RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C ATF2P53296 535 aa4.03□□□□□ -1.76
VPS35YJL154C SAM3Q08986 587 aa4.03□□□□□ -1.76
VPS35YJL154C WSC3Q12215 556 aa4.03□□□□□ -1.76
VPS35YJL154C COX6P00427 148 aa4.03□□□□□ -1.76
VPS35YJL154C GLC3P32775 704 aa4.03□□□□□ -1.76
VPS35YJL154C HGH1P48362 394 aaKnown RBP4.03□□□□□ -1.76
VPS35YJL154C MST1P07236 462 aa4.02□□□□□ -1.77
VPS35YJL154C RAD54P32863 898 aa4.02□□□□□ -1.77
VPS35YJL154C YOL036WQ08206 761 aa4.02□□□□□ -1.77
VPS35YJL154C HTA1P04911 132 aaKnown RBP4.02□□□□□ -1.77
VPS35YJL154C HTA2P04912 132 aa4.02□□□□□ -1.77
VPS35YJL154C KIN1P13185 1064 aa4.01□□□□□ -1.77
VPS35YJL154C YGR273CP53329 174 aa4□□□□□ -1.77
VPS35YJL154C DMA2P53924 522 aa4□□□□□ -1.77
VPS35YJL154C MSB4Q12317 492 aa4□□□□□ -1.77
VPS35YJL154C DIT2P21595 489 aa3.99□□□□□ -1.77
VPS35YJL154C AIM7Q12156 149 aa3.99□□□□□ -1.77
VPS35YJL154C EAP1P36041 632 aaKnown RBP3.99□□□□□ -1.77
VPS35YJL154C YLR326WQ06170 240 aaKnown RBP3.99□□□□□ -1.77
VPS35YJL154C RPP1BP10622 106 aaKnown RBP3.98□□□□□ -1.77
VPS35YJL154C UBP14P38237 781 aaKnown RBP3.98□□□□□ -1.77
VPS35YJL154C UBP9P39967 754 aa3.98□□□□□ -1.77
VPS35YJL154C KEX1P09620 729 aa3.97□□□□□ -1.77
VPS35YJL154C NUP42P49686 430 aaKnown RBP3.97□□□□□ -1.77
VPS35YJL154C YDR090CQ03193 310 aa3.95□□□□□ -1.78
VPS35YJL154C YEL023CP39992 682 aa3.95□□□□□ -1.78
VPS35YJL154C YBL029C-AQ3E756 94 aa3.94□□□□□ -1.78
VPS35YJL154C PCS60P38137 543 aaKnown RBP RIP-Chip data3.94□□□□□ -1.78not detected
VPS35YJL154C SPP1Q03012 353 aa3.94□□□□□ -1.78
VPS35YJL154C ULI1P43604 169 aa3.94□□□□□ -1.78
VPS35YJL154C AI4P03878 556 aa3.93□□□□□ -1.78
VPS35YJL154C PSE1P32337 1089 aaKnown RBP3.93□□□□□ -1.78
VPS35YJL154C SOL3P38858 249 aa3.93□□□□□ -1.78
VPS35YJL154C MPH3P0CE00 602 aa3.93□□□□□ -1.78
VPS35YJL154C TRP5P00931 707 aaKnown RBP3.92□□□□□ -1.78
VPS35YJL154C TIF11P38912 153 aaKnown RBP3.92□□□□□ -1.78
VPS35YJL154C PEX21P50091 288 aa3.92□□□□□ -1.78
VPS35YJL154C PTC4P38089 393 aa3.91□□□□□ -1.78
VPS35YJL154C VNX1P42839 908 aa3.91□□□□□ -1.78
VPS35YJL154C JIP4Q03361 876 aa3.91□□□□□ -1.78
VPS35YJL154C TFG1P41895 735 aaPredicted RBP3.91□□□□□ -1.78
VPS35YJL154C TEA1P47988 759 aa3.91□□□□□ -1.78
VPS35YJL154C DAN4P47179 1161 aa3.9□□□□□ -1.78
VPS35YJL154C PEX29Q03370 554 aa3.9□□□□□ -1.78
VPS35YJL154C SSA2P10592 639 aaKnown RBP3.9□□□□□ -1.79
VPS35YJL154C CLB5P30283 435 aa3.9□□□□□ -1.79
VPS35YJL154C BRL1P38770 471 aa3.9□□□□□ -1.79
VPS35YJL154C YMR196WQ04336 1088 aa3.9□□□□□ -1.79
VPS35YJL154C GUA1P38625 525 aaKnown RBP3.89□□□□□ -1.79
VPS35YJL154C ORC6P38826 435 aa3.89□□□□□ -1.79
VPS35YJL154C CSC1Q06538 782 aa3.89□□□□□ -1.79
VPS35YJL154C RLF2Q12495 606 aa3.89□□□□□ -1.79
VPS35YJL154C SLI15P38283 698 aa3.88□□□□□ -1.79
VPS35YJL154C CSN12P47130 423 aa3.88□□□□□ -1.79
VPS35YJL154C ILV3P39522 585 aaKnown RBP3.88□□□□□ -1.79
VPS35YJL154C YNL035CP53962 389 aaKnown RBP3.88□□□□□ -1.79
VPS35YJL154C NST1P53935 1240 aa3.87□□□□□ -1.79
VPS35YJL154C HPC2Q01448 625 aa3.87□□□□□ -1.79
VPS35YJL154C PML39Q03760 334 aa3.86□□□□□ -1.79
VPS35YJL154C RGR1P19263 1082 aa3.86□□□□□ -1.79
VPS35YJL154C TFB4Q12004 338 aa3.86□□□□□ -1.79
VPS35YJL154C RTG1P32607 177 aa3.85□□□□□ -1.79
VPS35YJL154C YPR109WQ06104 294 aa3.85□□□□□ -1.79
VPS35YJL154C LDB19Q12502 818 aa3.85□□□□□ -1.79
VPS35YJL154C MVP1P40959 511 aaKnown RBP3.85□□□□□ -1.79
VPS35YJL154C TFB3Q03290 321 aa3.85□□□□□ -1.79
VPS35YJL154C CDC73Q06697 393 aa3.85□□□□□ -1.79
VPS35YJL154C DPL1Q05567 589 aa3.84□□□□□ -1.79
VPS35YJL154C TUM1Q08686 304 aaKnown RBP3.84□□□□□ -1.8
VPS35YJL154C IOC2Q12072 812 aa3.83□□□□□ -1.8
VPS35YJL154C GLN1P32288 370 aaKnown RBP3.83□□□□□ -1.8
VPS35YJL154C SEC61P32915 480 aa3.83□□□□□ -1.8
VPS35YJL154C RPL34BP40525 121 aaKnown RBP3.83□□□□□ -1.8
VPS35YJL154C MID1P41821 548 aa3.83□□□□□ -1.8
VPS35YJL154C TYW1Q08960 810 aaKnown RBP3.82□□□□□ -1.8
VPS35YJL154C YRR1Q12172 810 aa3.82□□□□□ -1.8
VPS35YJL154C NCR1Q12200 1170 aa3.82□□□□□ -1.8
VPS35YJL154C MPC54Q08550 464 aa3.81□□□□□ -1.8
VPS35YJL154C MMP1Q12372 583 aa3.81□□□□□ -1.8
VPS35YJL154C NPL4P33755 580 aa3.81□□□□□ -1.8
VPS35YJL154C PKH3Q03306 898 aaPredicted RBP3.81□□□□□ -1.8
VPS35YJL154C ISU2Q12056 156 aa3.81□□□□□ -1.8
VPS35YJL154C YBL036CP38197 257 aa3.8□□□□□ -1.8
VPS35YJL154C FPK1P53739 893 aa3.8□□□□□ -1.8
VPS35YJL154C NIS1P53939 407 aa3.8□□□□□ -1.8
VPS35YJL154C YDL129WQ07555 291 aa3.8□□□□□ -1.8
VPS35YJL154C YJL007CP47080 104 aa3.8□□□□□ -1.8
VPS35YJL154C GAP1P19145 602 aaPredicted RBP3.79□□□□□ -1.8
VPS35YJL154C HST2P53686 357 aa3.79□□□□□ -1.8
VPS35YJL154C NMA111P53920 997 aa3.79□□□□□ -1.8
VPS35YJL154C ESS1P22696 170 aa3.79□□□□□ -1.8
VPS35YJL154C ARG8P18544 423 aa3.78□□□□□ -1.8
VPS35YJL154C PKC1P24583 1151 aa3.78□□□□□ -1.8
VPS35YJL154C SAP30P38429 201 aa3.78□□□□□ -1.8
VPS35YJL154C SLY41P22215 453 aa3.78□□□□□ -1.8
VPS35YJL154C ELP4Q02884 456 aaKnown RBP3.77□□□□□ -1.81
VPS35YJL154C TBF1Q02457 562 aa3.77□□□□□ -1.81
VPS35YJL154C SCJ1P25303 377 aa3.76□□□□□ -1.81
VPS35YJL154C KTR1P27810 393 aaKnown RBP3.76□□□□□ -1.81
VPS35YJL154C HAP5Q02516 242 aa3.76□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms