RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CARMIL1Q5VZK9 1371 aa17.68■□□□□ 0.42
SCN1A-222ENST00000642141 RUSC2Q8N2Y8 1516 aa17.67■□□□□ 0.42
SCN1A-222ENST00000642141 TTBK1Q5TCY1 1321 aaPredicted RBP17.67■□□□□ 0.42
SCN1A-222ENST00000642141 CUL7Q14999 1698 aa17.64■□□□□ 0.41
SCN1A-222ENST00000642141 KIAA0586Q9BVV6 1533 aa17.62■□□□□ 0.41
SCN1A-222ENST00000642141 NPM1P06748 294 aaKnown RBP eCLIP17.56■□□□□ 0.4
SCN1A-222ENST00000642141 RAPGEF2Q9Y4G8 1499 aa17.5■□□□□ 0.39
SCN1A-222ENST00000642141 PTPRGP23470 1445 aa17.5■□□□□ 0.39
SCN1A-222ENST00000642141 FAM69CQ0P6D2 419 aa17.49■□□□□ 0.39
SCN1A-222ENST00000642141 ADCY10Q96PN6 1610 aa17.48■□□□□ 0.39
SCN1A-222ENST00000642141 CARMIL2Q6F5E8 1435 aa17.47■□□□□ 0.39
SCN1A-222ENST00000642141 IQGAP2Q13576 1575 aa17.47■□□□□ 0.39
SCN1A-222ENST00000642141 TNIKQ9UKE5 1360 aa17.45■□□□□ 0.38
SCN1A-222ENST00000642141 DISP1Q96F81 1524 aa17.41■□□□□ 0.38
SCN1A-222ENST00000642141 KIF13AQ9H1H9 1805 aa17.4■□□□□ 0.38
SCN1A-222ENST00000642141 ABCC10Q5T3U5 1492 aa17.38■□□□□ 0.37
SCN1A-222ENST00000642141 MAPKBP1O60336 1514 aa17.37■□□□□ 0.37
SCN1A-222ENST00000642141 FAM9AQ8IZU1 332 aaPredicted RBP17.36■□□□□ 0.37
SCN1A-222ENST00000642141 UGGT2Q9NYU1 1516 aa17.35■□□□□ 0.37
SCN1A-222ENST00000642141 CSRNP3Q8WYN3 585 aa17.34■□□□□ 0.37
SCN1A-222ENST00000642141 PRXQ9BXM0 1461 aa17.34■□□□□ 0.37
SCN1A-222ENST00000642141 UACAQ9BZF9 1416 aa17.33■□□□□ 0.36
SCN1A-222ENST00000642141 DIP2BQ9P265 1576 aa17.32■□□□□ 0.36
SCN1A-222ENST00000642141 ABCC2Q92887 1545 aa17.32■□□□□ 0.36
SCN1A-222ENST00000642141 P3H3Q8IVL6 736 aa17.32■□□□□ 0.36
SCN1A-222ENST00000642141 ASXL2Q76L83 1435 aa17.3■□□□□ 0.36
SCN1A-222ENST00000642141 KIAA0556O60303 1618 aa17.3■□□□□ 0.36
SCN1A-222ENST00000642141 RANGAP1P46060 587 aaPredicted RBP17.3■□□□□ 0.36
SCN1A-222ENST00000642141 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
SCN1A-222ENST00000642141 UHRF1BP1LA0JNW5 1464 aa17.28■□□□□ 0.36
SCN1A-222ENST00000642141 CTTNBP2Q8WZ74 1663 aa17.28■□□□□ 0.36
SCN1A-222ENST00000642141 TSPOAP1O95153 1857 aa17.27■□□□□ 0.36
SCN1A-222ENST00000642141 EHMT2Q96KQ7 1210 aa17.26■□□□□ 0.35
SCN1A-222ENST00000642141 PLB1Q6P1J6 1458 aa17.25■□□□□ 0.35
SCN1A-222ENST00000642141 ARID3CA6NKF2 412 aa17.25■□□□□ 0.35
SCN1A-222ENST00000642141 GOLGA3Q08378 1498 aa17.24■□□□□ 0.35
SCN1A-222ENST00000642141 KDM5BQ9UGL1 1544 aa17.21■□□□□ 0.35
SCN1A-222ENST00000642141 KCNH8Q96L42 1107 aa17.2■□□□□ 0.34
SCN1A-222ENST00000642141 ZCCHC11Q5TAX3 1644 aaKnown RBP17.2■□□□□ 0.34
SCN1A-222ENST00000642141 CHIC1Q5VXU3 224 aa17.18■□□□□ 0.34
SCN1A-222ENST00000642141 EPRSP07814 1512 aaKnown RBP17.16■□□□□ 0.34
SCN1A-222ENST00000642141 KDM6BO15054 1643 aa17.16■□□□□ 0.34
SCN1A-222ENST00000642141 EEA1Q15075 1411 aa17.15■□□□□ 0.34
SCN1A-222ENST00000642141 ABCA8O94911 1581 aa17.14■□□□□ 0.33
SCN1A-222ENST00000642141 GLI2P10070 1586 aa17.13■□□□□ 0.33
SCN1A-222ENST00000642141 WDR7Q9Y4E6 1490 aa17.12■□□□□ 0.33
SCN1A-222ENST00000642141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.1■□□□□ 0.33
SCN1A-222ENST00000642141 HNRNPUL2Q1KMD3 747 aaKnown RBP17.1■□□□□ 0.33
SCN1A-222ENST00000642141 PPRC1Q5VV67 1664 aaKnown RBP17.1■□□□□ 0.33
SCN1A-222ENST00000642141 UBTFP17480 764 aaKnown RBP17.08■□□□□ 0.32
SCN1A-222ENST00000642141 MAP3K4Q9Y6R4 1608 aa17.07■□□□□ 0.32
SCN1A-222ENST00000642141 ATP10BO94823 1461 aa17.06■□□□□ 0.32
SCN1A-222ENST00000642141 COL17A1Q9UMD9 1497 aaPredicted RBP17.06■□□□□ 0.32
SCN1A-222ENST00000642141 FHOD3Q2V2M9 1422 aa17.06■□□□□ 0.32
SCN1A-222ENST00000642141 SAMD9Q5K651 1589 aa17.06■□□□□ 0.32
SCN1A-222ENST00000642141 CD109Q6YHK3 1445 aa17.04■□□□□ 0.32
SCN1A-222ENST00000642141 KDM4FA0A1W2PPD8 638 aa17.04■□□□□ 0.32
SCN1A-222ENST00000642141 TEX14Q8IWB6 1497 aa17.02■□□□□ 0.32
SCN1A-222ENST00000642141 KIF21BO75037 1637 aa17.01■□□□□ 0.31
SCN1A-222ENST00000642141 RAPGEF6Q8TEU7 1601 aa16.99■□□□□ 0.31
SCN1A-222ENST00000642141 ATP1B4Q9UN42 357 aaPredicted RBP16.98■□□□□ 0.31
SCN1A-222ENST00000642141 NUP153P49790 1475 aaKnown RBP16.97■□□□□ 0.31
SCN1A-222ENST00000642141 MAGI3Q5TCQ9 1506 aa16.95■□□□□ 0.3
SCN1A-222ENST00000642141 CFAP43Q8NDM7 1665 aa16.94■□□□□ 0.3
SCN1A-222ENST00000642141 PLEKHD1A6NEE1 506 aa16.92■□□□□ 0.3
SCN1A-222ENST00000642141 EFCAB5A4FU69 1503 aa16.91■□□□□ 0.3
SCN1A-222ENST00000642141 ADGRL1O94910 1474 aa16.87■□□□□ 0.29
SCN1A-222ENST00000642141 RAPGEF3O95398 923 aa16.87■□□□□ 0.29
SCN1A-222ENST00000642141 ABCA9Q8IUA7 1624 aa16.86■□□□□ 0.29
SCN1A-222ENST00000642141 ARHGAP35Q9NRY4 1499 aa16.86■□□□□ 0.29
SCN1A-222ENST00000642141 CDK13Q14004 1512 aaKnown RBP16.86■□□□□ 0.29
SCN1A-222ENST00000642141 ARAP3Q8WWN8 1544 aa16.81■□□□□ 0.28
SCN1A-222ENST00000642141 FMN1Q68DA7 1419 aa16.8■□□□□ 0.28
SCN1A-222ENST00000642141 PHLDB1Q86UU1 1377 aa16.77■□□□□ 0.28
SCN1A-222ENST00000642141 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.77■□□□□ 0.28
SCN1A-222ENST00000642141 NEO1Q92859 1461 aa16.77■□□□□ 0.28
SCN1A-222ENST00000642141 TTC37Q6PGP7 1564 aa16.75■□□□□ 0.27
SCN1A-222ENST00000642141 FANCAO15360 1455 aa16.74■□□□□ 0.27
SCN1A-222ENST00000642141 AKNAQ7Z591 1439 aa16.74■□□□□ 0.27
SCN1A-222ENST00000642141 CDK11AQ9UQ88 783 aaPredicted RBP16.74■□□□□ 0.27
SCN1A-222ENST00000642141 HECW1Q76N89 1606 aa16.74■□□□□ 0.27
SCN1A-222ENST00000642141 ARID4BQ4LE39 1312 aaPredicted RBP16.73■□□□□ 0.27
SCN1A-222ENST00000642141 DENND4BO75064 1496 aaPredicted RBP16.7■□□□□ 0.26
SCN1A-222ENST00000642141 FRMPD1Q5SYB0 1578 aa16.69■□□□□ 0.26
SCN1A-222ENST00000642141 PLCH2O75038 1416 aa16.68■□□□□ 0.26
SCN1A-222ENST00000642141 CLIP1P30622 1438 aa16.68■□□□□ 0.26
SCN1A-222ENST00000642141 KIF14Q15058 1648 aa16.67■□□□□ 0.26
SCN1A-222ENST00000642141 EFCAB2Q5VUJ9 269 aa16.66■□□□□ 0.26
SCN1A-222ENST00000642141 LRRIQ1Q96JM4 1722 aa16.66■□□□□ 0.26
SCN1A-222ENST00000642141 PCF11O94913 1555 aaKnown RBP16.65■□□□□ 0.26
SCN1A-222ENST00000642141 TROQ12816 1431 aaPredicted RBP16.65■□□□□ 0.26
SCN1A-222ENST00000642141 CASKIN1Q8WXD9 1431 aa16.65■□□□□ 0.26
SCN1A-222ENST00000642141 SCAPERQ9BY12 1400 aa16.65■□□□□ 0.26
SCN1A-222ENST00000642141 CFAP74Q9C0B2 1584 aa16.64■□□□□ 0.25
SCN1A-222ENST00000642141 PLPPR3Q6T4P5 718 aa16.63■□□□□ 0.25
SCN1A-222ENST00000642141 YEATS2Q9ULM3 1422 aa16.62■□□□□ 0.25
SCN1A-222ENST00000642141 RICTORQ6R327 1708 aa16.62■□□□□ 0.25
SCN1A-222ENST00000642141 MLECQ14165 292 aa16.61■□□□□ 0.25
SCN1A-222ENST00000642141 MYT1LQ9UL68 1186 aa16.61■□□□□ 0.25
SCN1A-222ENST00000642141 ARHGAP5Q13017 1502 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms