RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 NOTCH2NLQ7Z3S9 236 aa7.62□□□□□ -1.19
USP49-203ENST00000394253 TNRC18O15417 2968 aaPredicted RBP7.61□□□□□ -1.19
USP49-203ENST00000394253 UNC80Q8N2C7 3258 aa7.6□□□□□ -1.19
USP49-203ENST00000394253 P0C880 135 aa7.59□□□□□ -1.19
USP49-203ENST00000394253 ZZEF1O43149 2961 aa7.58□□□□□ -1.2
USP49-203ENST00000394253 KRTAP10-1P60331 282 aa7.53□□□□□ -1.2
USP49-203ENST00000394253 KRTAP1-5Q9BYS1 174 aa7.52□□□□□ -1.21
USP49-203ENST00000394253 KRTAP1-3Q8IUG1 177 aa7.51□□□□□ -1.21
USP49-203ENST00000394253 CELSR3Q9NYQ7 3312 aa7.51□□□□□ -1.21
USP49-203ENST00000394253 NBEAQ8NFP9 2946 aa7.49□□□□□ -1.21
USP49-203ENST00000394253 KRTAP1-1Q07627 177 aa7.47□□□□□ -1.21
USP49-203ENST00000394253 DCHS2Q6V1P9 2916 aa7.46□□□□□ -1.21
USP49-203ENST00000394253 KRTAP10-2P60368 255 aa7.45□□□□□ -1.22
USP49-203ENST00000394253 BOD1L1Q8NFC6 3051 aa7.45□□□□□ -1.22
USP49-203ENST00000394253 ADGRG4Q8IZF6 3080 aa7.44□□□□□ -1.22
USP49-203ENST00000394253 CELSR1Q9NYQ6 3014 aa7.43□□□□□ -1.22
USP49-203ENST00000394253 HTTP42858 3142 aa7.43□□□□□ -1.22
USP49-203ENST00000394253 DMXL1Q9Y485 3027 aa7.42□□□□□ -1.22
USP49-203ENST00000394253 ATMQ13315 3056 aa7.41□□□□□ -1.22
USP49-203ENST00000394253 Q6ZRN7 208 aaPredicted RBP7.41□□□□□ -1.22
USP49-203ENST00000394253 DNAH14Q0VDD8 3507 aa7.41□□□□□ -1.22
USP49-203ENST00000394253 KRTAP10-8P60410 259 aa7.4□□□□□ -1.22
USP49-203ENST00000394253 PRO2289Q9P1D8 64 aa7.4□□□□□ -1.22
USP49-203ENST00000394253 MKI67P46013 3256 aaKnown RBP7.34□□□□□ -1.23
USP49-203ENST00000394253 H0YAA0 97 aa7.33□□□□□ -1.24
USP49-203ENST00000394253 VWFP04275 2813 aa7.33□□□□□ -1.24
USP49-203ENST00000394253 USP34Q70CQ2 3546 aa7.31□□□□□ -1.24
USP49-203ENST00000394253 COL6A3P12111 3177 aa7.3□□□□□ -1.24
USP49-203ENST00000394253 TENM2Q9NT68 2774 aa7.28□□□□□ -1.24
USP49-203ENST00000394253 PKD1L1Q8TDX9 2849 aa7.23□□□□□ -1.25
USP49-203ENST00000394253 ZANQ9Y493 2812 aa7.2□□□□□ -1.26
USP49-203ENST00000394253 KRTAP13-2Q52LG2 175 aa7.18□□□□□ -1.26
USP49-203ENST00000394253 KRTAP13-1Q8IUC0 172 aa7.18□□□□□ -1.26
USP49-203ENST00000394253 FBN2P35556 2912 aa7.17□□□□□ -1.26
USP49-203ENST00000394253 VCANP13611 3396 aa7.14□□□□□ -1.27
USP49-203ENST00000394253 TENM4Q6N022 2769 aa7.13□□□□□ -1.27
USP49-203ENST00000394253 COL7A1Q02388 2944 aa7.13□□□□□ -1.27
USP49-203ENST00000394253 LAMA3Q16787 3333 aa7.1□□□□□ -1.27
USP49-203ENST00000394253 CFAP47Q6ZTR5 3102 aa7.08□□□□□ -1.28
USP49-203ENST00000394253 MXRA5Q9NR99 2828 aa7.08□□□□□ -1.28
USP49-203ENST00000394253 BRCA2P51587 3418 aa7.08□□□□□ -1.28
USP49-203ENST00000394253 SPEGQ15772 3267 aa7.05□□□□□ -1.28
USP49-203ENST00000394253 SZT2Q5T011 3432 aa7.04□□□□□ -1.28
USP49-203ENST00000394253 INE1O15225 51 aa6.98□□□□□ -1.29
USP49-203ENST00000394253 KRTAP7-1Q8IUC3 87 aa6.98□□□□□ -1.29
USP49-203ENST00000394253 XP32Q5T750 250 aa6.97□□□□□ -1.29
USP49-203ENST00000394253 KRTAP10-10P60014 251 aa6.95□□□□□ -1.3
USP49-203ENST00000394253 ZFHX4Q86UP3 3567 aa6.94□□□□□ -1.3
USP49-203ENST00000394253 TPRXLQ17RH7 258 aa6.92□□□□□ -1.3
USP49-203ENST00000394253 KRTAP12-2P59991 146 aa6.91□□□□□ -1.3
USP49-203ENST00000394253 ZFHX3Q15911 3703 aa6.9□□□□□ -1.3
USP49-203ENST00000394253 KRTAP13-4Q3LI77 160 aa6.9□□□□□ -1.3
USP49-203ENST00000394253 SPTBN5Q9NRC6 3674 aaKnown RBP6.87□□□□□ -1.31
USP49-203ENST00000394253 A0A1B0GVY2 172 aa6.87□□□□□ -1.31
USP49-203ENST00000394253 OTOGQ6ZRI0 2925 aa6.83□□□□□ -1.32
USP49-203ENST00000394253 MEGF8Q7Z7M0 2845 aa6.83□□□□□ -1.32
USP49-203ENST00000394253 HRNRQ86YZ3 2850 aaPredicted RBP6.83□□□□□ -1.32
USP49-203ENST00000394253 CDH23Q9H251 3354 aa6.82□□□□□ -1.32
USP49-203ENST00000394253 MYO15AQ9UKN7 3530 aa6.75□□□□□ -1.33
USP49-203ENST00000394253 WDFY3Q8IZQ1 3526 aa6.75□□□□□ -1.33
USP49-203ENST00000394253 NBPF19A0A087WUL8 3843 aa6.71□□□□□ -1.34
USP49-203ENST00000394253 KRTAP15-1Q3LI76 137 aa6.7□□□□□ -1.34
USP49-203ENST00000394253 ASPMQ8IZT6 3477 aa6.68□□□□□ -1.34
USP49-203ENST00000394253 KRTAP1-4P0C5Y4 121 aa6.68□□□□□ -1.34
USP49-203ENST00000394253 LOC400499M0QZD8 3231 aa6.67□□□□□ -1.34
USP49-203ENST00000394253 EYSQ5T1H1 3165 aa6.64□□□□□ -1.35
USP49-203ENST00000394253 KRTAP13-3Q3SY46 172 aa6.62□□□□□ -1.35
USP49-203ENST00000394253 KRTAP12-1P59990 96 aa6.62□□□□□ -1.35
USP49-203ENST00000394253 LAMA5O15230 3695 aa6.59□□□□□ -1.35
USP49-203ENST00000394253 SMG1Q96Q15 3661 aaKnown RBP6.56□□□□□ -1.36
USP49-203ENST00000394253 FBN3Q75N90 2809 aa6.56□□□□□ -1.36
USP49-203ENST00000394253 SPENQ96T58 3664 aaKnown RBP6.49□□□□□ -1.37
USP49-203ENST00000394253 RELNP78509 3460 aa6.47□□□□□ -1.37
USP49-203ENST00000394253 FBN1P35555 2871 aaKnown RBP6.42□□□□□ -1.38
USP49-203ENST00000394253 DMDP11532 3685 aa6.39□□□□□ -1.39
USP49-203ENST00000394253 KRTAP21-3Q3LHN1 58 aa6.38□□□□□ -1.39
USP49-203ENST00000394253 CSMD1Q96PZ7 3565 aa6.27□□□□□ -1.41
USP49-203ENST00000394253 DCHS1Q96JQ0 3298 aa6.26□□□□□ -1.41
USP49-203ENST00000394253 KRTAP10-12P60413 245 aa6.22□□□□□ -1.41
USP49-203ENST00000394253 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
USP49-203ENST00000394253 VPS13CQ709C8 3753 aa6.16□□□□□ -1.42
USP49-203ENST00000394253 AKAP9Q99996 3911 aa6.14□□□□□ -1.43
USP49-203ENST00000394253 CUBNO60494 3623 aa6.12□□□□□ -1.43
USP49-203ENST00000394253 KRTAP10-6P60371 365 aaPredicted RBP6.11□□□□□ -1.43
USP49-203ENST00000394253 TRRAPQ9Y4A5 3859 aa6.1□□□□□ -1.43
USP49-203ENST00000394253 CRCT1Q9UGL9 99 aa6.09□□□□□ -1.43
USP49-203ENST00000394253 KRTAP3-1Q9BYR8 98 aa6.06□□□□□ -1.44
USP49-203ENST00000394253 CSMD3Q7Z407 3707 aa6.03□□□□□ -1.44
USP49-203ENST00000394253 KRTAP12-3P60328 96 aa6.02□□□□□ -1.45
USP49-203ENST00000394253 MUC3AQ02505 3323 aa5.93□□□□□ -1.46
USP49-203ENST00000394253 SVEP1Q4LDE5 3571 aa5.9□□□□□ -1.47
USP49-203ENST00000394253 KRTAP10-5P60370 271 aa5.89□□□□□ -1.47
USP49-203ENST00000394253 ALMS1Q8TCU4 4167 aa5.83□□□□□ -1.48
USP49-203ENST00000394253 CSMD2Q7Z408 3487 aa5.76□□□□□ -1.49
USP49-203ENST00000394253 KRTAP3-2Q9BYR7 98 aa5.75□□□□□ -1.49
USP49-203ENST00000394253 LCE3AQ5TA76 89 aa5.73□□□□□ -1.49
USP49-203ENST00000394253 LYSTQ99698 3801 aa5.7□□□□□ -1.5
USP49-203ENST00000394253 KRTAP3-3Q9BYR6 98 aa5.69□□□□□ -1.5
USP49-203ENST00000394253 BSNQ9UPA5 3926 aa5.66□□□□□ -1.5
USP49-203ENST00000394253 KRTAP8-1Q8IUC2 63 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms