RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TLN1Q9Y490 2541 aaKnown RBP2.58□□□□□ -2
CD44-236ENST00000533222 APCP25054 2843 aa2.57□□□□□ -2
CD44-236ENST00000533222 TACC2O95359 2948 aa2.57□□□□□ -2
CD44-236ENST00000533222 AKAP9Q99996 3911 aa2.57□□□□□ -2
CD44-236ENST00000533222 SPTAN1Q13813 2472 aaKnown RBP2.57□□□□□ -2
CD44-236ENST00000533222 LCE3AQ5TA76 89 aa2.56□□□□□ -2
CD44-236ENST00000533222 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
CD44-236ENST00000533222 HIVEP3Q5T1R4 2406 aa2.56□□□□□ -2
CD44-236ENST00000533222 HTTP42858 3142 aa2.55□□□□□ -2
CD44-236ENST00000533222 LAMA2P24043 3122 aaKnown RBP2.55□□□□□ -2
CD44-236ENST00000533222 ZFHX4Q86UP3 3567 aa2.55□□□□□ -2
CD44-236ENST00000533222 EP400Q96L91 3159 aa2.55□□□□□ -2
CD44-236ENST00000533222 NF1P21359 2839 aa2.54□□□□□ -2
CD44-236ENST00000533222 MUC6Q6W4X9 2439 aa2.54□□□□□ -2
CD44-236ENST00000533222 DEFB135Q30KP9 77 aa2.53□□□□□ -2
CD44-236ENST00000533222 TLN2Q9Y4G6 2542 aa2.52□□□□□ -2.01
CD44-236ENST00000533222 A0A0D9SG42 100 aa2.52□□□□□ -2.01
CD44-236ENST00000533222 HTN3P15516 51 aa2.52□□□□□ -2.01
CD44-236ENST00000533222 KRTAP5-4Q6L8H1 288 aa2.52□□□□□ -2.01
CD44-236ENST00000533222 MEGF8Q7Z7M0 2845 aa2.52□□□□□ -2.01
CD44-236ENST00000533222 FBN1P35555 2871 aaKnown RBP2.51□□□□□ -2.01
CD44-236ENST00000533222 DCHS1Q96JQ0 3298 aa2.51□□□□□ -2.01
CD44-236ENST00000533222 CCDC168Q8NDH2 2452 aa2.51□□□□□ -2.01
CD44-236ENST00000533222 C5orf42Q9H799 3197 aa2.51□□□□□ -2.01
CD44-236ENST00000533222 LAMA1P25391 3075 aa2.5□□□□□ -2.01
CD44-236ENST00000533222 COL12A1Q99715 3063 aa2.5□□□□□ -2.01
CD44-236ENST00000533222 SPEGQ15772 3267 aa2.5□□□□□ -2.01
CD44-236ENST00000533222 CRYBG3Q68DQ2 2970 aa2.5□□□□□ -2.01
CD44-236ENST00000533222 DMXL2Q8TDJ6 3036 aa2.5□□□□□ -2.01
CD44-236ENST00000533222 VPS13DQ5THJ4 4388 aa2.5□□□□□ -2.01
CD44-236ENST00000533222 COL6A5A8TX70 2615 aa2.5□□□□□ -2.01
CD44-236ENST00000533222 FREM2Q5SZK8 3169 aa2.49□□□□□ -2.01
CD44-236ENST00000533222 SONP18583 2426 aaKnown RBP2.49□□□□□ -2.01
CD44-236ENST00000533222 SRRM2Q9UQ35 2752 aaKnown RBP2.48□□□□□ -2.01
CD44-236ENST00000533222 SETXQ7Z333 2677 aaKnown RBP2.48□□□□□ -2.01
CD44-236ENST00000533222 PTPN13Q12923 2485 aa2.48□□□□□ -2.01
CD44-236ENST00000533222 WDFY3Q8IZQ1 3526 aa2.48□□□□□ -2.01
CD44-236ENST00000533222 SPENQ96T58 3664 aaKnown RBP2.48□□□□□ -2.01
CD44-236ENST00000533222 BAHCC1Q9P281 2608 aa2.47□□□□□ -2.01
CD44-236ENST00000533222 LCE3DQ9BYE3 92 aa2.47□□□□□ -2.01
CD44-236ENST00000533222 REV3LO60673 3130 aa2.47□□□□□ -2.01
CD44-236ENST00000533222 CELSR1Q9NYQ6 3014 aa2.46□□□□□ -2.02
CD44-236ENST00000533222 DMXL1Q9Y485 3027 aa2.46□□□□□ -2.02
CD44-236ENST00000533222 ATMQ13315 3056 aa2.46□□□□□ -2.02
CD44-236ENST00000533222 TEX15Q9BXT5 2789 aa2.46□□□□□ -2.02
CD44-236ENST00000533222 CELSR3Q9NYQ7 3312 aa2.46□□□□□ -2.02
CD44-236ENST00000533222 JMJD1CQ15652 2540 aa2.45□□□□□ -2.02
CD44-236ENST00000533222 UTP20O75691 2785 aaKnown RBP2.45□□□□□ -2.02
CD44-236ENST00000533222 NBPF19A0A087WUL8 3843 aa2.45□□□□□ -2.02
CD44-236ENST00000533222 CENPEQ02224 2701 aa2.44□□□□□ -2.02
CD44-236ENST00000533222 DEFB4AO15263 64 aa2.44□□□□□ -2.02
CD44-236ENST00000533222 NIPBLQ6KC79 2804 aaeCLIP2.44□□□□□ -2.02
CD44-236ENST00000533222 CEP290O15078 2479 aa2.44□□□□□ -2.02
CD44-236ENST00000533222 USP9XQ93008 2570 aaPredicted RBP2.43□□□□□ -2.02
CD44-236ENST00000533222 SETD2Q9BYW2 2564 aaPredicted RBP2.43□□□□□ -2.02
CD44-236ENST00000533222 LAMA3Q16787 3333 aa2.43□□□□□ -2.02
CD44-236ENST00000533222 HRNRQ86YZ3 2850 aaPredicted RBP2.42□□□□□ -2.02
CD44-236ENST00000533222 KRTAP13-2Q52LG2 175 aa2.42□□□□□ -2.02
CD44-236ENST00000533222 CSMD1Q96PZ7 3565 aa2.42□□□□□ -2.02
CD44-236ENST00000533222 ZFYVE26Q68DK2 2539 aa2.41□□□□□ -2.02
CD44-236ENST00000533222 OBSCNQ5VST9 7968 aa2.41□□□□□ -2.02
CD44-236ENST00000533222 BSNQ9UPA5 3926 aa2.41□□□□□ -2.02
CD44-236ENST00000533222 BRCA2P51587 3418 aa2.4□□□□□ -2.02
CD44-236ENST00000533222 LAMA5O15230 3695 aa2.4□□□□□ -2.03
CD44-236ENST00000533222 DOPEY1Q5JWR5 2465 aa2.4□□□□□ -2.03
CD44-236ENST00000533222 MTORP42345 2549 aa2.39□□□□□ -2.03
CD44-236ENST00000533222 DCHS2Q6V1P9 2916 aa2.39□□□□□ -2.03
CD44-236ENST00000533222 CDH23Q9H251 3354 aa2.39□□□□□ -2.03
CD44-236ENST00000533222 DNAH1Q9P2D7 4330 aa2.38□□□□□ -2.03
CD44-236ENST00000533222 SMG1Q96Q15 3661 aaKnown RBP2.38□□□□□ -2.03
CD44-236ENST00000533222 MYO9AB2RTY4 2548 aa2.38□□□□□ -2.03
CD44-236ENST00000533222 LRRK2Q5S007 2527 aa2.38□□□□□ -2.03
CD44-236ENST00000533222 TENM4Q6N022 2769 aa2.38□□□□□ -2.03
CD44-236ENST00000533222 HELZ2Q9BYK8 2649 aaKnown RBP2.38□□□□□ -2.03
CD44-236ENST00000533222 ITPR3Q14573 2671 aa2.37□□□□□ -2.03
CD44-236ENST00000533222 KRTAP5-5Q701N2 237 aaPredicted RBP2.37□□□□□ -2.03
CD44-236ENST00000533222 PKD1L2Q7Z442 2459 aa2.37□□□□□ -2.03
CD44-236ENST00000533222 LOC400499M0QZD8 3231 aa2.37□□□□□ -2.03
CD44-236ENST00000533222 VCANP13611 3396 aa2.36□□□□□ -2.03
CD44-236ENST00000533222 GCN1Q92616 2671 aaKnown RBP2.36□□□□□ -2.03
CD44-236ENST00000533222 CHD8Q9HCK8 2581 aa2.36□□□□□ -2.03
CD44-236ENST00000533222 ACANP16112 2415 aa2.36□□□□□ -2.03
CD44-236ENST00000533222 CFAP46Q8IYW2 2715 aa2.35□□□□□ -2.03
CD44-236ENST00000533222 UNC79Q9P2D8 2635 aa2.35□□□□□ -2.03
CD44-236ENST00000533222 TRRAPQ9Y4A5 3859 aa2.34□□□□□ -2.03
CD44-236ENST00000533222 ADGRG4Q8IZF6 3080 aa2.34□□□□□ -2.03
CD44-236ENST00000533222 DNAH11Q96DT5 4516 aa2.34□□□□□ -2.03
CD44-236ENST00000533222 CEP295Q9C0D2 2601 aa2.34□□□□□ -2.04
CD44-236ENST00000533222 HECTD1Q9ULT8 2610 aa2.34□□□□□ -2.04
CD44-236ENST00000533222 DMBT1Q9UGM3 2413 aaPredicted RBP2.33□□□□□ -2.04
CD44-236ENST00000533222 TGP01266 2768 aa2.33□□□□□ -2.04
CD44-236ENST00000533222 C9orf92A6NGG3 77 aa2.33□□□□□ -2.04
CD44-236ENST00000533222 TNP1P09430 55 aa2.33□□□□□ -2.04
CD44-236ENST00000533222 SMR3AQ99954 134 aa2.33□□□□□ -2.04
CD44-236ENST00000533222 USP9YO00507 2555 aaPredicted RBP2.32□□□□□ -2.04
CD44-236ENST00000533222 KRTAP4-3Q9BYR4 195 aa2.32□□□□□ -2.04
CD44-236ENST00000533222 TTC28Q96AY4 2481 aa2.32□□□□□ -2.04
CD44-236ENST00000533222 PIEZO1Q92508 2521 aa2.32□□□□□ -2.04
CD44-236ENST00000533222 NBEAL1Q6ZS30 2694 aa2.32□□□□□ -2.04
CD44-236ENST00000533222 ASPMQ8IZT6 3477 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms