RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 H1FX-AS1Q4G0G2 97 aa5.82□□□□□ -1.48
CUX1-203ENST00000360264 XIRP2A4UGR9 3374 aa5.81□□□□□ -1.48
CUX1-203ENST00000360264 EYSQ5T1H1 3165 aa5.8□□□□□ -1.48
CUX1-203ENST00000360264 PANO1I0J062 215 aa5.78□□□□□ -1.48
CUX1-203ENST00000360264 RPS29P62273 56 aaKnown RBP5.77□□□□□ -1.49
CUX1-203ENST00000360264 Q5XG85 94 aa5.76□□□□□ -1.49
CUX1-203ENST00000360264 KRTAP10-1P60331 282 aa5.75□□□□□ -1.49
CUX1-203ENST00000360264 ADM2Q7Z4H4 148 aa5.73□□□□□ -1.49
CUX1-203ENST00000360264 PRAC1Q96KF2 57 aa5.73□□□□□ -1.49
CUX1-203ENST00000360264 KRTAP26-1Q6PEX3 210 aa5.73□□□□□ -1.49
CUX1-203ENST00000360264 AKAP9Q99996 3911 aa5.69□□□□□ -1.5
CUX1-203ENST00000360264 Q8NDZ9 215 aa5.67□□□□□ -1.5
CUX1-203ENST00000360264 HRNRQ86YZ3 2850 aaPredicted RBP5.67□□□□□ -1.5
CUX1-203ENST00000360264 KRTAP10-2P60368 255 aa5.67□□□□□ -1.5
CUX1-203ENST00000360264 KRTAP1-5Q9BYS1 174 aa5.67□□□□□ -1.5
CUX1-203ENST00000360264 CYSTM1Q9H1C7 97 aa5.62□□□□□ -1.51
CUX1-203ENST00000360264 SPATA8Q6RVD6 105 aa5.61□□□□□ -1.51
CUX1-203ENST00000360264 LAMA3Q16787 3333 aa5.6□□□□□ -1.51
CUX1-203ENST00000360264 KRTAP4-16G5E9R7 235 aaPredicted RBP5.6□□□□□ -1.51
CUX1-203ENST00000360264 A8MUU9 505 aa5.59□□□□□ -1.51
CUX1-203ENST00000360264 SPEGQ15772 3267 aa5.58□□□□□ -1.52
CUX1-203ENST00000360264 VCANP13611 3396 aa5.57□□□□□ -1.52
CUX1-203ENST00000360264 KRTAP29-1A8MX34 341 aaPredicted RBP5.57□□□□□ -1.52
CUX1-203ENST00000360264 KRTAP16-1A8MUX0 517 aa5.56□□□□□ -1.52
CUX1-203ENST00000360264 UNC80Q8N2C7 3258 aa5.56□□□□□ -1.52
CUX1-203ENST00000360264 MEGF8Q7Z7M0 2845 aa5.55□□□□□ -1.52
CUX1-203ENST00000360264 C20orf166-AS1Q96NR2 134 aa5.55□□□□□ -1.52
CUX1-203ENST00000360264 A0A087X002 238 aa5.53□□□□□ -1.52
CUX1-203ENST00000360264 DNAH1Q9P2D7 4330 aa5.53□□□□□ -1.52
CUX1-203ENST00000360264 TNP1P09430 55 aa5.51□□□□□ -1.53
CUX1-203ENST00000360264 KRTAP25-1Q3LHN0 102 aa5.49□□□□□ -1.53
CUX1-203ENST00000360264 NOTCH2NLQ7Z3S9 236 aa5.47□□□□□ -1.53
CUX1-203ENST00000360264 OTOGQ6ZRI0 2925 aa5.47□□□□□ -1.53
CUX1-203ENST00000360264 PP632Q6XCG6 107 aa5.47□□□□□ -1.53
CUX1-203ENST00000360264 Q6ZRN7 208 aaPredicted RBP5.46□□□□□ -1.54
CUX1-203ENST00000360264 TRRAPQ9Y4A5 3859 aa5.43□□□□□ -1.54
CUX1-203ENST00000360264 KRTAP21-3Q3LHN1 58 aa5.42□□□□□ -1.54
CUX1-203ENST00000360264 ZFHX3Q15911 3703 aa5.42□□□□□ -1.54
CUX1-203ENST00000360264 FBN3Q75N90 2809 aa5.41□□□□□ -1.54
CUX1-203ENST00000360264 A8MU10 97 aa5.38□□□□□ -1.55
CUX1-203ENST00000360264 BRCA2P51587 3418 aa5.37□□□□□ -1.55
CUX1-203ENST00000360264 A6NN06 94 aa5.37□□□□□ -1.55
CUX1-203ENST00000360264 KRTAP13-1Q8IUC0 172 aa5.37□□□□□ -1.55
CUX1-203ENST00000360264 NDUFAF8A1L188 74 aa5.34□□□□□ -1.55
CUX1-203ENST00000360264 C10orf95Q9H7T3 257 aa5.32□□□□□ -1.56
CUX1-203ENST00000360264 KRTAP13-2Q52LG2 175 aa5.32□□□□□ -1.56
CUX1-203ENST00000360264 KRTAP11-1Q8IUC1 163 aa5.32□□□□□ -1.56
CUX1-203ENST00000360264 NBPF19A0A087WUL8 3843 aa5.31□□□□□ -1.56
CUX1-203ENST00000360264 DNAH14Q0VDD8 3507 aa5.31□□□□□ -1.56
CUX1-203ENST00000360264 DCHS1Q96JQ0 3298 aa5.28□□□□□ -1.56
CUX1-203ENST00000360264 BSNQ9UPA5 3926 aa5.27□□□□□ -1.57
CUX1-203ENST00000360264 PRO2289Q9P1D8 64 aa5.27□□□□□ -1.57
CUX1-203ENST00000360264 TPRXLQ17RH7 258 aa5.25□□□□□ -1.57
CUX1-203ENST00000360264 USP34Q70CQ2 3546 aa5.25□□□□□ -1.57
CUX1-203ENST00000360264 KRTAP7-1Q8IUC3 87 aa5.23□□□□□ -1.57
CUX1-203ENST00000360264 KRTAP10-8P60410 259 aa5.22□□□□□ -1.57
CUX1-203ENST00000360264 LOC400499M0QZD8 3231 aa5.21□□□□□ -1.58
CUX1-203ENST00000360264 CMYA5Q8N3K9 4069 aa5.2□□□□□ -1.58
CUX1-203ENST00000360264 XP32Q5T750 250 aa5.18□□□□□ -1.58
CUX1-203ENST00000360264 MYO15AQ9UKN7 3530 aa5.18□□□□□ -1.58
CUX1-203ENST00000360264 ZNF469Q96JG9 3925 aaPredicted RBP5.16□□□□□ -1.58
CUX1-203ENST00000360264 FRAS1Q86XX4 4008 aa5.16□□□□□ -1.58
CUX1-203ENST00000360264 DNAH3Q8TD57 4116 aa5.14□□□□□ -1.59
CUX1-203ENST00000360264 SZT2Q5T011 3432 aa5.14□□□□□ -1.59
CUX1-203ENST00000360264 ALMS1Q8TCU4 4167 aa5.13□□□□□ -1.59
CUX1-203ENST00000360264 DNAH7Q8WXX0 4024 aa5.11□□□□□ -1.59
CUX1-203ENST00000360264 CDH23Q9H251 3354 aa5.11□□□□□ -1.59
CUX1-203ENST00000360264 ANK2Q01484 3957 aa5.11□□□□□ -1.59
CUX1-203ENST00000360264 P0C880 135 aa5.11□□□□□ -1.59
CUX1-203ENST00000360264 KRTAP10-10P60014 251 aa5.11□□□□□ -1.59
CUX1-203ENST00000360264 KRTAP1-4P0C5Y4 121 aa5.09□□□□□ -1.59
CUX1-203ENST00000360264 H0YAA0 97 aa5.08□□□□□ -1.6
CUX1-203ENST00000360264 HUWE1Q7Z6Z7 4374 aaKnown RBP5.05□□□□□ -1.6
CUX1-203ENST00000360264 SPTBN5Q9NRC6 3674 aaKnown RBP5.03□□□□□ -1.6
CUX1-203ENST00000360264 ZFHX4Q86UP3 3567 aa5.01□□□□□ -1.61
CUX1-203ENST00000360264 KRTAP13-3Q3SY46 172 aa4.98□□□□□ -1.61
CUX1-203ENST00000360264 HECTD4Q9Y4D8 3996 aa4.98□□□□□ -1.61
CUX1-203ENST00000360264 A0A1B0GVY2 172 aa4.95□□□□□ -1.62
CUX1-203ENST00000360264 LAMA5O15230 3695 aa4.94□□□□□ -1.62
CUX1-203ENST00000360264 LYSTQ99698 3801 aa4.94□□□□□ -1.62
CUX1-203ENST00000360264 DNAH6Q9C0G6 4158 aa4.94□□□□□ -1.62
CUX1-203ENST00000360264 ANK3Q12955 4377 aaKnown RBP4.94□□□□□ -1.62
CUX1-203ENST00000360264 DNAH10Q8IVF4 4471 aa4.92□□□□□ -1.62
CUX1-203ENST00000360264 VPS13CQ709C8 3753 aa4.92□□□□□ -1.62
CUX1-203ENST00000360264 DNAH2Q9P225 4427 aa4.88□□□□□ -1.63
CUX1-203ENST00000360264 VPS13DQ5THJ4 4388 aa4.85□□□□□ -1.63
CUX1-203ENST00000360264 DMDP11532 3685 aa4.84□□□□□ -1.63
CUX1-203ENST00000360264 KRTAP13-4Q3LI77 160 aa4.83□□□□□ -1.64
CUX1-203ENST00000360264 KMT2AQ03164 3969 aa4.81□□□□□ -1.64
CUX1-203ENST00000360264 DNAH11Q96DT5 4516 aa4.81□□□□□ -1.64
CUX1-203ENST00000360264 FLGP20930 4061 aaPredicted RBP4.77□□□□□ -1.65
CUX1-203ENST00000360264 PRKDCP78527 4128 aaKnown RBP4.75□□□□□ -1.65
CUX1-203ENST00000360264 KRTAP12-2P59991 146 aa4.73□□□□□ -1.65
CUX1-203ENST00000360264 SPENQ96T58 3664 aaKnown RBP4.73□□□□□ -1.65
CUX1-203ENST00000360264 VPS13BQ7Z7G8 4022 aa4.72□□□□□ -1.65
CUX1-203ENST00000360264 SMG1Q96Q15 3661 aaKnown RBP4.72□□□□□ -1.65
CUX1-203ENST00000360264 KRTAP15-1Q3LI76 137 aa4.7□□□□□ -1.66
CUX1-203ENST00000360264 PLECQ15149 4684 aaKnown RBP4.69□□□□□ -1.66
CUX1-203ENST00000360264 WDFY3Q8IZQ1 3526 aa4.69□□□□□ -1.66
CUX1-203ENST00000360264 KRTAP12-1P59990 96 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms