RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 Q8N9P0 234 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-207ENST00000436346 KRTAP10-2P60368 255 aa7.29□□□□□ -1.24
CCDC88A-207ENST00000436346 KRTAP10-1P60331 282 aa7.28□□□□□ -1.24
CCDC88A-207ENST00000436346 DMDP11532 3685 aa7.28□□□□□ -1.24
CCDC88A-207ENST00000436346 Q8NDZ9 215 aa7.27□□□□□ -1.25
CCDC88A-207ENST00000436346 ZFHX3Q15911 3703 aa7.25□□□□□ -1.25
CCDC88A-207ENST00000436346 M0QZ58 72 aa7.24□□□□□ -1.25
CCDC88A-207ENST00000436346 SPRR1AP35321 89 aa7.22□□□□□ -1.25
CCDC88A-207ENST00000436346 LINC00472Q9H8W2 130 aa7.22□□□□□ -1.25
CCDC88A-207ENST00000436346 PLAC4Q8WY50 150 aa7.2□□□□□ -1.26
CCDC88A-207ENST00000436346 SMG1Q96Q15 3661 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-207ENST00000436346 ADM2Q7Z4H4 148 aa7.18□□□□□ -1.26
CCDC88A-207ENST00000436346 OXTP01178 125 aa7.16□□□□□ -1.26
CCDC88A-207ENST00000436346 FP248Q71RG6 208 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-207ENST00000436346 LOC400499M0QZD8 3231 aa7.14□□□□□ -1.27
CCDC88A-207ENST00000436346 LINC01558Q9Y6Z2 57 aa7.12□□□□□ -1.27
CCDC88A-207ENST00000436346 KRTAP26-1Q6PEX3 210 aa7.11□□□□□ -1.27
CCDC88A-207ENST00000436346 SPRR1BP22528 89 aa7.11□□□□□ -1.27
CCDC88A-207ENST00000436346 PRAC1Q96KF2 57 aa7.11□□□□□ -1.27
CCDC88A-207ENST00000436346 TENM2Q9NT68 2774 aa7.1□□□□□ -1.27
CCDC88A-207ENST00000436346 ROMO1P60602 79 aa7.1□□□□□ -1.27
CCDC88A-207ENST00000436346 Q5VV11 94 aa7.1□□□□□ -1.27
CCDC88A-207ENST00000436346 H1FX-AS1Q4G0G2 97 aa7.08□□□□□ -1.28
CCDC88A-207ENST00000436346 RELNP78509 3460 aa7.08□□□□□ -1.28
CCDC88A-207ENST00000436346 RPL37P61927 97 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-207ENST00000436346 A0A087X002 238 aa7.07□□□□□ -1.28
CCDC88A-207ENST00000436346 A0A0A0MQY5 61 aa7.06□□□□□ -1.28
CCDC88A-207ENST00000436346 CYSTM1Q9H1C7 97 aa7.06□□□□□ -1.28
CCDC88A-207ENST00000436346 PANO1I0J062 215 aa7.06□□□□□ -1.28
CCDC88A-207ENST00000436346 Q5XG85 94 aa7.05□□□□□ -1.28
CCDC88A-207ENST00000436346 SRRM2Q9UQ35 2752 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-207ENST00000436346 Q6ZR54 194 aa7.04□□□□□ -1.28
CCDC88A-207ENST00000436346 SPATA8Q6RVD6 105 aa7.03□□□□□ -1.28
CCDC88A-207ENST00000436346 COL7A1Q02388 2944 aa6.98□□□□□ -1.29
CCDC88A-207ENST00000436346 VPS13CQ709C8 3753 aa6.98□□□□□ -1.29
CCDC88A-207ENST00000436346 ZFHX4Q86UP3 3567 aa6.96□□□□□ -1.3
CCDC88A-207ENST00000436346 KRTAP4-16G5E9R7 235 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-207ENST00000436346 FBN1P35555 2871 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-207ENST00000436346 H3BS24 57 aa6.92□□□□□ -1.3
CCDC88A-207ENST00000436346 A8MUU9 505 aa6.91□□□□□ -1.3
CCDC88A-207ENST00000436346 CSMD1Q96PZ7 3565 aa6.9□□□□□ -1.3
CCDC88A-207ENST00000436346 RPS29P62273 56 aaKnown RBP6.88□□□□□ -1.31
CCDC88A-207ENST00000436346 NOTCH2NLQ7Z3S9 236 aa6.87□□□□□ -1.31
CCDC88A-207ENST00000436346 C20orf166-AS1Q96NR2 134 aa6.86□□□□□ -1.31
CCDC88A-207ENST00000436346 Q6ZRN7 208 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-207ENST00000436346 KRTAP11-1Q8IUC1 163 aa6.84□□□□□ -1.32
CCDC88A-207ENST00000436346 ASB16-AS1Q495Z4 193 aa6.83□□□□□ -1.32
CCDC88A-207ENST00000436346 DCHS1Q96JQ0 3298 aa6.82□□□□□ -1.32
CCDC88A-207ENST00000436346 KRTAP29-1A8MX34 341 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-207ENST00000436346 MEGF8Q7Z7M0 2845 aa6.79□□□□□ -1.32
CCDC88A-207ENST00000436346 KRTAP13-2Q52LG2 175 aa6.77□□□□□ -1.33
CCDC88A-207ENST00000436346 TRRAPQ9Y4A5 3859 aa6.74□□□□□ -1.33
CCDC88A-207ENST00000436346 A8MU10 97 aa6.74□□□□□ -1.33
CCDC88A-207ENST00000436346 SVEP1Q4LDE5 3571 aa6.72□□□□□ -1.33
CCDC88A-207ENST00000436346 AKAP9Q99996 3911 aa6.68□□□□□ -1.34
CCDC88A-207ENST00000436346 KRTAP13-1Q8IUC0 172 aa6.65□□□□□ -1.35
CCDC88A-207ENST00000436346 KRTAP7-1Q8IUC3 87 aa6.65□□□□□ -1.35
CCDC88A-207ENST00000436346 KRTAP21-3Q3LHN1 58 aa6.64□□□□□ -1.35
CCDC88A-207ENST00000436346 CUBNO60494 3623 aa6.63□□□□□ -1.35
CCDC88A-207ENST00000436346 TNP1P09430 55 aa6.62□□□□□ -1.35
CCDC88A-207ENST00000436346 C10orf95Q9H7T3 257 aa6.62□□□□□ -1.35
CCDC88A-207ENST00000436346 KRTAP25-1Q3LHN0 102 aa6.62□□□□□ -1.35
CCDC88A-207ENST00000436346 FBN3Q75N90 2809 aa6.55□□□□□ -1.36
CCDC88A-207ENST00000436346 OTOGQ6ZRI0 2925 aa6.55□□□□□ -1.36
CCDC88A-207ENST00000436346 KRTAP16-1A8MUX0 517 aa6.55□□□□□ -1.36
CCDC88A-207ENST00000436346 KRTAP10-8P60410 259 aa6.54□□□□□ -1.36
CCDC88A-207ENST00000436346 A0A1B0GVY2 172 aa6.53□□□□□ -1.36
CCDC88A-207ENST00000436346 BSNQ9UPA5 3926 aa6.51□□□□□ -1.37
CCDC88A-207ENST00000436346 XP32Q5T750 250 aa6.51□□□□□ -1.37
CCDC88A-207ENST00000436346 A6NN06 94 aa6.51□□□□□ -1.37
CCDC88A-207ENST00000436346 NDUFAF8A1L188 74 aa6.48□□□□□ -1.37
CCDC88A-207ENST00000436346 KRTAP10-10P60014 251 aa6.42□□□□□ -1.38
CCDC88A-207ENST00000436346 TPRXLQ17RH7 258 aa6.42□□□□□ -1.38
CCDC88A-207ENST00000436346 CSMD3Q7Z407 3707 aa6.42□□□□□ -1.38
CCDC88A-207ENST00000436346 PRO2289Q9P1D8 64 aa6.41□□□□□ -1.38
CCDC88A-207ENST00000436346 MUC3AQ02505 3323 aa6.39□□□□□ -1.39
CCDC88A-207ENST00000436346 PP632Q6XCG6 107 aa6.38□□□□□ -1.39
CCDC88A-207ENST00000436346 KRTAP1-4P0C5Y4 121 aa6.37□□□□□ -1.39
CCDC88A-207ENST00000436346 CSMD2Q7Z408 3487 aa6.33□□□□□ -1.4
CCDC88A-207ENST00000436346 H0YAA0 97 aa6.28□□□□□ -1.4
CCDC88A-207ENST00000436346 KRTAP13-3Q3SY46 172 aa6.24□□□□□ -1.41
CCDC88A-207ENST00000436346 ZNF469Q96JG9 3925 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-207ENST00000436346 LYSTQ99698 3801 aa6.22□□□□□ -1.41
CCDC88A-207ENST00000436346 P0C880 135 aa6.14□□□□□ -1.43
CCDC88A-207ENST00000436346 KRTAP12-2P59991 146 aa5.96□□□□□ -1.46
CCDC88A-207ENST00000436346 KRTAP13-4Q3LI77 160 aa5.86□□□□□ -1.47
CCDC88A-207ENST00000436346 ANK2Q01484 3957 aa5.84□□□□□ -1.47
CCDC88A-207ENST00000436346 DNAH7Q8WXX0 4024 aa5.84□□□□□ -1.47
CCDC88A-207ENST00000436346 HECTD4Q9Y4D8 3996 aa5.83□□□□□ -1.48
CCDC88A-207ENST00000436346 ALMS1Q8TCU4 4167 aa5.78□□□□□ -1.48
CCDC88A-207ENST00000436346 KRTAP15-1Q3LI76 137 aa5.76□□□□□ -1.49
CCDC88A-207ENST00000436346 KRTAP12-1P59990 96 aa5.75□□□□□ -1.49
CCDC88A-207ENST00000436346 CMYA5Q8N3K9 4069 aa5.73□□□□□ -1.49
CCDC88A-207ENST00000436346 KMT2AQ03164 3969 aa5.66□□□□□ -1.5
CCDC88A-207ENST00000436346 DNAH3Q8TD57 4116 aa5.63□□□□□ -1.51
CCDC88A-207ENST00000436346 VPS13BQ7Z7G8 4022 aa5.58□□□□□ -1.52
CCDC88A-207ENST00000436346 KRTAP3-1Q9BYR8 98 aa5.57□□□□□ -1.52
CCDC88A-207ENST00000436346 ANK3Q12955 4377 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-207ENST00000436346 CRCT1Q9UGL9 99 aa5.57□□□□□ -1.52
CCDC88A-207ENST00000436346 KRTAP10-12P60413 245 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms