RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 NISCHQ9Y2I1 1504 aa23.32■■□□□ 1.32
PTCH1-212ENST00000546744 PELP1Q8IZL8 1130 aaKnown RBP20.83■□□□□ 0.92
PTCH1-212ENST00000546744 MYT1Q01538 1121 aa20.76■□□□□ 0.91
PTCH1-212ENST00000546744 DCAF8L2P0C7V8 631 aa20.55■□□□□ 0.88
PTCH1-212ENST00000546744 SUPT5HO00267 1087 aaKnown RBP20.2■□□□□ 0.82
PTCH1-212ENST00000546744 ZEB1P37275 1124 aaPredicted RBP20.12■□□□□ 0.81
PTCH1-212ENST00000546744 CENPBP07199 599 aaPredicted RBP20.04■□□□□ 0.8
PTCH1-212ENST00000546744 SHROOM4Q9ULL8 1493 aa19.99■□□□□ 0.79
PTCH1-212ENST00000546744 CCDC180Q9P1Z9 1646 aa19.96■□□□□ 0.79
PTCH1-212ENST00000546744 PCGF6Q9BYE7 350 aa19.74■□□□□ 0.75
PTCH1-212ENST00000546744 CCER1Q8TC90 406 aaPredicted RBP19.71■□□□□ 0.75
PTCH1-212ENST00000546744 ERICH6Q7L0X2 663 aa19.53■□□□□ 0.72
PTCH1-212ENST00000546744 ZCCHC6Q5VYS8 1495 aaKnown RBP19.51■□□□□ 0.71
PTCH1-212ENST00000546744 HRCP23327 699 aa19.49■□□□□ 0.71
PTCH1-212ENST00000546744 ABCC9O60706 1549 aa19.48■□□□□ 0.71
PTCH1-212ENST00000546744 APLP2Q06481 763 aa19.44■□□□□ 0.7
PTCH1-212ENST00000546744 NEFLP07196 543 aa19.21■□□□□ 0.67
PTCH1-212ENST00000546744 TRIM26Q12899 539 aaPredicted RBP19.2■□□□□ 0.66
PTCH1-212ENST00000546744 TTBK1Q5TCY1 1321 aaPredicted RBP19.01■□□□□ 0.63
PTCH1-212ENST00000546744 DCAF1Q9Y4B6 1507 aa18.99■□□□□ 0.63
PTCH1-212ENST00000546744 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
PTCH1-212ENST00000546744 TRIM41Q8WV44 630 aa18.94■□□□□ 0.62
PTCH1-212ENST00000546744 FAM9AQ8IZU1 332 aaPredicted RBP18.88■□□□□ 0.61
PTCH1-212ENST00000546744 SCRIBQ14160 1630 aa18.86■□□□□ 0.61
PTCH1-212ENST00000546744 YTHDC1Q96MU7 727 aaKnown RBP18.85■□□□□ 0.61
PTCH1-212ENST00000546744 NACADO15069 1562 aa18.82■□□□□ 0.6
PTCH1-212ENST00000546744 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
PTCH1-212ENST00000546744 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
PTCH1-212ENST00000546744 PABPN1Q86U42 306 aaKnown RBP eCLIP18.66■□□□□ 0.58
PTCH1-212ENST00000546744 CHIC1Q5VXU3 224 aa18.59■□□□□ 0.57
PTCH1-212ENST00000546744 DIEXFQ68CQ4 756 aaKnown RBP18.56■□□□□ 0.56
PTCH1-212ENST00000546744 CLSPNQ9HAW4 1339 aa18.54■□□□□ 0.56
PTCH1-212ENST00000546744 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
PTCH1-212ENST00000546744 DAXXQ9UER7 740 aaPredicted RBP18.5■□□□□ 0.55
PTCH1-212ENST00000546744 RTL5Q5HYW3 569 aaPredicted RBP18.49■□□□□ 0.55
PTCH1-212ENST00000546744 PPARGC1BQ86YN6 1023 aaKnown RBP18.47■□□□□ 0.55
PTCH1-212ENST00000546744 GTF3C3Q9Y5Q9 886 aa18.42■□□□□ 0.54
PTCH1-212ENST00000546744 ACIN1Q9UKV3 1341 aaKnown RBP18.4■□□□□ 0.54
PTCH1-212ENST00000546744 MYT1LQ9UL68 1186 aa18.34■□□□□ 0.53
PTCH1-212ENST00000546744 RSF1Q96T23 1441 aaPredicted RBP18.27■□□□□ 0.52
PTCH1-212ENST00000546744 LOC105371045A0A1W2PR82 267 aa18.22■□□□□ 0.51
PTCH1-212ENST00000546744 CECR2Q9BXF3 1484 aa18.21■□□□□ 0.51
PTCH1-212ENST00000546744 ZNF316A6NFI3 1004 aaPredicted RBP18.14■□□□□ 0.49
PTCH1-212ENST00000546744 CDK11AQ9UQ88 783 aaPredicted RBP18.13■□□□□ 0.49
PTCH1-212ENST00000546744 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.1■□□□□ 0.49
PTCH1-212ENST00000546744 BAZ1AQ9NRL2 1556 aaPredicted RBP18.09■□□□□ 0.49
PTCH1-212ENST00000546744 MROH2BQ7Z745 1585 aa18.05■□□□□ 0.48
PTCH1-212ENST00000546744 RANGAP1P46060 587 aaPredicted RBP18.04■□□□□ 0.48
PTCH1-212ENST00000546744 HNRNPUL2Q1KMD3 747 aaKnown RBP18.01■□□□□ 0.47
PTCH1-212ENST00000546744 ATP1B4Q9UN42 357 aaPredicted RBP17.99■□□□□ 0.47
PTCH1-212ENST00000546744 ANP32CO43423 234 aa17.9■□□□□ 0.46
PTCH1-212ENST00000546744 GLIPR1L2Q4G1C9 344 aa17.9■□□□□ 0.46
PTCH1-212ENST00000546744 WIZO95785 1651 aa17.87■□□□□ 0.45
PTCH1-212ENST00000546744 ANP32AP39687 249 aaKnown RBP17.86■□□□□ 0.45
PTCH1-212ENST00000546744 SMARCA4P51532 1647 aa17.83■□□□□ 0.44
PTCH1-212ENST00000546744 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
PTCH1-212ENST00000546744 BAZ1BQ9UIG0 1483 aaKnown RBP17.79■□□□□ 0.44
PTCH1-212ENST00000546744 UNC13AQ9UPW8 1703 aa17.79■□□□□ 0.44
PTCH1-212ENST00000546744 BICRAQ9NZM4 1560 aa17.76■□□□□ 0.43
PTCH1-212ENST00000546744 BCANQ96GW7 911 aa17.76■□□□□ 0.43
PTCH1-212ENST00000546744 ITGAEP38570 1179 aa17.74■□□□□ 0.43
PTCH1-212ENST00000546744 NEUROD1Q13562 356 aa17.73■□□□□ 0.43
PTCH1-212ENST00000546744 TOP2AP11388 1531 aaKnown RBP17.7■□□□□ 0.42
PTCH1-212ENST00000546744 SMARCA2P51531 1590 aa17.68■□□□□ 0.42
PTCH1-212ENST00000546744 CCDC88BA6NC98 1476 aa17.65■□□□□ 0.42
PTCH1-212ENST00000546744 ATAD2BQ9ULI0 1458 aa17.64■□□□□ 0.41
PTCH1-212ENST00000546744 ANP32EQ9BTT0 268 aa17.64■□□□□ 0.41
PTCH1-212ENST00000546744 POLR3GLQ9BT43 218 aa17.62■□□□□ 0.41
PTCH1-212ENST00000546744 FKBP8Q14318 412 aa17.56■□□□□ 0.4
PTCH1-212ENST00000546744 EIF5BO60841 1220 aaKnown RBP17.55■□□□□ 0.4
PTCH1-212ENST00000546744 EIF4G1Q04637 1599 aaKnown RBP17.51■□□□□ 0.39
PTCH1-212ENST00000546744 ANP32BQ92688 251 aaKnown RBP17.48■□□□□ 0.39
PTCH1-212ENST00000546744 ZBTB47Q9UFB7 747 aaPredicted RBP17.47■□□□□ 0.39
PTCH1-212ENST00000546744 WRNQ14191 1432 aaPredicted RBP eCLIP17.43■□□□□ 0.38
PTCH1-212ENST00000546744 FAM50AQ14320 339 aaKnown RBP17.43■□□□□ 0.38
PTCH1-212ENST00000546744 CSRNP3Q8WYN3 585 aa17.41■□□□□ 0.38
PTCH1-212ENST00000546744 NCAPD3P42695 1498 aa17.39■□□□□ 0.37
PTCH1-212ENST00000546744 ABCC8Q09428 1581 aa17.39■□□□□ 0.37
PTCH1-212ENST00000546744 UPF2Q9HAU5 1272 aaKnown RBP17.33■□□□□ 0.36
PTCH1-212ENST00000546744 TRIM52Q96A61 297 aa17.31■□□□□ 0.36
PTCH1-212ENST00000546744 PEG3Q9GZU2 1588 aa17.31■□□□□ 0.36
PTCH1-212ENST00000546744 HNRNPUQ00839 825 aaKnown RBP eCLIP17.3■□□□□ 0.36
PTCH1-212ENST00000546744 MIER1Q8N108 512 aa17.28■□□□□ 0.36
PTCH1-212ENST00000546744 DDRGK1Q96HY6 314 aa17.28■□□□□ 0.36
PTCH1-212ENST00000546744 CCDC136Q96JN2 1154 aa17.27■□□□□ 0.36
PTCH1-212ENST00000546744 CNGB1Q14028 1251 aaPredicted RBP17.27■□□□□ 0.35
PTCH1-212ENST00000546744 BCL11AQ9H165 835 aa17.27■□□□□ 0.35
PTCH1-212ENST00000546744 HMGXB3Q12766 1538 aa17.26■□□□□ 0.35
PTCH1-212ENST00000546744 NPM2Q86SE8 214 aaKnown RBP17.25■□□□□ 0.35
PTCH1-212ENST00000546744 TONSLQ96HA7 1378 aa17.25■□□□□ 0.35
PTCH1-212ENST00000546744 ERICH6BQ5W0A0 696 aa17.24■□□□□ 0.35
PTCH1-212ENST00000546744 PPM1GO15355 546 aaPredicted RBP17.24■□□□□ 0.35
PTCH1-212ENST00000546744 CC2D2AQ9P2K1 1620 aa17.24■□□□□ 0.35
PTCH1-212ENST00000546744 EEA1Q15075 1411 aa17.23■□□□□ 0.35
PTCH1-212ENST00000546744 CADPSQ9ULU8 1353 aa17.22■□□□□ 0.35
PTCH1-212ENST00000546744 CANXP27824 592 aaKnown RBP17.21■□□□□ 0.35
PTCH1-212ENST00000546744 NBR1Q14596 966 aa17.2■□□□□ 0.34
PTCH1-212ENST00000546744 SOGA1O94964 1423 aa17.2■□□□□ 0.34
PTCH1-212ENST00000546744 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.18■□□□□ 0.34
PTCH1-212ENST00000546744 DDX10Q13206 875 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms