RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 DCAF8L2P0C7V8 631 aa21.01■□□□□ 0.95
CCDC88A-207ENST00000436346 NISCHQ9Y2I1 1504 aa19.67■□□□□ 0.74
CCDC88A-207ENST00000436346 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.73
CCDC88A-207ENST00000436346 SHROOM4Q9ULL8 1493 aa19.51■□□□□ 0.71
CCDC88A-207ENST00000436346 EHMT2Q96KQ7 1210 aa19.42■□□□□ 0.7
CCDC88A-207ENST00000436346 PELP1Q8IZL8 1130 aaKnown RBP19.03■□□□□ 0.64
CCDC88A-207ENST00000436346 APLP2Q06481 763 aa19.03■□□□□ 0.64
CCDC88A-207ENST00000436346 FAM9AQ8IZU1 332 aaPredicted RBP18.93■□□□□ 0.62
CCDC88A-207ENST00000436346 TTBK1Q5TCY1 1321 aaPredicted RBP18.79■□□□□ 0.6
CCDC88A-207ENST00000436346 RANGAP1P46060 587 aaPredicted RBP18.62■□□□□ 0.57
CCDC88A-207ENST00000436346 ATP1B4Q9UN42 357 aaPredicted RBP18.49■□□□□ 0.55
CCDC88A-207ENST00000436346 PCGF6Q9BYE7 350 aa18.34■□□□□ 0.53
CCDC88A-207ENST00000436346 ERICH6Q7L0X2 663 aa18.26■□□□□ 0.51
CCDC88A-207ENST00000436346 TRIM41Q8WV44 630 aa18.18■□□□□ 0.5
CCDC88A-207ENST00000436346 UBTFP17480 764 aaKnown RBP18.17■□□□□ 0.5
CCDC88A-207ENST00000436346 CCER1Q8TC90 406 aaPredicted RBP18.15■□□□□ 0.5
CCDC88A-207ENST00000436346 CENPBP07199 599 aaPredicted RBP18.07■□□□□ 0.48
CCDC88A-207ENST00000436346 MYT1LQ9UL68 1186 aa17.96■□□□□ 0.47
CCDC88A-207ENST00000436346 NEFLP07196 543 aa17.95■□□□□ 0.46
CCDC88A-207ENST00000436346 ZEB1P37275 1124 aaPredicted RBP17.93■□□□□ 0.46
CCDC88A-207ENST00000436346 YTHDC1Q96MU7 727 aaKnown RBP17.89■□□□□ 0.46
CCDC88A-207ENST00000436346 CHIC1Q5VXU3 224 aa17.83■□□□□ 0.44
CCDC88A-207ENST00000436346 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.81■□□□□ 0.44
CCDC88A-207ENST00000436346 HNRNPUL2Q1KMD3 747 aaKnown RBP17.81■□□□□ 0.44
CCDC88A-207ENST00000436346 PPARGC1BQ86YN6 1023 aaKnown RBP17.78■□□□□ 0.44
CCDC88A-207ENST00000436346 POLR3GLQ9BT43 218 aa17.73■□□□□ 0.43
CCDC88A-207ENST00000436346 ITGAEP38570 1179 aa17.67■□□□□ 0.42
CCDC88A-207ENST00000436346 DAXXQ9UER7 740 aaPredicted RBP17.65■□□□□ 0.42
CCDC88A-207ENST00000436346 SLC4A1APQ9BWU0 796 aaKnown RBP17.61■□□□□ 0.41
CCDC88A-207ENST00000436346 CNGB1Q14028 1251 aaPredicted RBP17.53■□□□□ 0.4
CCDC88A-207ENST00000436346 MYT1Q01538 1121 aa17.43■□□□□ 0.38
CCDC88A-207ENST00000436346 TRIM26Q12899 539 aaPredicted RBP17.35■□□□□ 0.37
CCDC88A-207ENST00000436346 ABCC9O60706 1549 aa17.32■□□□□ 0.36
CCDC88A-207ENST00000436346 ZNF316A6NFI3 1004 aaPredicted RBP17.25■□□□□ 0.35
CCDC88A-207ENST00000436346 CLSPNQ9HAW4 1339 aa17.23■□□□□ 0.35
CCDC88A-207ENST00000436346 FAM50AQ14320 339 aaKnown RBP17.22■□□□□ 0.35
CCDC88A-207ENST00000436346 LOC105371045A0A1W2PR82 267 aa17.12■□□□□ 0.33
CCDC88A-207ENST00000436346 PABPN1Q86U42 306 aaKnown RBP eCLIP17.12■□□□□ 0.33
CCDC88A-207ENST00000436346 FBLN2P98095 1184 aa17.11■□□□□ 0.33
CCDC88A-207ENST00000436346 TRIM52Q96A61 297 aa17.1■□□□□ 0.33
CCDC88A-207ENST00000436346 SCRIBQ14160 1630 aa17.1■□□□□ 0.33
CCDC88A-207ENST00000436346 SLC24A1O60721 1099 aa17.09■□□□□ 0.33
CCDC88A-207ENST00000436346 HRCP23327 699 aa17.09■□□□□ 0.33
CCDC88A-207ENST00000436346 ZNF326Q5BKZ1 582 aaKnown RBP17.06■□□□□ 0.32
CCDC88A-207ENST00000436346 BCANQ96GW7 911 aa17.04■□□□□ 0.32
CCDC88A-207ENST00000436346 NEUROD1Q13562 356 aa16.99■□□□□ 0.31
CCDC88A-207ENST00000436346 RTL5Q5HYW3 569 aaPredicted RBP16.99■□□□□ 0.31
CCDC88A-207ENST00000436346 BCL11AQ9H165 835 aa16.97■□□□□ 0.31
CCDC88A-207ENST00000436346 ZBTB47Q9UFB7 747 aaPredicted RBP16.96■□□□□ 0.31
CCDC88A-207ENST00000436346 CANXP27824 592 aaKnown RBP16.89■□□□□ 0.3
CCDC88A-207ENST00000436346 DIEXFQ68CQ4 756 aaKnown RBP16.88■□□□□ 0.29
CCDC88A-207ENST00000436346 CCDC180Q9P1Z9 1646 aa16.87■□□□□ 0.29
CCDC88A-207ENST00000436346 ARID3CA6NKF2 412 aa16.86■□□□□ 0.29
CCDC88A-207ENST00000436346 NEFMP07197 916 aa16.8■□□□□ 0.28
CCDC88A-207ENST00000436346 PLPPR3Q6T4P5 718 aa16.78■□□□□ 0.28
CCDC88A-207ENST00000436346 ANP32CO43423 234 aa16.76■□□□□ 0.27
CCDC88A-207ENST00000436346 ESF1Q9H501 851 aaKnown RBP16.76■□□□□ 0.27
CCDC88A-207ENST00000436346 ZNF777Q9ULD5 760 aaPredicted RBP16.69■□□□□ 0.26
CCDC88A-207ENST00000436346 P3H3Q8IVL6 736 aa16.68■□□□□ 0.26
CCDC88A-207ENST00000436346 STAG3Q9UJ98 1225 aa16.64■□□□□ 0.25
CCDC88A-207ENST00000436346 CDK11AQ9UQ88 783 aaPredicted RBP16.58■□□□□ 0.24
CCDC88A-207ENST00000436346 CHGAP10645 457 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-207ENST00000436346 SCAF1Q9H7N4 1312 aaKnown RBP16.47■□□□□ 0.23
CCDC88A-207ENST00000436346 HSP90AA1P07900 732 aaKnown RBP16.46■□□□□ 0.23
CCDC88A-207ENST00000436346 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
CCDC88A-207ENST00000436346 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
CCDC88A-207ENST00000436346 ANP32AP39687 249 aaKnown RBP16.43■□□□□ 0.22
CCDC88A-207ENST00000436346 A0A0G2JS52 829 aa16.42■□□□□ 0.22
CCDC88A-207ENST00000436346 TONSLQ96HA7 1378 aa16.41■□□□□ 0.22
CCDC88A-207ENST00000436346 NPM2Q86SE8 214 aaKnown RBP16.4■□□□□ 0.22
CCDC88A-207ENST00000436346 GTF3C3Q9Y5Q9 886 aa16.39■□□□□ 0.21
CCDC88A-207ENST00000436346 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.37■□□□□ 0.219e-7■■■□□ 15.8
CCDC88A-207ENST00000436346 KAT6BQ8WYB5 2073 aa16.36■□□□□ 0.21
CCDC88A-207ENST00000436346 ANP32BQ92688 251 aaKnown RBP16.33■□□□□ 0.21
CCDC88A-207ENST00000436346 SENP3Q9H4L4 574 aaPredicted RBP16.3■□□□□ 0.2
CCDC88A-207ENST00000436346 UPF2Q9HAU5 1272 aaKnown RBP16.3■□□□□ 0.2
CCDC88A-207ENST00000436346 PLEKHG5O94827 1062 aa16.28■□□□□ 0.2
CCDC88A-207ENST00000436346 ZBTB7CA1YPR0 619 aa16.24■□□□□ 0.19
CCDC88A-207ENST00000436346 C14orf37Q86TY3 774 aa16.24■□□□□ 0.19
CCDC88A-207ENST00000436346 CSRNP3Q8WYN3 585 aa16.23■□□□□ 0.19
CCDC88A-207ENST00000436346 CHIC2Q9UKJ5 165 aa16.21■□□□□ 0.19
CCDC88A-207ENST00000436346 SALL2Q9Y467 1007 aaPredicted RBP16.2■□□□□ 0.18
CCDC88A-207ENST00000436346 ZCCHC6Q5VYS8 1495 aaKnown RBP16.2■□□□□ 0.18
CCDC88A-207ENST00000436346 CHMP7Q8WUX9 453 aaPredicted RBP16.2■□□□□ 0.18
CCDC88A-207ENST00000436346 ERCC6Q03468 1493 aa16.19■□□□□ 0.18
CCDC88A-207ENST00000436346 FAM9BQ8IZU0 186 aa16.19■□□□□ 0.18
CCDC88A-207ENST00000436346 PPP1R15AO75807 674 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-207ENST00000436346 MYH16Q9H6N6 1097 aa16.17■□□□□ 0.18
CCDC88A-207ENST00000436346 KDM2AQ9Y2K7 1162 aa16.17■□□□□ 0.18
CCDC88A-207ENST00000436346 MTUS2Q5JR59 1369 aa16.16■□□□□ 0.18
CCDC88A-207ENST00000436346 WDR43Q15061 677 aaKnown RBP eCLIP16.16■□□□□ 0.185e-6■□□□□ 10.7
CCDC88A-207ENST00000436346 HNRNPUQ00839 825 aaKnown RBP eCLIP16.15■□□□□ 0.18
CCDC88A-207ENST00000436346 ARID4BQ4LE39 1312 aaPredicted RBP16.14■□□□□ 0.17
CCDC88A-207ENST00000436346 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.12■□□□□ 0.17
CCDC88A-207ENST00000436346 TMC1Q8TDI8 760 aa16.12■□□□□ 0.17
CCDC88A-207ENST00000436346 ARXQ96QS3 562 aa16.09■□□□□ 0.17
CCDC88A-207ENST00000436346 HAP1P54257 671 aaPredicted RBP16.09■□□□□ 0.17
CCDC88A-207ENST00000436346 CDK11BP21127 795 aaKnown RBP16.09■□□□□ 0.17
CCDC88A-207ENST00000436346 FKBP8Q14318 412 aa16.08■□□□□ 0.16
CCDC88A-207ENST00000436346 BAZ1BQ9UIG0 1483 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms