RNA–Protein interactions for RNA: YDL042C

SIR2, Transcript of Conserved NAD+ dependent histone deacetylase of the Sirtuin family, yeast

Gene SIR2, Length 1,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR2	YDL042C	DRS1	P32892	752 aa	Known RBP	18.15	■□□□□ 0.5
SIR2	YDL042C	MTC1	P47018	478 aa	Known RBP	17.8	■□□□□ 0.44
SIR2	YDL042C	BFR2	Q06631	534 aa	Known RBP	15.81	■□□□□ 0.12
SIR2	YDL042C	DIP2	Q12220	943 aa	Predicted RBP	15.37	■□□□□ 0.05
SIR2	YDL042C	AVT3	P36062	692 aa		15.21	■□□□□ 0.03
SIR2	YDL042C	TFA1	P36100	482 aa		15.02	□□□□□ -0.01
SIR2	YDL042C	ISW2	Q08773	1120 aa		14.45	□□□□□ -0.1
SIR2	YDL042C	RSE1	Q04693	1361 aa	Known RBP	14.42	□□□□□ -0.1
SIR2	YDL042C	FAP1	P53971	965 aa		14.36	□□□□□ -0.11
SIR2	YDL042C	RPG1	P38249	964 aa	Known RBP	14.24	□□□□□ -0.13
SIR2	YDL042C	PRI1	P10363	409 aa		14.16	□□□□□ -0.14
SIR2	YDL042C	AAD16	Q02895	342 aa		13.88	□□□□□ -0.19
SIR2	YDL042C	RPL17A	P05740	184 aa	Known RBP	13.87	□□□□□ -0.19
SIR2	YDL042C	RPL17B	P46990	184 aa	Known RBP	13.87	□□□□□ -0.19
SIR2	YDL042C	REB1	P21538	810 aa		13.69	□□□□□ -0.22
SIR2	YDL042C	TSR3	Q12094	313 aa	Known RBP	13.47	□□□□□ -0.25
SIR2	YDL042C	PRY3	P47033	881 aa		13.41	□□□□□ -0.26
SIR2	YDL042C	SPT21	P35209	758 aa		13.35	□□□□□ -0.27
SIR2	YDL042C	RIM101	P33400	625 aa		13.24	□□□□□ -0.29
SIR2	YDL042C	RQC2	Q12532	1038 aa	Known RBP	13.02	□□□□□ -0.33
SIR2	YDL042C	PTP3	P40048	928 aa		12.97	□□□□□ -0.33
SIR2	YDL042C	MRPL32	P25348	183 aa		12.95	□□□□□ -0.34
SIR2	YDL042C	YKR023W	P36119	530 aa	Known RBP	12.88	□□□□□ -0.35
SIR2	YDL042C	OXP1	P28273	1286 aa		12.83	□□□□□ -0.35
SIR2	YDL042C	SSP1	P38871	571 aa		12.78	□□□□□ -0.36
SIR2	YDL042C	YAH1	Q12184	172 aa	Known RBP	12.7	□□□□□ -0.38
SIR2	YDL042C	YIL055C	P40523	627 aa	Known RBP	12.7	□□□□□ -0.38
SIR2	YDL042C	HAA1	Q12753	694 aa	Known RBP	12.66	□□□□□ -0.38
SIR2	YDL042C	YCK3	P39962	524 aa		12.65	□□□□□ -0.38
SIR2	YDL042C	HO	P09932	586 aa		12.64	□□□□□ -0.39
SIR2	YDL042C	TFC8	Q12308	588 aa		12.62	□□□□□ -0.39
SIR2	YDL042C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	12.56	□□□□□ -0.4	not detected
SIR2	YDL042C	CDC27	P38042	758 aa		12.54	□□□□□ -0.4
SIR2	YDL042C	DCD1	P06773	312 aa		12.54	□□□□□ -0.4
SIR2	YDL042C	YLR271W	Q06152	274 aa		12.54	□□□□□ -0.4
SIR2	YDL042C	DMA1	P38823	416 aa		12.48	□□□□□ -0.41
SIR2	YDL042C	RSM7	P47150	247 aa		12.47	□□□□□ -0.41
SIR2	YDL042C	MGA2	P40578	1113 aa		12.3	□□□□□ -0.44
SIR2	YDL042C	BCH2	P36122	765 aa		12.28	□□□□□ -0.44
SIR2	YDL042C	AI2	P03876	854 aa		12.24	□□□□□ -0.45
SIR2	YDL042C	CST9	Q06032	482 aa		12.17	□□□□□ -0.46
SIR2	YDL042C	BBC1	P47068	1157 aa		12.16	□□□□□ -0.46
SIR2	YDL042C	PSD2	P53037	1138 aa	Known RBP	12.16	□□□□□ -0.46
SIR2	YDL042C	EPS1	P40557	701 aa		12.08	□□□□□ -0.48
SIR2	YDL042C	SCY1	P53009	804 aa		12.03	□□□□□ -0.48
SIR2	YDL042C	UBP10	P53874	792 aa	Predicted RBP	12	□□□□□ -0.49
SIR2	YDL042C	YGL015C	P33199	130 aa		12	□□□□□ -0.49
SIR2	YDL042C	BDF1	P35817	686 aa		11.99	□□□□□ -0.49
SIR2	YDL042C	MAP2	P38174	421 aa	Known RBP	11.99	□□□□□ -0.49
SIR2	YDL042C	MRM1	P25270	412 aa		11.88	□□□□□ -0.51
SIR2	YDL042C	SLX5	P32828	619 aa	Known RBP	11.79	□□□□□ -0.52
SIR2	YDL042C	RAM2	P29703	316 aa		11.75	□□□□□ -0.53
SIR2	YDL042C	RTG3	P38165	486 aa		11.75	□□□□□ -0.53
SIR2	YDL042C	RCR1	P38212	213 aa		11.73	□□□□□ -0.53
SIR2	YDL042C	SAS10	Q12136	610 aa	Predicted RBP	11.72	□□□□□ -0.53
SIR2	YDL042C	SET1	P38827	1080 aa	Known RBP	11.58	□□□□□ -0.56
SIR2	YDL042C	VPS29	P38759	282 aa		11.57	□□□□□ -0.56
SIR2	YDL042C	MAK11	P20484	414 aa	Known RBP	11.55	□□□□□ -0.56
SIR2	YDL042C	TIF4632	P39936	914 aa	Known RBP	11.53	□□□□□ -0.56
SIR2	YDL042C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.48	□□□□□ -0.57	not detected
SIR2	YDL042C	LEO1	P38439	464 aa		11.43	□□□□□ -0.58
SIR2	YDL042C	TGL3	P40308	642 aa		11.43	□□□□□ -0.58
SIR2	YDL042C	IFH1	P39520	1085 aa		11.42	□□□□□ -0.58
SIR2	YDL042C	LEU3	P08638	886 aa		11.41	□□□□□ -0.58
SIR2	YDL042C	STS1	P38637	319 aa		11.4	□□□□□ -0.58
SIR2	YDL042C	YPR148C	Q06523	435 aa		11.4	□□□□□ -0.58
SIR2	YDL042C	DBP1	P24784	617 aa	Known RBP	11.4	□□□□□ -0.59
SIR2	YDL042C	COQ8	P27697	501 aa		11.4	□□□□□ -0.59
SIR2	YDL042C	YOR238W	Q08634	303 aa		11.39	□□□□□ -0.59
SIR2	YDL042C	VPS70	P47161	811 aa		11.38	□□□□□ -0.59
SIR2	YDL042C	YFR006W	P43590	535 aa		11.37	□□□□□ -0.59
SIR2	YDL042C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.36	□□□□□ -0.59	not detected
SIR2	YDL042C	MIF2	P35201	549 aa		11.34	□□□□□ -0.59
SIR2	YDL042C	CKB1	P43639	278 aa		11.33	□□□□□ -0.6
SIR2	YDL042C	YAP5	P40574	245 aa		11.33	□□□□□ -0.6
SIR2	YDL042C	NOP53	Q12080	455 aa	Known RBP	11.29	□□□□□ -0.6
SIR2	YDL042C	SPB4	P25808	606 aa	Predicted RBP	11.27	□□□□□ -0.61
SIR2	YDL042C	EDS1	P38073	919 aa		11.27	□□□□□ -0.61
SIR2	YDL042C	PIB1	Q06651	286 aa		11.27	□□□□□ -0.61
SIR2	YDL042C	PTC3	P34221	468 aa	Known RBP	11.18	□□□□□ -0.62
SIR2	YDL042C	VMA1	P17255	1071 aa	Known RBP	11.15	□□□□□ -0.62
SIR2	YDL042C	PBS2	P08018	668 aa		11.13	□□□□□ -0.63
SIR2	YDL042C	MST1	P07236	462 aa		11.11	□□□□□ -0.63
SIR2	YDL042C	RPN1	P38764	993 aa	Known RBP	11.11	□□□□□ -0.63
SIR2	YDL042C	DSF2	P38213	736 aa		11.1	□□□□□ -0.63
SIR2	YDL042C	REF2	P42073	533 aa	Predicted RBP	11.08	□□□□□ -0.64
SIR2	YDL042C	TAF7	Q05021	590 aa		11.06	□□□□□ -0.64
SIR2	YDL042C	GTT3	P39996	337 aa		11.04	□□□□□ -0.64
SIR2	YDL042C	ATH1	P48016	1211 aa		11.03	□□□□□ -0.64
SIR2	YDL042C	GRE2	Q12068	342 aa	Known RBP	11.03	□□□□□ -0.64
SIR2	YDL042C	SAM3	Q08986	587 aa		11.01	□□□□□ -0.65
SIR2	YDL042C	GUT1	P32190	709 aa		10.99	□□□□□ -0.65
SIR2	YDL042C	MAM3	Q12296	706 aa		10.98	□□□□□ -0.65
SIR2	YDL042C	GYP5	Q12344	894 aa		10.96	□□□□□ -0.65
SIR2	YDL042C	MAK21	Q12176	1025 aa	Known RBP	10.95	□□□□□ -0.66
SIR2	YDL042C	COX6	P00427	148 aa		10.92	□□□□□ -0.66
SIR2	YDL042C	VHR2	P40041	505 aa		10.91	□□□□□ -0.66
SIR2	YDL042C	IES2	P40154	320 aa		10.91	□□□□□ -0.66
SIR2	YDL042C	UBP14	P38237	781 aa	Known RBP	10.89	□□□□□ -0.67
SIR2	YDL042C	YNR021W	P53723	404 aa	Known RBP	10.89	□□□□□ -0.67

Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms