RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 AEBP2Q6ZN18 517 aaPredicted RBP20.89■□□□□ 0.93
CD44-236ENST00000533222 CHIC1Q5VXU3 224 aa20.46■□□□□ 0.87
CD44-236ENST00000533222 PHF23Q9BUL5 403 aaPredicted RBP18.08■□□□□ 0.48
CD44-236ENST00000533222 SENP3Q9H4L4 574 aaPredicted RBP17.55■□□□□ 0.4
CD44-236ENST00000533222 PLPPR3Q6T4P5 718 aa16.63■□□□□ 0.25
CD44-236ENST00000533222 FOXD1Q16676 465 aa16.37■□□□□ 0.21
CD44-236ENST00000533222 PPP6R1Q9UPN7 881 aa15.92■□□□□ 0.14
CD44-236ENST00000533222 ADRA2BP18089 450 aa15.9■□□□□ 0.14
CD44-236ENST00000533222 PIAS4Q8N2W9 510 aaPredicted RBP15.44■□□□□ 0.06
CD44-236ENST00000533222 MSH5O43196 834 aa14.91□□□□□ -0.02
CD44-236ENST00000533222 PPP4R3CPQ6ZMV5 832 aa14.73□□□□□ -0.05
CD44-236ENST00000533222 KCNA4P22459 653 aa14.63□□□□□ -0.07
CD44-236ENST00000533222 MAPK8IP2Q13387 824 aaPredicted RBP14.4□□□□□ -0.1
CD44-236ENST00000533222 SCAF1Q9H7N4 1312 aaKnown RBP14.35□□□□□ -0.11
CD44-236ENST00000533222 NCBP3Q53F19 620 aaKnown RBP14.28□□□□□ -0.12
CD44-236ENST00000533222 CNKSR2Q8WXI2 1034 aa14.22□□□□□ -0.13
CD44-236ENST00000533222 NPM3O75607 178 aaKnown RBP14.21□□□□□ -0.13
CD44-236ENST00000533222 DMRT2Q9Y5R5 561 aa14.07□□□□□ -0.16
CD44-236ENST00000533222 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
CD44-236ENST00000533222 SLC4A1APQ9BWU0 796 aaKnown RBP13.9□□□□□ -0.18
CD44-236ENST00000533222 HOXD11P31277 338 aaPredicted RBP13.83□□□□□ -0.2
CD44-236ENST00000533222 EHMT2Q96KQ7 1210 aa13.77□□□□□ -0.21
CD44-236ENST00000533222 DNAJC5BQ9UF47 199 aa13.64□□□□□ -0.23
CD44-236ENST00000533222 ZBTB22O15209 634 aa13.52□□□□□ -0.25
CD44-236ENST00000533222 CSRNP3Q8WYN3 585 aa13.51□□□□□ -0.25
CD44-236ENST00000533222 DCAF8L1A6NGE4 600 aa13.48□□□□□ -0.25
CD44-236ENST00000533222 POTEDQ86YR6 584 aa13.41□□□□□ -0.26
CD44-236ENST00000533222 SLC4A2P04920 1241 aa13.4□□□□□ -0.26
CD44-236ENST00000533222 FOXD4L1Q9NU39 408 aa13.34□□□□□ -0.27
CD44-236ENST00000533222 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.17□□□□□ -0.3
CD44-236ENST00000533222 MYCNP04198 464 aaPredicted RBP13.06□□□□□ -0.32
CD44-236ENST00000533222 U3KPZ7 1027 aaPredicted RBP13.05□□□□□ -0.32
CD44-236ENST00000533222 RNF39Q9H2S5 420 aa12.86□□□□□ -0.35
CD44-236ENST00000533222 ATF5Q9Y2D1 282 aaPredicted RBP12.83□□□□□ -0.36
CD44-236ENST00000533222 ATXN8OSP0DMR3 200 aa12.78□□□□□ -0.36
CD44-236ENST00000533222 SAMD1Q6SPF0 538 aaPredicted RBP12.77□□□□□ -0.37
CD44-236ENST00000533222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.76□□□□□ -0.37
CD44-236ENST00000533222 HNRNPUL2Q1KMD3 747 aaKnown RBP12.76□□□□□ -0.37
CD44-236ENST00000533222 SPINK5Q9NQ38 1064 aaPredicted RBP12.67□□□□□ -0.38
CD44-236ENST00000533222 C1QBPQ07021 282 aaKnown RBP12.64□□□□□ -0.39
CD44-236ENST00000533222 APLP2Q06481 763 aa12.57□□□□□ -0.4
CD44-236ENST00000533222 CAPN15O75808 1086 aa12.54□□□□□ -0.4
CD44-236ENST00000533222 TRHP20396 242 aaPredicted RBP12.54□□□□□ -0.4
CD44-236ENST00000533222 ZNF219Q9P2Y4 722 aaPredicted RBP12.51□□□□□ -0.41
CD44-236ENST00000533222 ABCB7O75027 752 aa12.4□□□□□ -0.42
CD44-236ENST00000533222 CACNB1Q02641 598 aaPredicted RBP12.39□□□□□ -0.43
CD44-236ENST00000533222 POLA2Q14181 598 aa12.36□□□□□ -0.43
CD44-236ENST00000533222 DSG3P32926 999 aa12.3□□□□□ -0.44
CD44-236ENST00000533222 MKRN4PQ13434 485 aaPredicted RBP12.26□□□□□ -0.45
CD44-236ENST00000533222 FKBP8Q14318 412 aa12.19□□□□□ -0.46
CD44-236ENST00000533222 FBLN2P98095 1184 aa12.11□□□□□ -0.47
CD44-236ENST00000533222 ZBTB12Q9Y330 459 aaPredicted RBP12.05□□□□□ -0.48
CD44-236ENST00000533222 OSCARQ8IYS5 282 aa11.99□□□□□ -0.49
CD44-236ENST00000533222 SPDYE4A6NLX3 237 aa11.98□□□□□ -0.49
CD44-236ENST00000533222 PROM2Q8N271 834 aa11.81□□□□□ -0.52
CD44-236ENST00000533222 ZNF692Q9BU19 519 aaPredicted RBP11.8□□□□□ -0.52
CD44-236ENST00000533222 SPDYE2BA6NHP3 402 aa11.79□□□□□ -0.52
CD44-236ENST00000533222 SPDYE6P0CI01 402 aa11.79□□□□□ -0.52
CD44-236ENST00000533222 SPDYE2Q495Y8 402 aa11.79□□□□□ -0.52
CD44-236ENST00000533222 SSUH2Q9Y2M2 353 aa11.77□□□□□ -0.53
CD44-236ENST00000533222 PABPN1Q86U42 306 aaKnown RBP eCLIP11.68□□□□□ -0.54
CD44-236ENST00000533222 RBM42Q9BTD8 480 aaKnown RBP11.61□□□□□ -0.55
CD44-236ENST00000533222 FBXO3Q9UK99 471 aa11.57□□□□□ -0.56
CD44-236ENST00000533222 AKT1S1Q96B36 256 aa11.54□□□□□ -0.56
CD44-236ENST00000533222 VASPP50552 380 aaPredicted RBP11.52□□□□□ -0.57
CD44-236ENST00000533222 REM2Q8IYK8 340 aaPredicted RBP11.49□□□□□ -0.57
CD44-236ENST00000533222 IFNLR1Q8IU57 520 aaPredicted RBP11.41□□□□□ -0.58
CD44-236ENST00000533222 RTN4Q9NQC3 1192 aaKnown RBP11.41□□□□□ -0.58
CD44-236ENST00000533222 CLEC11AQ9Y240 323 aa11.41□□□□□ -0.58
CD44-236ENST00000533222 SPDYE1Q8NFV5 336 aaPredicted RBP11.4□□□□□ -0.58
CD44-236ENST00000533222 STAG3Q9UJ98 1225 aa11.4□□□□□ -0.58
CD44-236ENST00000533222 PITPNM1O00562 1244 aa11.39□□□□□ -0.59
CD44-236ENST00000533222 MIER1Q8N108 512 aa11.32□□□□□ -0.6
CD44-236ENST00000533222 PLCD3Q8N3E9 789 aa11.32□□□□□ -0.6
CD44-236ENST00000533222 AMER1Q5JTC6 1135 aaPredicted RBP11.3□□□□□ -0.6
CD44-236ENST00000533222 PRR29P0C7W0 189 aa11.28□□□□□ -0.6
CD44-236ENST00000533222 KLHL34Q8N239 644 aa11.25□□□□□ -0.61
CD44-236ENST00000533222 CREBZFQ9NS37 354 aa11.24□□□□□ -0.61
CD44-236ENST00000533222 CHADLQ6NUI6 762 aa11.18□□□□□ -0.62
CD44-236ENST00000533222 SPOCK2Q92563 424 aa11.18□□□□□ -0.62
CD44-236ENST00000533222 MNX1P50219 401 aaPredicted RBP11.16□□□□□ -0.62
CD44-236ENST00000533222 PLEKHG5O94827 1062 aa11.15□□□□□ -0.62
CD44-236ENST00000533222 CHRDL2Q6WN34 429 aa11.15□□□□□ -0.62
CD44-236ENST00000533222 FXR2P51116 673 aaKnown RBP eCLIP11.1□□□□□ -0.63
CD44-236ENST00000533222 PKD2Q13563 968 aa11.09□□□□□ -0.63
CD44-236ENST00000533222 ZBTB47Q9UFB7 747 aaPredicted RBP11.09□□□□□ -0.63
CD44-236ENST00000533222 PRKAR2AP13861 404 aaKnown RBP11.08□□□□□ -0.64
CD44-236ENST00000533222 PIP4P2Q8N4L2 257 aa11.08□□□□□ -0.64
CD44-236ENST00000533222 NUBP1P53384 320 aa11.06□□□□□ -0.64
CD44-236ENST00000533222 RASEFQ8IZ41 740 aa11.01□□□□□ -0.65
CD44-236ENST00000533222 FARP1Q9Y4F1 1045 aaPredicted RBP11.01□□□□□ -0.65
CD44-236ENST00000533222 CIZ1Q9ULV3 898 aaPredicted RBP11□□□□□ -0.65
CD44-236ENST00000533222 ECM2O94769 699 aaPredicted RBP10.95□□□□□ -0.66
CD44-236ENST00000533222 NPM1P06748 294 aaKnown RBP eCLIP10.94□□□□□ -0.66
CD44-236ENST00000533222 DCAF8Q5TAQ9 597 aa10.93□□□□□ -0.66
CD44-236ENST00000533222 FAM212AQ96EL1 285 aa10.91□□□□□ -0.66
CD44-236ENST00000533222 RGL2O15211 777 aa10.9□□□□□ -0.66
CD44-236ENST00000533222 GSE1Q14687 1217 aa10.88□□□□□ -0.67
CD44-236ENST00000533222 TSPYL2Q9H2G4 693 aaPredicted RBP10.88□□□□□ -0.67
CD44-236ENST00000533222 DCAF8L2P0C7V8 631 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms