RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 A6NN06 94 aa12.6□□□□□ -0.39
UPF3A-202ENST00000375299 NOTCH2NLQ7Z3S9 236 aa12.6□□□□□ -0.39
UPF3A-202ENST00000375299 MDFIQ99750 246 aa12.6□□□□□ -0.39
UPF3A-202ENST00000375299 NUPR2A6NF83 97 aa12.57□□□□□ -0.4
UPF3A-202ENST00000375299 PSORS1C2Q9UIG4 136 aa12.55□□□□□ -0.4
UPF3A-202ENST00000375299 ANAPC11Q9NYG5 84 aa12.54□□□□□ -0.4
UPF3A-202ENST00000375299 DNAH8Q96JB1 4490 aa12.53□□□□□ -0.4
UPF3A-202ENST00000375299 IGLV5-52A0A0A0MRZ9 124 aa12.53□□□□□ -0.4
UPF3A-202ENST00000375299 SPINK7P58062 85 aa12.52□□□□□ -0.4
UPF3A-202ENST00000375299 VPS13DQ5THJ4 4388 aa12.51□□□□□ -0.41
UPF3A-202ENST00000375299 ZNF861PO60384 105 aa12.49□□□□□ -0.41
UPF3A-202ENST00000375299 KRTAP13-3Q3SY46 172 aa12.49□□□□□ -0.41
UPF3A-202ENST00000375299 Q5W150 140 aa12.48□□□□□ -0.41
UPF3A-202ENST00000375299 A0A087WTM6 91 aa12.46□□□□□ -0.41
UPF3A-202ENST00000375299 SPINK6Q6UWN8 80 aa12.46□□□□□ -0.41
UPF3A-202ENST00000375299 PRR26Q8N8Z3 221 aa12.45□□□□□ -0.42
UPF3A-202ENST00000375299 RBM12B-AS1Q9P1G2 102 aa12.45□□□□□ -0.42
UPF3A-202ENST00000375299 FRAS1Q86XX4 4008 aa12.45□□□□□ -0.42
UPF3A-202ENST00000375299 STARD9Q9P2P6 4700 aa12.45□□□□□ -0.42
UPF3A-202ENST00000375299 ALMS1Q8TCU4 4167 aa12.42□□□□□ -0.42
UPF3A-202ENST00000375299 RTL8CO15255 209 aa12.42□□□□□ -0.42
UPF3A-202ENST00000375299 HECTD4Q9Y4D8 3996 aa12.41□□□□□ -0.42
UPF3A-202ENST00000375299 C7orf65Q6ZTY9 151 aa12.41□□□□□ -0.42
UPF3A-202ENST00000375299 ACYP2P14621 99 aa12.39□□□□□ -0.43
UPF3A-202ENST00000375299 PRKDCP78527 4128 aaKnown RBP12.37□□□□□ -0.43
UPF3A-202ENST00000375299 DNAH17Q9UFH2 4485 aa12.37□□□□□ -0.43
UPF3A-202ENST00000375299 C8orf87E5RJ46 101 aa12.35□□□□□ -0.43
UPF3A-202ENST00000375299 CIRBP-AS1Q8TBR5 109 aa12.34□□□□□ -0.43
UPF3A-202ENST00000375299 DNAH2Q9P225 4427 aa12.32□□□□□ -0.44
UPF3A-202ENST00000375299 DMAC1Q96GE9 116 aa12.31□□□□□ -0.44
UPF3A-202ENST00000375299 IGLV7-43P04211 117 aa12.3□□□□□ -0.44
UPF3A-202ENST00000375299 KMT2AQ03164 3969 aa12.26□□□□□ -0.45
UPF3A-202ENST00000375299 SSBP3-AS1Q7Z2R9 100 aa12.25□□□□□ -0.45
UPF3A-202ENST00000375299 FBN3Q75N90 2809 aa12.24□□□□□ -0.45
UPF3A-202ENST00000375299 FAM229AH3BQW9 127 aa12.23□□□□□ -0.45
UPF3A-202ENST00000375299 DNHD1Q96M86 4753 aa12.23□□□□□ -0.45
UPF3A-202ENST00000375299 LINC00313P59037 77 aa12.22□□□□□ -0.45
UPF3A-202ENST00000375299 MEGF8Q7Z7M0 2845 aa12.2□□□□□ -0.46
UPF3A-202ENST00000375299 IGKV2-30P06310 120 aa12.19□□□□□ -0.46
UPF3A-202ENST00000375299 KRTAP21-3Q3LHN1 58 aa12.19□□□□□ -0.46
UPF3A-202ENST00000375299 RETNLBQ9BQ08 111 aa12.18□□□□□ -0.46
UPF3A-202ENST00000375299 A0A1B0GU69 56 aa12.18□□□□□ -0.46
UPF3A-202ENST00000375299 C1orf134Q5TEV5 83 aa12.15□□□□□ -0.46
UPF3A-202ENST00000375299 TGP01266 2768 aa12.13□□□□□ -0.47
UPF3A-202ENST00000375299 SPATA8Q6RVD6 105 aa12.09□□□□□ -0.47
UPF3A-202ENST00000375299 DNAH11Q96DT5 4516 aa12.07□□□□□ -0.48
UPF3A-202ENST00000375299 KRTAP16-1A8MUX0 517 aa12.07□□□□□ -0.48
UPF3A-202ENST00000375299 KRTAP13-2Q52LG2 175 aa12.04□□□□□ -0.48
UPF3A-202ENST00000375299 LY6G6CO95867 125 aa12.03□□□□□ -0.48
UPF3A-202ENST00000375299 PRAC1Q96KF2 57 aa12.03□□□□□ -0.48
UPF3A-202ENST00000375299 PLA2G1BP04054 148 aaKnown RBP12.03□□□□□ -0.48
UPF3A-202ENST00000375299 DNAH6Q9C0G6 4158 aa12.01□□□□□ -0.49
UPF3A-202ENST00000375299 MIR22HGQ0VDD5 57 aa12□□□□□ -0.49
UPF3A-202ENST00000375299 UQCR11O14957 56 aa12□□□□□ -0.49
UPF3A-202ENST00000375299 DNAH5Q8TE73 4624 aa11.98□□□□□ -0.49
UPF3A-202ENST00000375299 IGKV2D-30A0A075B6S6 120 aa11.98□□□□□ -0.49
UPF3A-202ENST00000375299 ADM2Q7Z4H4 148 aa11.97□□□□□ -0.49
UPF3A-202ENST00000375299 KRTAP10-2P60368 255 aa11.96□□□□□ -0.49
UPF3A-202ENST00000375299 KRTAP1-4P0C5Y4 121 aa11.83□□□□□ -0.52
UPF3A-202ENST00000375299 PKD1P98161 4303 aa11.83□□□□□ -0.52
UPF3A-202ENST00000375299 LRP1BQ9NZR2 4599 aa11.83□□□□□ -0.52
UPF3A-202ENST00000375299 Q6ZSA8 131 aa11.82□□□□□ -0.52
UPF3A-202ENST00000375299 KRTAP10-1P60331 282 aa11.81□□□□□ -0.52
UPF3A-202ENST00000375299 FAT2Q9NYQ8 4349 aa11.77□□□□□ -0.52
UPF3A-202ENST00000375299 LINC01554Q52M75 96 aa11.77□□□□□ -0.53
UPF3A-202ENST00000375299 C4orf48Q5BLP8 95 aa11.75□□□□□ -0.53
UPF3A-202ENST00000375299 HYDINQ4G0P3 5121 aa11.75□□□□□ -0.53
UPF3A-202ENST00000375299 SPINK1P00995 79 aa11.74□□□□□ -0.53
UPF3A-202ENST00000375299 Q8N1X5 172 aa11.71□□□□□ -0.53
UPF3A-202ENST00000375299 TYMSOSQ8TAI1 123 aa11.69□□□□□ -0.54
UPF3A-202ENST00000375299 VPS13BQ7Z7G8 4022 aa11.65□□□□□ -0.54
UPF3A-202ENST00000375299 CSAG1Q6PB30 78 aa11.64□□□□□ -0.55
UPF3A-202ENST00000375299 H0YAA0 97 aa11.53□□□□□ -0.56
UPF3A-202ENST00000375299 LINC00304Q8N9R0 145 aa11.53□□□□□ -0.56
UPF3A-202ENST00000375299 RPS29P62273 56 aaKnown RBP11.52□□□□□ -0.57
UPF3A-202ENST00000375299 SACSQ9NZJ4 4579 aa11.48□□□□□ -0.57
UPF3A-202ENST00000375299 A8MUU9 505 aa11.47□□□□□ -0.57
UPF3A-202ENST00000375299 PKHD1P08F94 4074 aa11.46□□□□□ -0.57
UPF3A-202ENST00000375299 A0A1B0GU33 70 aa11.41□□□□□ -0.58
UPF3A-202ENST00000375299 C20orf166-AS1Q96NR2 134 aa11.41□□□□□ -0.58
UPF3A-202ENST00000375299 KRTAP3-1Q9BYR8 98 aa11.41□□□□□ -0.58
UPF3A-202ENST00000375299 C9orf92A6NGG3 77 aa11.39□□□□□ -0.59
UPF3A-202ENST00000375299 H1FX-AS1Q4G0G2 97 aa11.38□□□□□ -0.59
UPF3A-202ENST00000375299 KRTAP25-1Q3LHN0 102 aa11.3□□□□□ -0.6
UPF3A-202ENST00000375299 DYNC1H1Q14204 4646 aaKnown RBP11.3□□□□□ -0.6
UPF3A-202ENST00000375299 SMR3BP02814 79 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-202ENST00000375299 PKHD1L1Q86WI1 4243 aa11.28□□□□□ -0.6
UPF3A-202ENST00000375299 FAT1Q14517 4588 aa11.2□□□□□ -0.62
UPF3A-202ENST00000375299 COX6B2Q6YFQ2 88 aa11.18□□□□□ -0.62
UPF3A-202ENST00000375299 APOBP04114 4563 aaKnown RBP11.18□□□□□ -0.62
UPF3A-202ENST00000375299 A0A1B0GVY2 172 aa11.17□□□□□ -0.62
UPF3A-202ENST00000375299 KRTAP10-4P60372 401 aaPredicted RBP11.17□□□□□ -0.62
UPF3A-202ENST00000375299 K7ERS5 55 aa11.14□□□□□ -0.63
UPF3A-202ENST00000375299 H3BS24 57 aa11.12□□□□□ -0.63
UPF3A-202ENST00000375299 ROMO1P60602 79 aa11.04□□□□□ -0.64
UPF3A-202ENST00000375299 CRIPTQ9P021 101 aa11.01□□□□□ -0.65
UPF3A-202ENST00000375299 RYR2Q92736 4967 aa10.98□□□□□ -0.65
UPF3A-202ENST00000375299 FLG2Q5D862 2391 aaPredicted RBP10.95□□□□□ -0.66
UPF3A-202ENST00000375299 KRTAP10-6P60371 365 aaPredicted RBP10.94□□□□□ -0.66
UPF3A-202ENST00000375299 RPL37P61927 97 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms