH1-212ENST00000546744 HUWE1Q7Z6Z7 4374 aaKnown RBP6.93□□□□□ -1.3
PTCH1-212ENST00000546744 TNP1P09430 55 aa6.93□□□□□ -1.3
PTCH1-212ENST00000546744 M0R2T5 61 aa6.91□□□□□ -1.3
PTCH1-212ENST00000546744 FBN3Q75N90 2809 aa6.91□□□□□ -1.3
PTCH1-212ENST00000546744 Q5VSD8 79 aa6.91□□□□□ -1.3
PTCH1-212ENST00000546744 KRTAP13-3Q3SY46 172 aa6.88□□□□□ -1.31
PTCH1-212ENST00000546744 MEGF8Q7Z7M0 2845 aa6.87□□□□□ -1.31
PTCH1-212ENST00000546744 ANK2Q01484 3957 aa6.85□□□□□ -1.31
PTCH1-212ENST00000546744 DNAH9Q9NYC9 4486 aa6.83□□□□□ -1.32
PTCH1-212ENST00000546744 COL7A1Q02388 2944 aa6.82□□□□□ -1.32
PTCH1-212ENST00000546744 C10orf95Q9H7T3 257 aa6.79□□□□□ -1.32
PTCH1-212ENST00000546744 CMYA5Q8N3K9 4069 aa6.79□□□□□ -1.32
PTCH1-212ENST00000546744 DNAH3Q8TD57 4116 aa6.76□□□□□ -1.33
PTCH1-212ENST00000546744 KRTAP1-4P0C5Y4 121 aa6.75□□□□□ -1.33
PTCH1-212ENST00000546744 DNHD1Q96M86 4753 aa6.74□□□□□ -1.33
PTCH1-212ENST00000546744 PRKDCP78527 4128 aaKnown RBP6.66□□□□□ -1.34
PTCH1-212ENST00000546744 PLECQ15149 4684 aaKnown RBP6.66□□□□□ -1.34
PTCH1-212ENST00000546744 SRRM2Q9UQ35 2752 aaKnown RBP6.63□□□□□ -1.35
PTCH1-212ENST00000546744 XP32Q5T750 250 aa6.58□□□□□ -1.36
PTCH1-212ENST00000546744 STARD9Q9P2P6 4700 aa6.57□□□□□ -1.36
PTCH1-212ENST00000546744 KRTAP10-8P60410 259 aa6.55□□□□□ -1.36
PTCH1-212ENST00000546744 VPS13DQ5THJ4 4388 aa6.52□□□□□ -1.37
PTCH1-212ENST00000546744 DNAH10Q8IVF4 4471 aa6.51□□□□□ -1.37
PTCH1-212ENST00000546744 CSMD3Q7Z407 3707 aa6.51□□□□□ -1.37
PTCH1-212ENST00000546744 A0A1B0GVY2 172 aa6.49□□□□□ -1.37
PTCH1-212ENST00000546744 TPRXLQ17RH7 258 aa6.48□□□□□ -1.37
PTCH1-212ENST00000546744 DNAH1Q9P2D7 4330 aa6.48□□□□□ -1.37
PTCH1-212ENST00000546744 ALMS1Q8TCU4 4167 aa6.44□□□□□ -1.38
PTCH1-212ENST00000546744 KRTAP13-4Q3LI77 160 aa6.43□□□□□ -1.38
PTCH1-212ENST00000546744 DYNC2H1Q8NCM8 4307 aaKnown RBP6.42□□□□□ -1.38
PTCH1-212ENST00000546744 LYSTQ99698 3801 aa6.41□□□□□ -1.38
PTCH1-212ENST00000546744 KRTAP12-1P59990 96 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms