RNA–Protein interactions for RNA: YDL042C

SIR2, Transcript of Conserved NAD+ dependent histone deacetylase of the Sirtuin family, yeast

Gene SIR2, Length 1,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR2	YDL042C	YOL036W	Q08206	761 aa		10.89	□□□□□ -0.67
SIR2	YDL042C	SET4	P42948	560 aa		10.87	□□□□□ -0.67
SIR2	YDL042C	YGR273C	P53329	174 aa		10.87	□□□□□ -0.67
SIR2	YDL042C	ABP1	P15891	592 aa	Known RBP	10.85	□□□□□ -0.67
SIR2	YDL042C	DCW1	P36091	449 aa		10.85	□□□□□ -0.67
SIR2	YDL042C	NUP42	P49686	430 aa	Known RBP	10.85	□□□□□ -0.67
SIR2	YDL042C	YDR090C	Q03193	310 aa		10.84	□□□□□ -0.67
SIR2	YDL042C	YLR326W	Q06170	240 aa	Known RBP	10.84	□□□□□ -0.67
SIR2	YDL042C	DIT2	P21595	489 aa		10.83	□□□□□ -0.68
SIR2	YDL042C	SOL3	P38858	249 aa		10.82	□□□□□ -0.68
SIR2	YDL042C	MSB4	Q12317	492 aa		10.81	□□□□□ -0.68
SIR2	YDL042C	WSC3	Q12215	556 aa		10.8	□□□□□ -0.68
SIR2	YDL042C	HTA1	P04911	132 aa	Known RBP	10.79	□□□□□ -0.68
SIR2	YDL042C	HTA2	P04912	132 aa		10.79	□□□□□ -0.68
SIR2	YDL042C	GLC3	P32775	704 aa		10.79	□□□□□ -0.68
SIR2	YDL042C	KIC1	P38692	1080 aa		10.79	□□□□□ -0.68
SIR2	YDL042C	KEX1	P09620	729 aa		10.77	□□□□□ -0.69
SIR2	YDL042C	KIN1	P13185	1064 aa		10.76	□□□□□ -0.69
SIR2	YDL042C	AIM7	Q12156	149 aa		10.76	□□□□□ -0.69
SIR2	YDL042C	RAD54	P32863	898 aa		10.75	□□□□□ -0.69
SIR2	YDL042C	DMA2	P53924	522 aa		10.75	□□□□□ -0.69
SIR2	YDL042C	NST1	P53935	1240 aa		10.74	□□□□□ -0.69
SIR2	YDL042C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	10.73	□□□□□ -0.69	not detected
SIR2	YDL042C	YBL029C-A	Q3E756	94 aa		10.72	□□□□□ -0.69
SIR2	YDL042C	EAP1	P36041	632 aa	Known RBP	10.7	□□□□□ -0.7
SIR2	YDL042C	ATF2	P53296	535 aa		10.7	□□□□□ -0.7
SIR2	YDL042C	YEL023C	P39992	682 aa		10.69	□□□□□ -0.7
SIR2	YDL042C	AI4	P03878	556 aa		10.68	□□□□□ -0.7
SIR2	YDL042C	MPH3	P0CE00	602 aa		10.68	□□□□□ -0.7
SIR2	YDL042C	VNX1	P42839	908 aa		10.67	□□□□□ -0.7
SIR2	YDL042C	TRP5	P00931	707 aa	Known RBP	10.64	□□□□□ -0.71
SIR2	YDL042C	UBP9	P39967	754 aa		10.63	□□□□□ -0.71
SIR2	YDL042C	ILV3	P39522	585 aa	Known RBP	10.63	□□□□□ -0.71
SIR2	YDL042C	PSE1	P32337	1089 aa	Known RBP	10.62	□□□□□ -0.71
SIR2	YDL042C	PTC4	P38089	393 aa		10.62	□□□□□ -0.71
SIR2	YDL042C	DAN4	P47179	1161 aa		10.61	□□□□□ -0.71
SIR2	YDL042C	TIF11	P38912	153 aa	Known RBP	10.6	□□□□□ -0.71
SIR2	YDL042C	ULI1	P43604	169 aa		10.6	□□□□□ -0.71
SIR2	YDL042C	SPP1	Q03012	353 aa		10.6	□□□□□ -0.71
SIR2	YDL042C	ORC6	P38826	435 aa		10.58	□□□□□ -0.72
SIR2	YDL042C	JIP4	Q03361	876 aa		10.57	□□□□□ -0.72
SIR2	YDL042C	SLI15	P38283	698 aa		10.57	□□□□□ -0.72
SIR2	YDL042C	GUA1	P38625	525 aa	Known RBP	10.54	□□□□□ -0.72
SIR2	YDL042C	IOC2	Q12072	812 aa		10.51	□□□□□ -0.73
SIR2	YDL042C	RPP1B	P10622	106 aa	Known RBP	10.5	□□□□□ -0.73
SIR2	YDL042C	HGH1	P48362	394 aa	Known RBP	10.5	□□□□□ -0.73
SIR2	YDL042C	RGR1	P19263	1082 aa		10.49	□□□□□ -0.73
SIR2	YDL042C	TEA1	P47988	759 aa		10.48	□□□□□ -0.73
SIR2	YDL042C	MVP1	P40959	511 aa	Known RBP	10.47	□□□□□ -0.73
SIR2	YDL042C	YNL035C	P53962	389 aa	Known RBP	10.47	□□□□□ -0.73
SIR2	YDL042C	GAP1	P19145	602 aa	Predicted RBP	10.45	□□□□□ -0.74
SIR2	YDL042C	CSC1	Q06538	782 aa		10.45	□□□□□ -0.74
SIR2	YDL042C	CDC73	Q06697	393 aa		10.44	□□□□□ -0.74
SIR2	YDL042C	LDB19	Q12502	818 aa		10.44	□□□□□ -0.74
SIR2	YDL042C	HPC2	Q01448	625 aa		10.43	□□□□□ -0.74
SIR2	YDL042C	PML39	Q03760	334 aa		10.43	□□□□□ -0.74
SIR2	YDL042C	CLB5	P30283	435 aa		10.42	□□□□□ -0.74
SIR2	YDL042C	RTG1	P32607	177 aa		10.41	□□□□□ -0.74
SIR2	YDL042C	MID1	P41821	548 aa		10.41	□□□□□ -0.74
SIR2	YDL042C	CSN12	P47130	423 aa		10.41	□□□□□ -0.74
SIR2	YDL042C	SEC61	P32915	480 aa		10.39	□□□□□ -0.75
SIR2	YDL042C	SSA2	P10592	639 aa	Known RBP	10.38	□□□□□ -0.75
SIR2	YDL042C	PEX21	P50091	288 aa		10.38	□□□□□ -0.75
SIR2	YDL042C	YPR109W	Q06104	294 aa		10.38	□□□□□ -0.75
SIR2	YDL042C	TFB4	Q12004	338 aa		10.38	□□□□□ -0.75
SIR2	YDL042C	TFB3	Q03290	321 aa		10.36	□□□□□ -0.75
SIR2	YDL042C	DPL1	Q05567	589 aa		10.36	□□□□□ -0.75
SIR2	YDL042C	RLF2	Q12495	606 aa		10.36	□□□□□ -0.75
SIR2	YDL042C	MPC54	Q08550	464 aa		10.35	□□□□□ -0.75
SIR2	YDL042C	BRL1	P38770	471 aa		10.34	□□□□□ -0.75
SIR2	YDL042C	TFG1	P41895	735 aa	Predicted RBP	10.34	□□□□□ -0.75
SIR2	YDL042C	TUM1	Q08686	304 aa	Known RBP	10.34	□□□□□ -0.75
SIR2	YDL042C	NIS1	P53939	407 aa		10.33	□□□□□ -0.76
SIR2	YDL042C	PEX29	Q03370	554 aa		10.32	□□□□□ -0.76
SIR2	YDL042C	NCR1	Q12200	1170 aa		10.31	□□□□□ -0.76
SIR2	YDL042C	BUD31	P25337	157 aa	Predicted RBP	10.3	□□□□□ -0.76
SIR2	YDL042C	YMR196W	Q04336	1088 aa		10.3	□□□□□ -0.76
SIR2	YDL042C	TYW1	Q08960	810 aa	Known RBP	10.3	□□□□□ -0.76
SIR2	YDL042C	KTR1	P27810	393 aa	Known RBP	10.29	□□□□□ -0.76
SIR2	YDL042C	FPK1	P53739	893 aa		10.29	□□□□□ -0.76
SIR2	YDL042C	YDL129W	Q07555	291 aa		10.28	□□□□□ -0.76
SIR2	YDL042C	ISU2	Q12056	156 aa		10.28	□□□□□ -0.76
SIR2	YDL042C	GLN1	P32288	370 aa	Known RBP	10.26	□□□□□ -0.77
SIR2	YDL042C	HST2	P53686	357 aa		10.26	□□□□□ -0.77
SIR2	YDL042C	NMA111	P53920	997 aa		10.26	□□□□□ -0.77
SIR2	YDL042C	YRR1	Q12172	810 aa		10.26	□□□□□ -0.77
SIR2	YDL042C	PKC1	P24583	1151 aa		10.25	□□□□□ -0.77
SIR2	YDL042C	MMP1	Q12372	583 aa		10.23	□□□□□ -0.77
SIR2	YDL042C	SIT4	P20604	311 aa		10.22	□□□□□ -0.77
SIR2	YDL042C	SCJ1	P25303	377 aa		10.2	□□□□□ -0.78
SIR2	YDL042C	FKH1	P40466	484 aa		10.2	□□□□□ -0.78
SIR2	YDL042C	ESS1	P22696	170 aa		10.18	□□□□□ -0.78
SIR2	YDL042C	SAP30	P38429	201 aa		10.18	□□□□□ -0.78
SIR2	YDL042C	PKH3	Q03306	898 aa	Predicted RBP	10.17	□□□□□ -0.78
SIR2	YDL042C	HAP5	Q02516	242 aa		10.15	□□□□□ -0.78
SIR2	YDL042C	YJL007C	P47080	104 aa		10.15	□□□□□ -0.79
SIR2	YDL042C	NUD1	P32336	851 aa		10.13	□□□□□ -0.79
SIR2	YDL042C	ARH1	P48360	493 aa		10.13	□□□□□ -0.79
SIR2	YDL042C	SLY41	P22215	453 aa		10.12	□□□□□ -0.79
SIR2	YDL042C	YJU3	P28321	313 aa		10.12	□□□□□ -0.79

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