RNA–Protein interactions for RNA: YKR100C

SKG1, Transcript of Transmembrane protein with a role in cell wall polymer composition, yeastyeast

Gene SKG1, Length 1,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SKG1YKR100C MTC1P47018 478 aaKnown RBP21.16■□□□□ 0.98
SKG1YKR100C DRS1P32892 752 aaKnown RBP20.39■□□□□ 0.85
SKG1YKR100C FAP1P53971 965 aa18.37■□□□□ 0.53
SKG1YKR100C DIP2Q12220 943 aaPredicted RBP17.65■□□□□ 0.42
SKG1YKR100C PRI1P10363 409 aa17.49■□□□□ 0.39
SKG1YKR100C ISW2Q08773 1120 aa17.39■□□□□ 0.37
SKG1YKR100C AAD16Q02895 342 aa17.3■□□□□ 0.36
SKG1YKR100C BFR2Q06631 534 aaKnown RBP17.23■□□□□ 0.35
SKG1YKR100C PRY3P47033 881 aa17.22■□□□□ 0.35
SKG1YKR100C RPG1P38249 964 aaKnown RBP17.21■□□□□ 0.35
SKG1YKR100C AVT3P36062 692 aa17.18■□□□□ 0.34
SKG1YKR100C RSE1Q04693 1361 aaKnown RBP16.88■□□□□ 0.29
SKG1YKR100C TSR3Q12094 313 aaKnown RBP16.59■□□□□ 0.25
SKG1YKR100C RPL17AP05740 184 aaKnown RBP16.32■□□□□ 0.2
SKG1YKR100C RPL17BP46990 184 aaKnown RBP16.32■□□□□ 0.2
SKG1YKR100C YCK3P39962 524 aa16.31■□□□□ 0.2
SKG1YKR100C REB1P21538 810 aa16.18■□□□□ 0.18
SKG1YKR100C HAA1Q12753 694 aaKnown RBP16.17■□□□□ 0.18
SKG1YKR100C MRPL32P25348 183 aa15.91■□□□□ 0.14
SKG1YKR100C SPT21P35209 758 aa15.66■□□□□ 0.1
SKG1YKR100C TFA1P36100 482 aa15.61■□□□□ 0.09
SKG1YKR100C YKR023WP36119 530 aaKnown RBP15.36■□□□□ 0.05
SKG1YKR100C RIM101P33400 625 aa15.26■□□□□ 0.03
SKG1YKR100C CDC27P38042 758 aa15.25■□□□□ 0.03
SKG1YKR100C YGL015CP33199 130 aa15.07■□□□□ 0
SKG1YKR100C HOP09932 586 aa15.06■□□□□ 0
SKG1YKR100C TFC8Q12308 588 aa15.03■□□□□ -0
SKG1YKR100C DCD1P06773 312 aa14.98□□□□□ -0.01
SKG1YKR100C OXP1P28273 1286 aa14.77□□□□□ -0.05
SKG1YKR100C MAP2P38174 421 aaKnown RBP14.7□□□□□ -0.06
SKG1YKR100C UBP10P53874 792 aaPredicted RBP14.7□□□□□ -0.06
SKG1YKR100C BCH2P36122 765 aa14.58□□□□□ -0.08
SKG1YKR100C YIL055CP40523 627 aaKnown RBP14.54□□□□□ -0.08
SKG1YKR100C SCY1P53009 804 aa14.52□□□□□ -0.09
SKG1YKR100C PTP3P40048 928 aa14.5□□□□□ -0.09
SKG1YKR100C YAH1Q12184 172 aaKnown RBP14.43□□□□□ -0.1
SKG1YKR100C RSM7P47150 247 aa14.32□□□□□ -0.12
SKG1YKR100C SLX5P32828 619 aaKnown RBP14.28□□□□□ -0.12
SKG1YKR100C EPS1P40557 701 aa14.25□□□□□ -0.13
SKG1YKR100C YLR271WQ06152 274 aa14.2□□□□□ -0.14
SKG1YKR100C BDF1P35817 686 aa14.18□□□□□ -0.14
SKG1YKR100C SSP1P38871 571 aa14.18□□□□□ -0.14
SKG1YKR100C AI2P03876 854 aa14.14□□□□□ -0.15
SKG1YKR100C BBC1P47068 1157 aa14.1□□□□□ -0.15
SKG1YKR100C TIF4632P39936 914 aaKnown RBP14.09□□□□□ -0.15
SKG1YKR100C TGL3P40308 642 aa14.02□□□□□ -0.17
SKG1YKR100C ARP8Q12386 881 aaKnown RBP RIP-Chip data14.01□□□□□ -0.17not detected
SKG1YKR100C MON2P48563 1636 aaPredicted RBP13.97□□□□□ -0.17
SKG1YKR100C INO80P53115 1489 aa13.93□□□□□ -0.18
SKG1YKR100C PSD2P53037 1138 aaKnown RBP13.92□□□□□ -0.18
SKG1YKR100C MGA2P40578 1113 aa13.76□□□□□ -0.21
SKG1YKR100C CST9Q06032 482 aa13.74□□□□□ -0.21
SKG1YKR100C MRM1P25270 412 aa13.68□□□□□ -0.22
SKG1YKR100C NSR1P27476 414 aaKnown RBP RIP-Chip data13.58□□□□□ -0.24not detected
SKG1YKR100C BUD31P25337 157 aaPredicted RBP13.54□□□□□ -0.24
SKG1YKR100C YOR238WQ08634 303 aa13.52□□□□□ -0.25
SKG1YKR100C YAP5P40574 245 aa13.51□□□□□ -0.25
SKG1YKR100C MST1P07236 462 aa13.5□□□□□ -0.25
SKG1YKR100C RTG3P38165 486 aa13.41□□□□□ -0.26
SKG1YKR100C UBP9P39967 754 aa13.39□□□□□ -0.27
SKG1YKR100C RCR1P38212 213 aa13.36□□□□□ -0.27
SKG1YKR100C VPS29P38759 282 aa13.36□□□□□ -0.27
SKG1YKR100C PIB1Q06651 286 aa13.31□□□□□ -0.28
SKG1YKR100C YMR1P47147 688 aaKnown RBP RIP-Chip data13.28□□□□□ -0.28not detected
SKG1YKR100C DNA2P38859 1522 aa13.25□□□□□ -0.29
SKG1YKR100C DBP1P24784 617 aaKnown RBP13.23□□□□□ -0.29
SKG1YKR100C YBL029C-AQ3E756 94 aa13.22□□□□□ -0.29
SKG1YKR100C YFR006WP43590 535 aa13.21□□□□□ -0.29
SKG1YKR100C STS1P38637 319 aa13.19□□□□□ -0.3
SKG1YKR100C GTT3P39996 337 aa13.19□□□□□ -0.3
SKG1YKR100C WSC3Q12215 556 aa13.13□□□□□ -0.31
SKG1YKR100C RAM2P29703 316 aa13.11□□□□□ -0.31
SKG1YKR100C VNX1P42839 908 aa13.1□□□□□ -0.31
SKG1YKR100C VMA1P17255 1071 aaKnown RBP13.03□□□□□ -0.32
SKG1YKR100C MAK11P20484 414 aaKnown RBP12.98□□□□□ -0.33
SKG1YKR100C SPP1Q03012 353 aa12.98□□□□□ -0.33
SKG1YKR100C SIS1P25294 352 aaKnown RBP12.96□□□□□ -0.33
SKG1YKR100C TIF11P38912 153 aaKnown RBP12.91□□□□□ -0.34
SKG1YKR100C YOL036WQ08206 761 aa12.91□□□□□ -0.34
SKG1YKR100C SAM3Q08986 587 aa12.91□□□□□ -0.34
SKG1YKR100C SET4P42948 560 aa12.9□□□□□ -0.34
SKG1YKR100C KOG1P38873 1557 aa12.9□□□□□ -0.35
SKG1YKR100C MSB4Q12317 492 aa12.88□□□□□ -0.35
SKG1YKR100C MIF2P35201 549 aa12.86□□□□□ -0.35
SKG1YKR100C ULI1P43604 169 aa12.82□□□□□ -0.36
SKG1YKR100C COQ8P27697 501 aa12.81□□□□□ -0.36
SKG1YKR100C EDS1P38073 919 aa12.81□□□□□ -0.36
SKG1YKR100C GYP5Q12344 894 aa12.78□□□□□ -0.36
SKG1YKR100C EAP1P36041 632 aaKnown RBP12.77□□□□□ -0.37
SKG1YKR100C IOC2Q12072 812 aa12.77□□□□□ -0.37
SKG1YKR100C TRP5P00931 707 aaKnown RBP12.73□□□□□ -0.37
SKG1YKR100C SPA2P23201 1466 aaKnown RBP12.72□□□□□ -0.37
SKG1YKR100C PTC3P34221 468 aaKnown RBP12.72□□□□□ -0.37
SKG1YKR100C LDB19Q12502 818 aa12.72□□□□□ -0.37
SKG1YKR100C SWR1Q05471 1514 aa12.68□□□□□ -0.38
SKG1YKR100C DCW1P36091 449 aa12.68□□□□□ -0.38
SKG1YKR100C GRE2Q12068 342 aaKnown RBP12.68□□□□□ -0.38
SKG1YKR100C ABP1P15891 592 aaKnown RBP12.67□□□□□ -0.38
SKG1YKR100C HTA1P04911 132 aaKnown RBP12.62□□□□□ -0.39
SKG1YKR100C HTA2P04912 132 aa12.62□□□□□ -0.39
Retrieved 100 of 5,963 RNA–protein pairs in 222.9 ms