RNA–Protein interactions for RNA: YKR100C

SKG1, Transcript of Transmembrane protein with a role in cell wall polymer composition, yeast

Gene SKG1, Length 1,068 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKG1	YKR100C	SET1	P38827	1080 aa	Known RBP	12.62	□□□□□ -0.39
SKG1	YKR100C	FKH1	P40466	484 aa		12.62	□□□□□ -0.39
SKG1	YKR100C	ATH1	P48016	1211 aa		12.62	□□□□□ -0.39
SKG1	YKR100C	NOP53	Q12080	455 aa	Known RBP	12.6	□□□□□ -0.39
SKG1	YKR100C	GUT1	P32190	709 aa		12.59	□□□□□ -0.39
SKG1	YKR100C	AIR2	Q12476	344 aa	Known RBP	12.58	□□□□□ -0.4
SKG1	YKR100C	RTG1	P32607	177 aa		12.57	□□□□□ -0.4
SKG1	YKR100C	YNL035C	P53962	389 aa	Known RBP	12.55	□□□□□ -0.4
SKG1	YKR100C	DMA1	P38823	416 aa		12.54	□□□□□ -0.4
SKG1	YKR100C	YEL023C	P39992	682 aa		12.52	□□□□□ -0.41
SKG1	YKR100C	JIP4	Q03361	876 aa		12.5	□□□□□ -0.41
SKG1	YKR100C	DAN4	P47179	1161 aa		12.48	□□□□□ -0.41
SKG1	YKR100C	SEC61	P32915	480 aa		12.47	□□□□□ -0.41
SKG1	YKR100C	PTC4	P38089	393 aa		12.46	□□□□□ -0.41
SKG1	YKR100C	NCR1	Q12200	1170 aa		12.46	□□□□□ -0.41
SKG1	YKR100C	SOL3	P38858	249 aa		12.45	□□□□□ -0.42
SKG1	YKR100C	YJL171C	P46992	396 aa		12.43	□□□□□ -0.42
SKG1	YKR100C	NST1	P53935	1240 aa		12.42	□□□□□ -0.42
SKG1	YKR100C	YGR273C	P53329	174 aa		12.36	□□□□□ -0.43
SKG1	YKR100C	TFG1	P41895	735 aa	Predicted RBP	12.35	□□□□□ -0.43
SKG1	YKR100C	BMT6	Q12291	365 aa		12.34	□□□□□ -0.43
SKG1	YKR100C	IFH1	P39520	1085 aa		12.33	□□□□□ -0.44
SKG1	YKR100C	MPH3	P0CE00	602 aa		12.3	□□□□□ -0.44
SKG1	YKR100C	YPR148C	Q06523	435 aa		12.3	□□□□□ -0.44
SKG1	YKR100C	AI4	P03878	556 aa		12.29	□□□□□ -0.44
SKG1	YKR100C	ILV3	P39522	585 aa	Known RBP	12.28	□□□□□ -0.44
SKG1	YKR100C	YDL129W	Q07555	291 aa		12.28	□□□□□ -0.44
SKG1	YKR100C	PML39	Q03760	334 aa		12.26	□□□□□ -0.45
SKG1	YKR100C	SAP30	P38429	201 aa		12.25	□□□□□ -0.45
SKG1	YKR100C	VPS70	P47161	811 aa		12.23	□□□□□ -0.45
SKG1	YKR100C	RQC2	Q12532	1038 aa	Known RBP	12.21	□□□□□ -0.45
SKG1	YKR100C	VHR2	P40041	505 aa		12.18	□□□□□ -0.46
SKG1	YKR100C	MID1	P41821	548 aa		12.18	□□□□□ -0.46
SKG1	YKR100C	KEX1	P09620	729 aa		12.17	□□□□□ -0.46
SKG1	YKR100C	UBP14	P38237	781 aa	Known RBP	12.17	□□□□□ -0.46
SKG1	YKR100C	YLR326W	Q06170	240 aa	Known RBP	12.16	□□□□□ -0.46
SKG1	YKR100C	SAS10	Q12136	610 aa	Predicted RBP	12.12	□□□□□ -0.47
SKG1	YKR100C	REF2	P42073	533 aa	Predicted RBP	12.1	□□□□□ -0.47
SKG1	YKR100C	SLI15	P38283	698 aa		12.09	□□□□□ -0.47
SKG1	YKR100C	YDR344C	Q05510	147 aa		12.08	□□□□□ -0.48
SKG1	YKR100C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	12.05	□□□□□ -0.48	not detected
SKG1	YKR100C	YDR090C	Q03193	310 aa		12.04	□□□□□ -0.48
SKG1	YKR100C	PEX29	Q03370	554 aa		12.04	□□□□□ -0.48
SKG1	YKR100C	RAD54	P32863	898 aa		12.03	□□□□□ -0.48
SKG1	YKR100C	PRE3	P38624	215 aa		12.01	□□□□□ -0.49
SKG1	YKR100C	CKB1	P43639	278 aa		12.01	□□□□□ -0.49
SKG1	YKR100C	MPC54	Q08550	464 aa		12.01	□□□□□ -0.49
SKG1	YKR100C	CHL1	P22516	861 aa	Predicted RBP	11.99	□□□□□ -0.49
SKG1	YKR100C	TY1B-DR4	Q07793	1604 aa		11.97	□□□□□ -0.49
SKG1	YKR100C	ARH1	P48360	493 aa		11.97	□□□□□ -0.49
SKG1	YKR100C	ELP4	Q02884	456 aa	Known RBP	11.97	□□□□□ -0.49
SKG1	YKR100C	KIC1	P38692	1080 aa		11.95	□□□□□ -0.5
SKG1	YKR100C	DPL1	Q05567	589 aa		11.93	□□□□□ -0.5
SKG1	YKR100C	CDC73	Q06697	393 aa		11.93	□□□□□ -0.5
SKG1	YKR100C	MAK21	Q12176	1025 aa	Known RBP	11.92	□□□□□ -0.5
SKG1	YKR100C	COX6	P00427	148 aa		11.91	□□□□□ -0.5
SKG1	YKR100C	PBS2	P08018	668 aa		11.91	□□□□□ -0.5
SKG1	YKR100C	NMA111	P53920	997 aa		11.9	□□□□□ -0.5
SKG1	YKR100C	HAP5	Q02516	242 aa		11.9	□□□□□ -0.5
SKG1	YKR100C	SPT23	P35210	1082 aa		11.82	□□□□□ -0.52
SKG1	YKR100C	ISU2	Q12056	156 aa		11.82	□□□□□ -0.52
SKG1	YKR100C	RPP1B	P10622	106 aa	Known RBP	11.8	□□□□□ -0.52
SKG1	YKR100C	BNI4	P53858	892 aa		11.79	□□□□□ -0.52
SKG1	YKR100C	SPB4	P25808	606 aa	Predicted RBP	11.78	□□□□□ -0.52
SKG1	YKR100C	DSF2	P38213	736 aa		11.78	□□□□□ -0.52
SKG1	YKR100C	ORC6	P38826	435 aa		11.77	□□□□□ -0.53
SKG1	YKR100C	TCB3	Q03640	1545 aa	Known RBP	11.76	□□□□□ -0.53
SKG1	YKR100C	BCK2	P33306	851 aa		11.76	□□□□□ -0.53
SKG1	YKR100C	GAP1	P19145	602 aa	Predicted RBP	11.74	□□□□□ -0.53
SKG1	YKR100C	MAM3	Q12296	706 aa		11.74	□□□□□ -0.53
SKG1	YKR100C	PTC2	P39966	464 aa	Known RBP	11.73	□□□□□ -0.53
SKG1	YKR100C	VRP1	P37370	817 aa		11.71	□□□□□ -0.53
SKG1	YKR100C	CSC1	Q06538	782 aa		11.71	□□□□□ -0.53
SKG1	YKR100C	IES2	P40154	320 aa		11.69	□□□□□ -0.54
SKG1	YKR100C	PEX21	P50091	288 aa		11.68	□□□□□ -0.54
SKG1	YKR100C	YML082W	Q04533	649 aa	Known RBP	11.68	□□□□□ -0.54
SKG1	YKR100C	PDR1	P12383	1068 aa		11.66	□□□□□ -0.54
SKG1	YKR100C	TFB4	Q12004	338 aa		11.66	□□□□□ -0.54
SKG1	YKR100C	YRR1	Q12172	810 aa		11.65	□□□□□ -0.54
SKG1	YKR100C	RAM1	P22007	431 aa		11.64	□□□□□ -0.55
SKG1	YKR100C	MVP1	P40959	511 aa	Known RBP	11.64	□□□□□ -0.55
SKG1	YKR100C	TUM1	Q08686	304 aa	Known RBP	11.63	□□□□□ -0.55
SKG1	YKR100C	YPR015C	Q12531	247 aa		11.63	□□□□□ -0.55
SKG1	YKR100C	RGR1	P19263	1082 aa		11.62	□□□□□ -0.55
SKG1	YKR100C	NUP42	P49686	430 aa	Known RBP	11.62	□□□□□ -0.55
SKG1	YKR100C	PSE1	P32337	1089 aa	Known RBP	11.58	□□□□□ -0.56
SKG1	YKR100C	ECM5	Q03214	1411 aa		11.57	□□□□□ -0.56
SKG1	YKR100C	DIT2	P21595	489 aa		11.56	□□□□□ -0.56
SKG1	YKR100C	XDJ1	P39102	459 aa		11.56	□□□□□ -0.56
SKG1	YKR100C	YPR109W	Q06104	294 aa		11.56	□□□□□ -0.56
SKG1	YKR100C	REV3	P14284	1504 aa		11.54	□□□□□ -0.56
SKG1	YKR100C	NUD1	P32336	851 aa		11.49	□□□□□ -0.57
SKG1	YKR100C	STR2	P47164	639 aa		11.47	□□□□□ -0.57
SKG1	YKR100C	ISM1	P48526	1002 aa		11.46	□□□□□ -0.57
SKG1	YKR100C	BUD20	Q08004	166 aa	Predicted RBP	11.45	□□□□□ -0.58
SKG1	YKR100C	CLB5	P30283	435 aa		11.41	□□□□□ -0.58
SKG1	YKR100C	NPL4	P33755	580 aa		11.41	□□□□□ -0.58
SKG1	YKR100C	GYP1	Q08484	637 aa		11.41	□□□□□ -0.58
SKG1	YKR100C	TEA1	P47988	759 aa		11.38	□□□□□ -0.59
SKG1	YKR100C	PRT1	P06103	763 aa	Known RBP	11.37	□□□□□ -0.59

Retrieved 100 of 5,963 RNA–protein pairs in 36.9 ms