RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W LDB19Q12502 818 aa9.84□□□□□ -0.83
SHR3YDL212W SOL3P38858 249 aa9.83□□□□□ -0.84
SHR3YDL212W NST1P53935 1240 aa9.82□□□□□ -0.84
SHR3YDL212W SAS10Q12136 610 aaPredicted RBP9.81□□□□□ -0.84
SHR3YDL212W YEL023CP39992 682 aa9.78□□□□□ -0.84
SHR3YDL212W FKH1P40466 484 aa9.78□□□□□ -0.84
SHR3YDL212W IFH1P39520 1085 aa9.77□□□□□ -0.85
SHR3YDL212W VPS70P47161 811 aa9.76□□□□□ -0.85
SHR3YDL212W RTG1P32607 177 aa9.75□□□□□ -0.85
SHR3YDL212W DAN4P47179 1161 aa9.75□□□□□ -0.85
SHR3YDL212W YGR273CP53329 174 aa9.74□□□□□ -0.85
SHR3YDL212W YNL035CP53962 389 aaKnown RBP9.74□□□□□ -0.85
SHR3YDL212W AIR2Q12476 344 aaKnown RBP9.72□□□□□ -0.85
SHR3YDL212W ILV3P39522 585 aaKnown RBP9.71□□□□□ -0.86
SHR3YDL212W JIP4Q03361 876 aa9.71□□□□□ -0.86
SHR3YDL212W PTC4P38089 393 aa9.7□□□□□ -0.86
SHR3YDL212W MPH3P0CE00 602 aa9.66□□□□□ -0.86
SHR3YDL212W SEC61P32915 480 aa9.66□□□□□ -0.86
SHR3YDL212W AI4P03878 556 aa9.65□□□□□ -0.86
SHR3YDL212W VHR2P40041 505 aa9.65□□□□□ -0.86
SHR3YDL212W UBP14P38237 781 aaKnown RBP9.64□□□□□ -0.87
SHR3YDL212W YLR326WQ06170 240 aaKnown RBP9.64□□□□□ -0.87
SHR3YDL212W NCR1Q12200 1170 aa9.62□□□□□ -0.87
SHR3YDL212W KEX1P09620 729 aa9.61□□□□□ -0.87
SHR3YDL212W REF2P42073 533 aaPredicted RBP9.61□□□□□ -0.87
SHR3YDL212W YDR090CQ03193 310 aa9.59□□□□□ -0.87
SHR3YDL212W CKB1P43639 278 aa9.58□□□□□ -0.88
SHR3YDL212W PML39Q03760 334 aa9.56□□□□□ -0.88
SHR3YDL212W PCS60P38137 543 aaKnown RBP RIP-Chip data9.54□□□□□ -0.88not detected
SHR3YDL212W MID1P41821 548 aa9.54□□□□□ -0.88
SHR3YDL212W YDL129WQ07555 291 aa9.53□□□□□ -0.88
SHR3YDL212W SLI15P38283 698 aa9.52□□□□□ -0.89
SHR3YDL212W TFG1P41895 735 aaPredicted RBP9.51□□□□□ -0.89
SHR3YDL212W PBS2P08018 668 aa9.5□□□□□ -0.89
SHR3YDL212W SAP30P38429 201 aa9.5□□□□□ -0.89
SHR3YDL212W RAD54P32863 898 aa9.49□□□□□ -0.89
SHR3YDL212W YJL171CP46992 396 aa9.49□□□□□ -0.89
SHR3YDL212W BMT6Q12291 365 aa9.49□□□□□ -0.89
SHR3YDL212W YDR344CQ05510 147 aa9.48□□□□□ -0.89
SHR3YDL212W COX6P00427 148 aa9.46□□□□□ -0.9
SHR3YDL212W DSF2P38213 736 aa9.44□□□□□ -0.9
SHR3YDL212W MAK21Q12176 1025 aaKnown RBP9.44□□□□□ -0.9
SHR3YDL212W MPC54Q08550 464 aa9.42□□□□□ -0.9
SHR3YDL212W SPB4P25808 606 aaPredicted RBP9.41□□□□□ -0.9
SHR3YDL212W CDC73Q06697 393 aa9.41□□□□□ -0.9
SHR3YDL212W KIC1P38692 1080 aa9.4□□□□□ -0.9
SHR3YDL212W PEX29Q03370 554 aa9.39□□□□□ -0.91
SHR3YDL212W MAM3Q12296 706 aa9.37□□□□□ -0.91
SHR3YDL212W ORC6P38826 435 aa9.36□□□□□ -0.91
SHR3YDL212W IES2P40154 320 aa9.35□□□□□ -0.91
SHR3YDL212W DPL1Q05567 589 aa9.35□□□□□ -0.91
SHR3YDL212W ARH1P48360 493 aa9.33□□□□□ -0.92
SHR3YDL212W GAP1P19145 602 aaPredicted RBP9.31□□□□□ -0.92
SHR3YDL212W PRE3P38624 215 aa9.31□□□□□ -0.92
SHR3YDL212W NUP42P49686 430 aaKnown RBP9.31□□□□□ -0.92
SHR3YDL212W NMA111P53920 997 aa9.3□□□□□ -0.92
SHR3YDL212W HAP5Q02516 242 aa9.28□□□□□ -0.92
SHR3YDL212W ELP4Q02884 456 aaKnown RBP9.28□□□□□ -0.92
SHR3YDL212W DIT2P21595 489 aa9.27□□□□□ -0.93
SHR3YDL212W CHL1P22516 861 aaPredicted RBP9.25□□□□□ -0.93
SHR3YDL212W ISU2Q12056 156 aa9.25□□□□□ -0.93
SHR3YDL212W LEU3P08638 886 aa9.24□□□□□ -0.93
SHR3YDL212W RPP1BP10622 106 aaKnown RBP9.22□□□□□ -0.93
SHR3YDL212W MVP1P40959 511 aaKnown RBP9.22□□□□□ -0.93
SHR3YDL212W CSC1Q06538 782 aa9.22□□□□□ -0.93
SHR3YDL212W RGR1P19263 1082 aa9.21□□□□□ -0.94
SHR3YDL212W PSE1P32337 1089 aaKnown RBP9.2□□□□□ -0.94
SHR3YDL212W BNI4P53858 892 aa9.2□□□□□ -0.94
SHR3YDL212W SPT23P35210 1082 aa9.19□□□□□ -0.94
SHR3YDL212W TFB4Q12004 338 aa9.19□□□□□ -0.94
SHR3YDL212W PDR1P12383 1068 aa9.18□□□□□ -0.94
SHR3YDL212W YRR1Q12172 810 aa9.17□□□□□ -0.94
SHR3YDL212W RAM1P22007 431 aa9.16□□□□□ -0.94
SHR3YDL212W PEX21P50091 288 aa9.16□□□□□ -0.94
SHR3YDL212W TUM1Q08686 304 aaKnown RBP9.16□□□□□ -0.94
SHR3YDL212W YPR015CQ12531 247 aa9.15□□□□□ -0.94
SHR3YDL212W YNR021WP53723 404 aaKnown RBP9.14□□□□□ -0.95
SHR3YDL212W GLC3P32775 704 aa9.13□□□□□ -0.95
SHR3YDL212W YPR109WQ06104 294 aa9.13□□□□□ -0.95
SHR3YDL212W PTC2P39966 464 aaKnown RBP9.12□□□□□ -0.95
SHR3YDL212W YML082WQ04533 649 aaKnown RBP9.1□□□□□ -0.95
SHR3YDL212W NUD1P32336 851 aa9.05□□□□□ -0.96
SHR3YDL212W BCK2P33306 851 aa9.05□□□□□ -0.96
SHR3YDL212W VRP1P37370 817 aa9.05□□□□□ -0.96
SHR3YDL212W STR2P47164 639 aa9.05□□□□□ -0.96
SHR3YDL212W TEA1P47988 759 aa9.03□□□□□ -0.96
SHR3YDL212W ISM1P48526 1002 aa9.03□□□□□ -0.96
SHR3YDL212W CLB5P30283 435 aa9.02□□□□□ -0.97
SHR3YDL212W ATF2P53296 535 aa9.01□□□□□ -0.97
SHR3YDL212W AIM7Q12156 149 aa9.01□□□□□ -0.97
SHR3YDL212W RPN1P38764 993 aaKnown RBP9□□□□□ -0.97
SHR3YDL212W BUD20Q08004 166 aaPredicted RBP9□□□□□ -0.97
SHR3YDL212W NIS1P53939 407 aa8.99□□□□□ -0.97
SHR3YDL212W TY1A-DR4O74302 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-HP0C2I4 478 aaKnown RBP8.97□□□□□ -0.97
SHR3YDL212W TY1A-AP0CX57 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-PR1P0CX58 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-ORP0CX59 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-PR2P0CX60 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-DR5P0CX65 440 aa8.97□□□□□ -0.97
Retrieved 100 of 5,963 RNA–protein pairs in 11.1 ms