RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 NISCHQ9Y2I1 1504 aa25.37■■□□□ 1.65
SCN1A-222ENST00000642141 ABCC9O60706 1549 aa22.63■■□□□ 1.21
SCN1A-222ENST00000642141 CCDC180Q9P1Z9 1646 aa22.57■■□□□ 1.2
SCN1A-222ENST00000642141 DCAF8L2P0C7V8 631 aa21.6■■□□□ 1.05
SCN1A-222ENST00000642141 RB1CC1Q8TDY2 1594 aa21.48■■□□□ 1.03
SCN1A-222ENST00000642141 NACADO15069 1562 aa21.36■■□□□ 1.01
SCN1A-222ENST00000642141 PABPN1Q86U42 306 aaKnown RBP eCLIP21.19■□□□□ 0.98
SCN1A-222ENST00000642141 DNAJC5BQ9UF47 199 aa21.15■□□□□ 0.98
SCN1A-222ENST00000642141 MYO15BQ96JP2 1530 aa21.04■□□□□ 0.96
SCN1A-222ENST00000642141 ZCCHC6Q5VYS8 1495 aaKnown RBP21.02■□□□□ 0.96
SCN1A-222ENST00000642141 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
SCN1A-222ENST00000642141 BICRAQ9NZM4 1560 aa20.87■□□□□ 0.93
SCN1A-222ENST00000642141 DCAF1Q9Y4B6 1507 aa20.85■□□□□ 0.93
SCN1A-222ENST00000642141 SCRIBQ14160 1630 aa20.75■□□□□ 0.91
SCN1A-222ENST00000642141 SHROOM4Q9ULL8 1493 aa20.46■□□□□ 0.87
SCN1A-222ENST00000642141 CC2D2AQ9P2K1 1620 aa20.37■□□□□ 0.85
SCN1A-222ENST00000642141 EIF4G1Q04637 1599 aaKnown RBP20.35■□□□□ 0.85
SCN1A-222ENST00000642141 CECR2Q9BXF3 1484 aa20.32■□□□□ 0.84
SCN1A-222ENST00000642141 NCAPD3P42695 1498 aa19.74■□□□□ 0.75
SCN1A-222ENST00000642141 ATAD2BQ9ULI0 1458 aa19.74■□□□□ 0.75
SCN1A-222ENST00000642141 SMARCA4P51532 1647 aa19.73■□□□□ 0.75
SCN1A-222ENST00000642141 BAZ1AQ9NRL2 1556 aaPredicted RBP19.65■□□□□ 0.74
SCN1A-222ENST00000642141 SMARCA2P51531 1590 aa19.64■□□□□ 0.73
SCN1A-222ENST00000642141 MROH2BQ7Z745 1585 aa19.59■□□□□ 0.73
SCN1A-222ENST00000642141 BAZ1BQ9UIG0 1483 aaKnown RBP19.57■□□□□ 0.72
SCN1A-222ENST00000642141 HMGXB3Q12766 1538 aa19.56■□□□□ 0.72
SCN1A-222ENST00000642141 ERCC6Q03468 1493 aa19.5■□□□□ 0.71
SCN1A-222ENST00000642141 NESP48681 1621 aa19.49■□□□□ 0.71
SCN1A-222ENST00000642141 PEG3Q9GZU2 1588 aa19.47■□□□□ 0.71
SCN1A-222ENST00000642141 WIZO95785 1651 aa19.36■□□□□ 0.69
SCN1A-222ENST00000642141 CUX2O14529 1486 aa19.3■□□□□ 0.68
SCN1A-222ENST00000642141 RSF1Q96T23 1441 aaPredicted RBP19.25■□□□□ 0.67
SCN1A-222ENST00000642141 LAMC3Q9Y6N6 1575 aa19.24■□□□□ 0.67
SCN1A-222ENST00000642141 DNAJC5Q9H3Z4 198 aa19.22■□□□□ 0.67
SCN1A-222ENST00000642141 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
SCN1A-222ENST00000642141 PDS5BQ9NTI5 1447 aa19.18■□□□□ 0.66
SCN1A-222ENST00000642141 KIF21AQ7Z4S6 1674 aa19.15■□□□□ 0.66
SCN1A-222ENST00000642141 THOC2Q8NI27 1593 aaKnown RBP19.13■□□□□ 0.65
SCN1A-222ENST00000642141 TOP2AP11388 1531 aaKnown RBP19.07■□□□□ 0.64
SCN1A-222ENST00000642141 MRC2Q9UBG0 1479 aa19■□□□□ 0.63
SCN1A-222ENST00000642141 FANCD2Q9BXW9 1451 aa18.99■□□□□ 0.63
SCN1A-222ENST00000642141 CFTRP13569 1480 aa18.98■□□□□ 0.63
SCN1A-222ENST00000642141 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
SCN1A-222ENST00000642141 CCDC88BA6NC98 1476 aa18.93■□□□□ 0.62
SCN1A-222ENST00000642141 WDR62O43379 1518 aa18.91■□□□□ 0.62
SCN1A-222ENST00000642141 URB2Q14146 1524 aaKnown RBP18.82■□□□□ 0.6
SCN1A-222ENST00000642141 SUPT5HO00267 1087 aaKnown RBP18.7■□□□□ 0.58
SCN1A-222ENST00000642141 PRDM2Q13029 1718 aa18.7■□□□□ 0.58
SCN1A-222ENST00000642141 TOPBP1Q92547 1522 aa18.63■□□□□ 0.57
SCN1A-222ENST00000642141 ZNF608Q9ULD9 1512 aaPredicted RBP18.59■□□□□ 0.57
SCN1A-222ENST00000642141 OSCARQ8IYS5 282 aa18.58■□□□□ 0.56
SCN1A-222ENST00000642141 TRIM41Q8WV44 630 aa18.58■□□□□ 0.56
SCN1A-222ENST00000642141 IFT140Q96RY7 1462 aa18.57■□□□□ 0.56
SCN1A-222ENST00000642141 ABCC8Q09428 1581 aa18.54■□□□□ 0.56
SCN1A-222ENST00000642141 DNMBPQ6XZF7 1577 aa18.54■□□□□ 0.56
SCN1A-222ENST00000642141 AQRO60306 1485 aaKnown RBP eCLIP18.48■□□□□ 0.55
SCN1A-222ENST00000642141 RAD54L2Q9Y4B4 1467 aa18.46■□□□□ 0.54
SCN1A-222ENST00000642141 POLA1P09884 1462 aaPredicted RBP18.45■□□□□ 0.54
SCN1A-222ENST00000642141 EIF4G3O43432 1585 aaKnown RBP18.42■□□□□ 0.54
SCN1A-222ENST00000642141 TARBP1Q13395 1621 aaKnown RBP18.42■□□□□ 0.54
SCN1A-222ENST00000642141 SOGA1O94964 1423 aa18.42■□□□□ 0.54
SCN1A-222ENST00000642141 FBLN2P98095 1184 aa18.41■□□□□ 0.54
SCN1A-222ENST00000642141 TDRD9Q8NDG6 1382 aaKnown RBP18.41■□□□□ 0.54
SCN1A-222ENST00000642141 CUX1P39880 1505 aa18.39■□□□□ 0.53
SCN1A-222ENST00000642141 FGD5Q6ZNL6 1462 aa18.38■□□□□ 0.53
SCN1A-222ENST00000642141 CHD1O14646 1710 aa18.26■□□□□ 0.51
SCN1A-222ENST00000642141 RIMBP3CA6NJZ7 1639 aa18.24■□□□□ 0.51
SCN1A-222ENST00000642141 RIMBP3BA6NNM3 1639 aa18.24■□□□□ 0.51
SCN1A-222ENST00000642141 RIMBP3Q9UFD9 1639 aa18.24■□□□□ 0.51
SCN1A-222ENST00000642141 CHMP7Q8WUX9 453 aaPredicted RBP18.24■□□□□ 0.51
SCN1A-222ENST00000642141 SNAPC4Q5SXM2 1469 aa18.24■□□□□ 0.51
SCN1A-222ENST00000642141 ARHGEF11O15085 1522 aa18.2■□□□□ 0.5
SCN1A-222ENST00000642141 CYB5RLQ6IPT4 315 aa18.2■□□□□ 0.5
SCN1A-222ENST00000642141 GRIN2BQ13224 1484 aa18.19■□□□□ 0.5
SCN1A-222ENST00000642141 GAPVD1Q14C86 1478 aa18.17■□□□□ 0.5
SCN1A-222ENST00000642141 WRNQ14191 1432 aaPredicted RBP eCLIP18.15■□□□□ 0.5
SCN1A-222ENST00000642141 MAGI1Q96QZ7 1491 aaPredicted RBP18.14■□□□□ 0.49
SCN1A-222ENST00000642141 WDR97A6NE52 1622 aa18.13■□□□□ 0.49
SCN1A-222ENST00000642141 ABCA10Q8WWZ4 1543 aa18.13■□□□□ 0.49
SCN1A-222ENST00000642141 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
SCN1A-222ENST00000642141 SYNJ2O15056 1496 aa18.1■□□□□ 0.49
SCN1A-222ENST00000642141 PBRM1Q86U86 1689 aa18.09■□□□□ 0.49
SCN1A-222ENST00000642141 TOP2BQ02880 1626 aa18.09■□□□□ 0.49
SCN1A-222ENST00000642141 ABCA5Q8WWZ7 1642 aa18.06■□□□□ 0.48
SCN1A-222ENST00000642141 ARAP1Q96P48 1450 aa18.06■□□□□ 0.48
SCN1A-222ENST00000642141 BIVM-ERCC5R4GMW8 1640 aa18.05■□□□□ 0.48
SCN1A-222ENST00000642141 CLASP1Q7Z460 1538 aa18.03■□□□□ 0.48
SCN1A-222ENST00000642141 TRHP20396 242 aaPredicted RBP17.97■□□□□ 0.47
SCN1A-222ENST00000642141 GRIN2AQ12879 1464 aa17.95■□□□□ 0.46
SCN1A-222ENST00000642141 ADAMTS12P58397 1594 aa17.93■□□□□ 0.46
SCN1A-222ENST00000642141 FHAD1B1AJZ9 1412 aa17.92■□□□□ 0.46
SCN1A-222ENST00000642141 CEP170Q5SW79 1584 aa17.89■□□□□ 0.45
SCN1A-222ENST00000642141 ERICH3Q5RHP9 1530 aa17.88■□□□□ 0.45
SCN1A-222ENST00000642141 ERCC6L2Q5T890 1561 aa17.87■□□□□ 0.45
SCN1A-222ENST00000642141 NUP160Q12769 1436 aa17.86■□□□□ 0.45
SCN1A-222ENST00000642141 IGF1RP08069 1367 aa17.79■□□□□ 0.44
SCN1A-222ENST00000642141 JPH4Q96JJ6 628 aa17.79■□□□□ 0.44
SCN1A-222ENST00000642141 KIF27Q86VH2 1401 aa17.79■□□□□ 0.44
SCN1A-222ENST00000642141 PRG4Q92954 1404 aaPredicted RBP17.76■□□□□ 0.43
SCN1A-222ENST00000642141 SHROOM2Q13796 1616 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms