RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W ECM5Q03214 1411 aa10.46□□□□□ -0.74
UFD1YGR048W TRM732Q03496 1420 aa10.46□□□□□ -0.74
UFD1YGR048W IKI3Q06706 1349 aaKnown RBP10.45□□□□□ -0.74
UFD1YGR048W MNN4P36044 1178 aa10.45□□□□□ -0.74
UFD1YGR048W SPT7P35177 1332 aa10.44□□□□□ -0.74
UFD1YGR048W PRS1P32895 427 aaKnown RBP10.44□□□□□ -0.74
UFD1YGR048W YOL036WQ08206 761 aa10.44□□□□□ -0.74
UFD1YGR048W CLC1P17891 233 aa10.42□□□□□ -0.74
UFD1YGR048W ULI1P43604 169 aa10.4□□□□□ -0.74
UFD1YGR048W IME2P32581 645 aa10.37□□□□□ -0.75
UFD1YGR048W MAK11P20484 414 aaKnown RBP10.36□□□□□ -0.75
UFD1YGR048W MSB4Q12317 492 aa10.36□□□□□ -0.75
UFD1YGR048W MIF2P35201 549 aa10.35□□□□□ -0.75
UFD1YGR048W LDB19Q12502 818 aa10.35□□□□□ -0.75
UFD1YGR048W SAM3Q08986 587 aa10.34□□□□□ -0.75
UFD1YGR048W YFR016CP43597 1233 aaKnown RBP10.31□□□□□ -0.76
UFD1YGR048W IOC2Q12072 812 aa10.31□□□□□ -0.76
UFD1YGR048W TRP5P00931 707 aaKnown RBP10.3□□□□□ -0.76
UFD1YGR048W EAP1P36041 632 aaKnown RBP10.3□□□□□ -0.76
UFD1YGR048W GYP5Q12344 894 aa10.29□□□□□ -0.76
UFD1YGR048W QCR6P00127 147 aa10.27□□□□□ -0.77
UFD1YGR048W NUP170P38181 1502 aa10.27□□□□□ -0.77
UFD1YGR048W EDS1P38073 919 aa10.26□□□□□ -0.77
UFD1YGR048W PEP1P32319 1579 aa10.26□□□□□ -0.77
UFD1YGR048W COQ8P27697 501 aa10.25□□□□□ -0.77
UFD1YGR048W DCW1P36091 449 aa10.25□□□□□ -0.77
UFD1YGR048W FKH1P40466 484 aa10.25□□□□□ -0.77
UFD1YGR048W RPS0BP46654 252 aaKnown RBP10.25□□□□□ -0.77
UFD1YGR048W MYO2P19524 1574 aaKnown RBP10.24□□□□□ -0.77
UFD1YGR048W LEO1P38439 464 aa10.24□□□□□ -0.77
UFD1YGR048W AIR2Q12476 344 aaKnown RBP10.24□□□□□ -0.77
UFD1YGR048W SSM4P40318 1319 aa10.23□□□□□ -0.77
UFD1YGR048W STU1P38198 1513 aa10.22□□□□□ -0.77
UFD1YGR048W OPY1P38271 328 aa10.21□□□□□ -0.77
UFD1YGR048W EAF7P53911 425 aaKnown RBP10.21□□□□□ -0.77
UFD1YGR048W RTG1P32607 177 aa10.2□□□□□ -0.78
UFD1YGR048W PTC3P34221 468 aaKnown RBP10.2□□□□□ -0.78
UFD1YGR048W BUD4P47136 1447 aa10.19□□□□□ -0.78
UFD1YGR048W GRE2Q12068 342 aaKnown RBP10.19□□□□□ -0.78
UFD1YGR048W SAS10Q12136 610 aaPredicted RBP10.19□□□□□ -0.78
UFD1YGR048W SRB8P25648 1427 aa10.18□□□□□ -0.78
UFD1YGR048W YTA7P40340 1379 aa10.18□□□□□ -0.78
UFD1YGR048W RLF2Q12495 606 aa10.18□□□□□ -0.78
UFD1YGR048W HTA1P04911 132 aaKnown RBP10.17□□□□□ -0.78
UFD1YGR048W HTA2P04912 132 aa10.17□□□□□ -0.78
UFD1YGR048W AIM44Q99299 758 aa10.17□□□□□ -0.78
UFD1YGR048W PDR10P51533 1564 aa10.17□□□□□ -0.78
UFD1YGR048W THO2P53552 1597 aaKnown RBP10.15□□□□□ -0.78
UFD1YGR048W ABP1P15891 592 aaKnown RBP10.15□□□□□ -0.78
UFD1YGR048W YJL171CP46992 396 aa10.15□□□□□ -0.78
UFD1YGR048W ATH1P48016 1211 aa10.15□□□□□ -0.78
UFD1YGR048W CFT1Q06632 1357 aaKnown RBP10.14□□□□□ -0.79
UFD1YGR048W YNL035CP53962 389 aaKnown RBP10.13□□□□□ -0.79
UFD1YGR048W YLR419WQ06698 1435 aaKnown RBP10.13□□□□□ -0.79
UFD1YGR048W RPC31P17890 251 aa10.12□□□□□ -0.79
UFD1YGR048W RTT106P40161 455 aa10.12□□□□□ -0.79
UFD1YGR048W HSL1P34244 1518 aa10.12□□□□□ -0.79
UFD1YGR048W MLP2P40457 1679 aa10.12□□□□□ -0.79
UFD1YGR048W TOP2P06786 1428 aaKnown RBP10.11□□□□□ -0.79
UFD1YGR048W FPR3P38911 411 aaKnown RBP10.11□□□□□ -0.79
UFD1YGR048W YEL023CP39992 682 aa10.11□□□□□ -0.79
UFD1YGR048W SNF7P39929 240 aaKnown RBP10.1□□□□□ -0.79
UFD1YGR048W TY1B-DR4Q07793 1604 aa10.09□□□□□ -0.79
UFD1YGR048W YGR130CP53278 816 aa10.09□□□□□ -0.79
UFD1YGR048W NOP53Q12080 455 aaKnown RBP10.09□□□□□ -0.79
UFD1YGR048W NCR1Q12200 1170 aa10.09□□□□□ -0.79
UFD1YGR048W GUT1P32190 709 aa10.08□□□□□ -0.8
UFD1YGR048W SIN3P22579 1536 aa10.07□□□□□ -0.8
UFD1YGR048W SPT6P23615 1451 aaKnown RBP10.07□□□□□ -0.8
UFD1YGR048W CWC22P53333 577 aaKnown RBP10.07□□□□□ -0.8
UFD1YGR048W POL1P13382 1468 aa10.06□□□□□ -0.8
UFD1YGR048W SEC61P32915 480 aa10.06□□□□□ -0.8
UFD1YGR048W SCC2Q04002 1493 aa10.05□□□□□ -0.8
UFD1YGR048W SET1P38827 1080 aaKnown RBP10.05□□□□□ -0.8
UFD1YGR048W DAN4P47179 1161 aa10.05□□□□□ -0.8
UFD1YGR048W JIP4Q03361 876 aa10.05□□□□□ -0.8
UFD1YGR048W SSK2P53599 1579 aa10.05□□□□□ -0.8
UFD1YGR048W REV3P14284 1504 aa10.04□□□□□ -0.8
UFD1YGR048W BMT6Q12291 365 aa10.04□□□□□ -0.8
UFD1YGR048W PTC4P38089 393 aa10.03□□□□□ -0.8
UFD1YGR048W HIR3P47171 1648 aa10.01□□□□□ -0.81
UFD1YGR048W TFG1P41895 735 aaPredicted RBP10.01□□□□□ -0.81
UFD1YGR048W PAN1P32521 1480 aa10.01□□□□□ -0.81
UFD1YGR048W BPT1P14772 1559 aa10.01□□□□□ -0.81
UFD1YGR048W SMC4Q12267 1418 aa10□□□□□ -0.81
UFD1YGR048W LEU3P08638 886 aa10□□□□□ -0.81
UFD1YGR048W PAF1P38351 445 aa10□□□□□ -0.81
UFD1YGR048W NUG1P40010 520 aaKnown RBP10□□□□□ -0.81
UFD1YGR048W TAF2P23255 1407 aa9.99□□□□□ -0.81
UFD1YGR048W IRC20Q06554 1556 aa9.98□□□□□ -0.81
UFD1YGR048W ROX1P25042 368 aa9.98□□□□□ -0.81
UFD1YGR048W SOL3P38858 249 aa9.97□□□□□ -0.81
UFD1YGR048W YIR014WP40570 242 aa9.97□□□□□ -0.81
UFD1YGR048W SAP30P38429 201 aa9.96□□□□□ -0.82
UFD1YGR048W RIX1P38883 763 aaPredicted RBP9.96□□□□□ -0.82
UFD1YGR048W MMS1Q06211 1407 aa9.96□□□□□ -0.82
UFD1YGR048W MYO4P32492 1471 aa9.94□□□□□ -0.82
UFD1YGR048W YPK9Q12697 1472 aa9.93□□□□□ -0.82
UFD1YGR048W ENV11P53246 860 aa9.93□□□□□ -0.82
UFD1YGR048W NST1P53935 1240 aa9.93□□□□□ -0.82
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms