RNA–Protein interactions for RNA: YDR311W

TFB1, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB1, Length 1,929 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB1	YDR311W	RTG1	P32607	177 aa		4.93	□□□□□ -1.62
TFB1	YDR311W	PTC3	P34221	468 aa	Known RBP	4.93	□□□□□ -1.62
TFB1	YDR311W	DCW1	P36091	449 aa		4.92	□□□□□ -1.62
TFB1	YDR311W	YNL035C	P53962	389 aa	Known RBP	4.92	□□□□□ -1.62
TFB1	YDR311W	DAN4	P47179	1161 aa		4.91	□□□□□ -1.62
TFB1	YDR311W	GRE2	Q12068	342 aa	Known RBP	4.91	□□□□□ -1.62
TFB1	YDR311W	HTA1	P04911	132 aa	Known RBP	4.9	□□□□□ -1.62
TFB1	YDR311W	HTA2	P04912	132 aa		4.9	□□□□□ -1.62
TFB1	YDR311W	SEC61	P32915	480 aa		4.89	□□□□□ -1.63
TFB1	YDR311W	JIP4	Q03361	876 aa		4.89	□□□□□ -1.63
TFB1	YDR311W	NCR1	Q12200	1170 aa		4.89	□□□□□ -1.63
TFB1	YDR311W	RPN1	P38764	993 aa	Known RBP	4.89	□□□□□ -1.63
TFB1	YDR311W	NOP53	Q12080	455 aa	Known RBP	4.89	□□□□□ -1.63
TFB1	YDR311W	GUT1	P32190	709 aa		4.88	□□□□□ -1.63
TFB1	YDR311W	PTC4	P38089	393 aa		4.87	□□□□□ -1.63
TFB1	YDR311W	YEL023C	P39992	682 aa		4.87	□□□□□ -1.63
TFB1	YDR311W	ATH1	P48016	1211 aa		4.87	□□□□□ -1.63
TFB1	YDR311W	SOL3	P38858	249 aa		4.86	□□□□□ -1.63
TFB1	YDR311W	NST1	P53935	1240 aa		4.86	□□□□□ -1.63
TFB1	YDR311W	BMT6	Q12291	365 aa		4.86	□□□□□ -1.63
TFB1	YDR311W	SPB4	P25808	606 aa	Predicted RBP	4.83	□□□□□ -1.64
TFB1	YDR311W	SET1	P38827	1080 aa	Known RBP	4.82	□□□□□ -1.64
TFB1	YDR311W	TFG1	P41895	735 aa	Predicted RBP	4.81	□□□□□ -1.64
TFB1	YDR311W	YDL129W	Q07555	291 aa		4.81	□□□□□ -1.64
TFB1	YDR311W	VPS70	P47161	811 aa		4.8	□□□□□ -1.64
TFB1	YDR311W	MPH3	P0CE00	602 aa		4.79	□□□□□ -1.64
TFB1	YDR311W	SAP30	P38429	201 aa		4.79	□□□□□ -1.64
TFB1	YDR311W	YGR273C	P53329	174 aa		4.79	□□□□□ -1.64
TFB1	YDR311W	AI4	P03878	556 aa		4.78	□□□□□ -1.64
TFB1	YDR311W	ILV3	P39522	585 aa	Known RBP	4.78	□□□□□ -1.64
TFB1	YDR311W	PML39	Q03760	334 aa		4.78	□□□□□ -1.64
TFB1	YDR311W	YPR148C	Q06523	435 aa		4.78	□□□□□ -1.64
TFB1	YDR311W	CKB1	P43639	278 aa		4.77	□□□□□ -1.65
TFB1	YDR311W	RLF2	Q12495	606 aa		4.76	□□□□□ -1.65
TFB1	YDR311W	MID1	P41821	548 aa		4.74	□□□□□ -1.65
TFB1	YDR311W	YDR344C	Q05510	147 aa		4.74	□□□□□ -1.65
TFB1	YDR311W	CHL1	P22516	861 aa	Predicted RBP	4.72	□□□□□ -1.65
TFB1	YDR311W	UBP14	P38237	781 aa	Known RBP	4.72	□□□□□ -1.65
TFB1	YDR311W	PRE3	P38624	215 aa		4.72	□□□□□ -1.65
TFB1	YDR311W	DSF2	P38213	736 aa		4.71	□□□□□ -1.66
TFB1	YDR311W	KEX1	P09620	729 aa		4.7	□□□□□ -1.66
TFB1	YDR311W	IFH1	P39520	1085 aa		4.7	□□□□□ -1.66
TFB1	YDR311W	SLI15	P38283	698 aa		4.7	□□□□□ -1.66
TFB1	YDR311W	YLR326W	Q06170	240 aa	Known RBP	4.7	□□□□□ -1.66
TFB1	YDR311W	PBS2	P08018	668 aa		4.69	□□□□□ -1.66
TFB1	YDR311W	ARH1	P48360	493 aa		4.69	□□□□□ -1.66
TFB1	YDR311W	KIN1	P13185	1064 aa		4.68	□□□□□ -1.66
TFB1	YDR311W	VHR2	P40041	505 aa		4.68	□□□□□ -1.66
TFB1	YDR311W	PEX29	Q03370	554 aa		4.67	□□□□□ -1.66
TFB1	YDR311W	ELP4	Q02884	456 aa	Known RBP	4.66	□□□□□ -1.66
TFB1	YDR311W	MPC54	Q08550	464 aa		4.66	□□□□□ -1.66
TFB1	YDR311W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	RIP-Chip
TFB1	YDR311W	YDR090C	Q03193	310 aa		4.66	□□□□□ -1.66
TFB1	YDR311W	GLC3	P32775	704 aa		4.65	□□□□□ -1.67
TFB1	YDR311W	YNR021W	P53723	404 aa	Known RBP	4.65	□□□□□ -1.67
TFB1	YDR311W	REF2	P42073	533 aa	Predicted RBP	4.64	□□□□□ -1.67
TFB1	YDR311W	HAP5	Q02516	242 aa		4.64	□□□□□ -1.67
TFB1	YDR311W	BCK2	P33306	851 aa		4.63	□□□□□ -1.67
TFB1	YDR311W	NMA111	P53920	997 aa		4.63	□□□□□ -1.67
TFB1	YDR311W	DPL1	Q05567	589 aa		4.63	□□□□□ -1.67
TFB1	YDR311W	DIT2	P21595	489 aa		4.62	□□□□□ -1.67
TFB1	YDR311W	RAD54	P32863	898 aa		4.62	□□□□□ -1.67
TFB1	YDR311W	SPT23	P35210	1082 aa		4.62	□□□□□ -1.67
TFB1	YDR311W	CDC73	Q06697	393 aa		4.62	□□□□□ -1.67
TFB1	YDR311W	GUA1	P38625	525 aa	Known RBP	4.62	□□□□□ -1.67
TFB1	YDR311W	NUP42	P49686	430 aa	Known RBP	4.61	□□□□□ -1.67
TFB1	YDR311W	MAM3	Q12296	706 aa		4.61	□□□□□ -1.67
TFB1	YDR311W	IES2	P40154	320 aa		4.6	□□□□□ -1.67
TFB1	YDR311W	BNI4	P53858	892 aa		4.6	□□□□□ -1.67
TFB1	YDR311W	AIM7	Q12156	149 aa		4.6	□□□□□ -1.67
TFB1	YDR311W	VRP1	P37370	817 aa		4.6	□□□□□ -1.67
TFB1	YDR311W	ISU2	Q12056	156 aa		4.6	□□□□□ -1.67
TFB1	YDR311W	COX6	P00427	148 aa		4.58	□□□□□ -1.68
TFB1	YDR311W	YML082W	Q04533	649 aa	Known RBP	4.58	□□□□□ -1.68
TFB1	YDR311W	XDJ1	P39102	459 aa		4.57	□□□□□ -1.68
TFB1	YDR311W	GAP1	P19145	602 aa	Predicted RBP	4.56	□□□□□ -1.68
TFB1	YDR311W	KIC1	P38692	1080 aa		4.56	□□□□□ -1.68
TFB1	YDR311W	MAK21	Q12176	1025 aa	Known RBP	4.56	□□□□□ -1.68
TFB1	YDR311W	RAM1	P22007	431 aa		4.56	□□□□□ -1.68
TFB1	YDR311W	PTC2	P39966	464 aa	Known RBP	4.56	□□□□□ -1.68
TFB1	YDR311W	HGH1	P48362	394 aa	Known RBP	4.55	□□□□□ -1.68
TFB1	YDR311W	YPR015C	Q12531	247 aa		4.54	□□□□□ -1.68
TFB1	YDR311W	RPP1B	P10622	106 aa	Known RBP	4.53	□□□□□ -1.68
TFB1	YDR311W	ORC6	P38826	435 aa		4.53	□□□□□ -1.68
TFB1	YDR311W	PDR1	P12383	1068 aa		4.52	□□□□□ -1.69
TFB1	YDR311W	RGA1	P39083	1007 aa		4.52	□□□□□ -1.69
TFB1	YDR311W	ATF2	P53296	535 aa		4.52	□□□□□ -1.69
TFB1	YDR311W	TFB3	Q03290	321 aa		4.52	□□□□□ -1.69
TFB1	YDR311W	CSC1	Q06538	782 aa		4.52	□□□□□ -1.69
TFB1	YDR311W	HPC2	Q01448	625 aa		4.51	□□□□□ -1.69
TFB1	YDR311W	TFB4	Q12004	338 aa		4.5	□□□□□ -1.69
TFB1	YDR311W	PKC1	P24583	1151 aa		4.5	□□□□□ -1.69
TFB1	YDR311W	YRR1	Q12172	810 aa		4.5	□□□□□ -1.69
TFB1	YDR311W	MVP1	P40959	511 aa	Known RBP	4.48	□□□□□ -1.69
TFB1	YDR311W	RGR1	P19263	1082 aa		4.48	□□□□□ -1.69
TFB1	YDR311W	PEX21	P50091	288 aa		4.48	□□□□□ -1.69
TFB1	YDR311W	YML020W	Q03722	664 aa		4.48	□□□□□ -1.69
TFB1	YDR311W	TUM1	Q08686	304 aa	Known RBP	4.48	□□□□□ -1.69
TFB1	YDR311W	SUB2	Q07478	446 aa	Known RBP	4.46	□□□□□ -1.7
TFB1	YDR311W	BUD20	Q08004	166 aa	Predicted RBP	4.46	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms