RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS35	YJL154C	DRS1	P32892	752 aa	Known RBP	6.76	□□□□□ -1.33
VPS35	YJL154C	MTC1	P47018	478 aa	Known RBP	6.55	□□□□□ -1.36
VPS35	YJL154C	BFR2	Q06631	534 aa	Known RBP	5.92	□□□□□ -1.46
VPS35	YJL154C	DIP2	Q12220	943 aa	Predicted RBP	5.68	□□□□□ -1.5
VPS35	YJL154C	AVT3	P36062	692 aa		5.56	□□□□□ -1.52
VPS35	YJL154C	TFA1	P36100	482 aa		5.56	□□□□□ -1.52
VPS35	YJL154C	ISW2	Q08773	1120 aa		5.37	□□□□□ -1.55
VPS35	YJL154C	RSE1	Q04693	1361 aa	Known RBP	5.36	□□□□□ -1.55
VPS35	YJL154C	FAP1	P53971	965 aa		5.36	□□□□□ -1.55
VPS35	YJL154C	RPG1	P38249	964 aa	Known RBP	5.26	□□□□□ -1.57
VPS35	YJL154C	PRI1	P10363	409 aa		5.17	□□□□□ -1.58
VPS35	YJL154C	RPL17A	P05740	184 aa	Known RBP	5.16	□□□□□ -1.58
VPS35	YJL154C	RPL17B	P46990	184 aa	Known RBP	5.16	□□□□□ -1.58
VPS35	YJL154C	REB1	P21538	810 aa		5.13	□□□□□ -1.59
VPS35	YJL154C	AAD16	Q02895	342 aa		5.12	□□□□□ -1.59
VPS35	YJL154C	RQC2	Q12532	1038 aa	Known RBP	5.01	□□□□□ -1.61
VPS35	YJL154C	PRY3	P47033	881 aa		4.98	□□□□□ -1.61
VPS35	YJL154C	TSR3	Q12094	313 aa	Known RBP	4.97	□□□□□ -1.61
VPS35	YJL154C	SPT21	P35209	758 aa		4.87	□□□□□ -1.63
VPS35	YJL154C	PTP3	P40048	928 aa		4.86	□□□□□ -1.63
VPS35	YJL154C	RIM101	P33400	625 aa		4.84	□□□□□ -1.63
VPS35	YJL154C	MRPL32	P25348	183 aa		4.82	□□□□□ -1.64
VPS35	YJL154C	YIL055C	P40523	627 aa	Known RBP	4.76	□□□□□ -1.65
VPS35	YJL154C	YAH1	Q12184	172 aa	Known RBP	4.75	□□□□□ -1.65
VPS35	YJL154C	SSP1	P38871	571 aa		4.74	□□□□□ -1.65
VPS35	YJL154C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
VPS35	YJL154C	OXP1	P28273	1286 aa		4.69	□□□□□ -1.66
VPS35	YJL154C	YKR023W	P36119	530 aa	Known RBP	4.69	□□□□□ -1.66
VPS35	YJL154C	HAA1	Q12753	694 aa	Known RBP	4.68	□□□□□ -1.66
VPS35	YJL154C	HO	P09932	586 aa		4.66	□□□□□ -1.66
VPS35	YJL154C	DMA1	P38823	416 aa		4.66	□□□□□ -1.66
VPS35	YJL154C	TFC8	Q12308	588 aa		4.63	□□□□□ -1.67
VPS35	YJL154C	RSM7	P47150	247 aa		4.62	□□□□□ -1.67
VPS35	YJL154C	DCD1	P06773	312 aa		4.6	□□□□□ -1.67
VPS35	YJL154C	YLR271W	Q06152	274 aa		4.59	□□□□□ -1.67
VPS35	YJL154C	CDC27	P38042	758 aa		4.58	□□□□□ -1.68
VPS35	YJL154C	MGA2	P40578	1113 aa		4.55	□□□□□ -1.68
VPS35	YJL154C	BBC1	P47068	1157 aa		4.54	□□□□□ -1.68
VPS35	YJL154C	AI2	P03876	854 aa		4.52	□□□□□ -1.69
VPS35	YJL154C	YCK3	P39962	524 aa		4.52	□□□□□ -1.69
VPS35	YJL154C	BCH2	P36122	765 aa		4.5	□□□□□ -1.69
VPS35	YJL154C	CST9	Q06032	482 aa		4.47	□□□□□ -1.69
VPS35	YJL154C	SCY1	P53009	804 aa		4.45	□□□□□ -1.7
VPS35	YJL154C	EPS1	P40557	701 aa		4.45	□□□□□ -1.7
VPS35	YJL154C	PSD2	P53037	1138 aa	Known RBP	4.45	□□□□□ -1.7
VPS35	YJL154C	YGL015C	P33199	130 aa		4.43	□□□□□ -1.7
VPS35	YJL154C	UBP10	P53874	792 aa	Predicted RBP	4.42	□□□□□ -1.7
VPS35	YJL154C	MRM1	P25270	412 aa		4.4	□□□□□ -1.7
VPS35	YJL154C	MAP2	P38174	421 aa	Known RBP	4.4	□□□□□ -1.7
VPS35	YJL154C	BDF1	P35817	686 aa		4.4	□□□□□ -1.71
VPS35	YJL154C	SLX5	P32828	619 aa	Known RBP	4.38	□□□□□ -1.71
VPS35	YJL154C	RTG3	P38165	486 aa		4.35	□□□□□ -1.71
VPS35	YJL154C	RAM2	P29703	316 aa		4.31	□□□□□ -1.72
VPS35	YJL154C	TIF4632	P39936	914 aa	Known RBP	4.31	□□□□□ -1.72
VPS35	YJL154C	SET1	P38827	1080 aa	Known RBP	4.3	□□□□□ -1.72
VPS35	YJL154C	RCR1	P38212	213 aa		4.29	□□□□□ -1.72
VPS35	YJL154C	SAS10	Q12136	610 aa	Predicted RBP	4.29	□□□□□ -1.72
VPS35	YJL154C	IFH1	P39520	1085 aa		4.27	□□□□□ -1.73
VPS35	YJL154C	MAK11	P20484	414 aa	Known RBP	4.27	□□□□□ -1.73
VPS35	YJL154C	LEO1	P38439	464 aa		4.26	□□□□□ -1.73
VPS35	YJL154C	SPB4	P25808	606 aa	Predicted RBP	4.25	□□□□□ -1.73
VPS35	YJL154C	VPS70	P47161	811 aa		4.25	□□□□□ -1.73
VPS35	YJL154C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
VPS35	YJL154C	LEU3	P08638	886 aa		4.24	□□□□□ -1.73
VPS35	YJL154C	MIF2	P35201	549 aa		4.24	□□□□□ -1.73
VPS35	YJL154C	CKB1	P43639	278 aa		4.24	□□□□□ -1.73
VPS35	YJL154C	VPS29	P38759	282 aa		4.22	□□□□□ -1.73
VPS35	YJL154C	YOR238W	Q08634	303 aa		4.22	□□□□□ -1.73
VPS35	YJL154C	DBP1	P24784	617 aa	Known RBP	4.22	□□□□□ -1.73
VPS35	YJL154C	COQ8	P27697	501 aa		4.22	□□□□□ -1.73
VPS35	YJL154C	YFR006W	P43590	535 aa		4.22	□□□□□ -1.73
VPS35	YJL154C	YAP5	P40574	245 aa		4.2	□□□□□ -1.74
VPS35	YJL154C	TGL3	P40308	642 aa		4.19	□□□□□ -1.74
VPS35	YJL154C	PIB1	Q06651	286 aa		4.19	□□□□□ -1.74
VPS35	YJL154C	STS1	P38637	319 aa		4.18	□□□□□ -1.74
VPS35	YJL154C	YPR148C	Q06523	435 aa		4.18	□□□□□ -1.74
VPS35	YJL154C	TAF7	Q05021	590 aa		4.17	□□□□□ -1.74
VPS35	YJL154C	GTT3	P39996	337 aa		4.17	□□□□□ -1.74
VPS35	YJL154C	NOP53	Q12080	455 aa	Known RBP	4.16	□□□□□ -1.74
VPS35	YJL154C	RPN1	P38764	993 aa	Known RBP	4.15	□□□□□ -1.74
VPS35	YJL154C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
VPS35	YJL154C	PBS2	P08018	668 aa		4.13	□□□□□ -1.75
VPS35	YJL154C	ATH1	P48016	1211 aa		4.13	□□□□□ -1.75
VPS35	YJL154C	PTC3	P34221	468 aa	Known RBP	4.13	□□□□□ -1.75
VPS35	YJL154C	EDS1	P38073	919 aa		4.13	□□□□□ -1.75
VPS35	YJL154C	REF2	P42073	533 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS35	YJL154C	VMA1	P17255	1071 aa	Known RBP	4.11	□□□□□ -1.75
VPS35	YJL154C	GRE2	Q12068	342 aa	Known RBP	4.11	□□□□□ -1.75
VPS35	YJL154C	MAM3	Q12296	706 aa		4.1	□□□□□ -1.75
VPS35	YJL154C	DSF2	P38213	736 aa		4.09	□□□□□ -1.75
VPS35	YJL154C	KIC1	P38692	1080 aa		4.08	□□□□□ -1.76
VPS35	YJL154C	MAK21	Q12176	1025 aa	Known RBP	4.08	□□□□□ -1.76
VPS35	YJL154C	GYP5	Q12344	894 aa		4.08	□□□□□ -1.76
VPS35	YJL154C	GUT1	P32190	709 aa		4.07	□□□□□ -1.76
VPS35	YJL154C	IES2	P40154	320 aa		4.07	□□□□□ -1.76
VPS35	YJL154C	VHR2	P40041	505 aa		4.06	□□□□□ -1.76
VPS35	YJL154C	YNR021W	P53723	404 aa	Known RBP	4.04	□□□□□ -1.76
VPS35	YJL154C	ABP1	P15891	592 aa	Known RBP	4.04	□□□□□ -1.76
VPS35	YJL154C	DCW1	P36091	449 aa		4.04	□□□□□ -1.76
VPS35	YJL154C	SET4	P42948	560 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 43.7 ms