RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 KIF27Q86VH2 1401 aa30.48■■■□□ 2.47
CLN3-247ENST00000636351 AEBP2Q6ZN18 517 aaPredicted RBP30.48■■■□□ 2.47
CLN3-247ENST00000636351 KIAA0586Q9BVV6 1533 aa30.43■■■□□ 2.46
CLN3-247ENST00000636351 KIF13AQ9H1H9 1805 aa30.43■■■□□ 2.46
CLN3-247ENST00000636351 CUL7Q14999 1698 aa30.42■■■□□ 2.46
CLN3-247ENST00000636351 NPM1P06748 294 aaKnown RBP eCLIP30.37■■■□□ 2.45
CLN3-247ENST00000636351 ADCY10Q96PN6 1610 aa30.34■■■□□ 2.45
CLN3-247ENST00000636351 MAPKBP1O60336 1514 aa30.32■■■□□ 2.44
CLN3-247ENST00000636351 ABCC10Q5T3U5 1492 aa30.32■■■□□ 2.44
CLN3-247ENST00000636351 FAM69CQ0P6D2 419 aa30.32■■■□□ 2.44
CLN3-247ENST00000636351 CARMIL1Q5VZK9 1371 aa30.28■■■□□ 2.44
CLN3-247ENST00000636351 DIP2BQ9P265 1576 aa30.25■■■□□ 2.43
CLN3-247ENST00000636351 PTPRGP23470 1445 aa30.18■■■□□ 2.42
CLN3-247ENST00000636351 TTBK1Q5TCY1 1321 aaPredicted RBP30.17■■■□□ 2.42
CLN3-247ENST00000636351 CARMIL2Q6F5E8 1435 aa30.13■■■□□ 2.41
CLN3-247ENST00000636351 IQGAP2Q13576 1575 aa30.12■■■□□ 2.41
CLN3-247ENST00000636351 TNIKQ9UKE5 1360 aa30.12■■■□□ 2.41
CLN3-247ENST00000636351 ABCC2Q92887 1545 aa30.05■■■□□ 2.4
CLN3-247ENST00000636351 KDM6BO15054 1643 aa30.03■■■□□ 2.4
CLN3-247ENST00000636351 DISP1Q96F81 1524 aa30■■■□□ 2.39
CLN3-247ENST00000636351 RAPGEF2Q9Y4G8 1499 aa29.99■■■□□ 2.39
CLN3-247ENST00000636351 TSPOAP1O95153 1857 aa29.99■■■□□ 2.39
CLN3-247ENST00000636351 UHRF1BP1LA0JNW5 1464 aa29.96■■■□□ 2.39
CLN3-247ENST00000636351 ASXL2Q76L83 1435 aa29.96■■■□□ 2.39
CLN3-247ENST00000636351 UACAQ9BZF9 1416 aa29.95■■■□□ 2.38
CLN3-247ENST00000636351 PLB1Q6P1J6 1458 aa29.93■■■□□ 2.38
CLN3-247ENST00000636351 UGGT2Q9NYU1 1516 aa29.92■■■□□ 2.38
CLN3-247ENST00000636351 CHIC1Q5VXU3 224 aa29.9■■■□□ 2.38
CLN3-247ENST00000636351 GLI2P10070 1586 aa29.87■■■□□ 2.37
CLN3-247ENST00000636351 KIAA0556O60303 1618 aa29.86■■■□□ 2.37
CLN3-247ENST00000636351 KDM5BQ9UGL1 1544 aa29.83■■■□□ 2.37
CLN3-247ENST00000636351 PPRC1Q5VV67 1664 aaKnown RBP29.81■■■□□ 2.36
CLN3-247ENST00000636351 EPRSP07814 1512 aaKnown RBP29.78■■■□□ 2.36
CLN3-247ENST00000636351 KDM4FA0A1W2PPD8 638 aa29.78■■■□□ 2.36
CLN3-247ENST00000636351 ZCCHC11Q5TAX3 1644 aaKnown RBP29.77■■■□□ 2.36
CLN3-247ENST00000636351 CTTNBP2Q8WZ74 1663 aa29.73■■■□□ 2.35
CLN3-247ENST00000636351 MAP3K4Q9Y6R4 1608 aa29.71■■■□□ 2.35
CLN3-247ENST00000636351 GOLGA3Q08378 1498 aa29.67■■■□□ 2.34
CLN3-247ENST00000636351 PRXQ9BXM0 1461 aa29.66■■■□□ 2.34
CLN3-247ENST00000636351 COL17A1Q9UMD9 1497 aaPredicted RBP29.65■■■□□ 2.34
CLN3-247ENST00000636351 TEX14Q8IWB6 1497 aa29.64■■■□□ 2.34
CLN3-247ENST00000636351 WDR7Q9Y4E6 1490 aa29.64■■■□□ 2.34
CLN3-247ENST00000636351 EEA1Q15075 1411 aa29.62■■■□□ 2.33
CLN3-247ENST00000636351 ABCA8O94911 1581 aa29.6■■■□□ 2.33
CLN3-247ENST00000636351 FAM9AQ8IZU1 332 aaPredicted RBP29.58■■■□□ 2.33
CLN3-247ENST00000636351 CSRNP3Q8WYN3 585 aa29.54■■■□□ 2.32
CLN3-247ENST00000636351 ADGRL1O94910 1474 aa29.54■■■□□ 2.32
CLN3-247ENST00000636351 KCNH8Q96L42 1107 aa29.49■■■□□ 2.31
CLN3-247ENST00000636351 CD109Q6YHK3 1445 aa29.47■■■□□ 2.31
CLN3-247ENST00000636351 CFAP43Q8NDM7 1665 aa29.45■■■□□ 2.31
CLN3-247ENST00000636351 MAGI3Q5TCQ9 1506 aa29.45■■■□□ 2.3
CLN3-247ENST00000636351 P3H3Q8IVL6 736 aa29.44■■■□□ 2.3
CLN3-247ENST00000636351 ARID3CA6NKF2 412 aa29.4■■■□□ 2.3
CLN3-247ENST00000636351 ATP10BO94823 1461 aa29.35■■■□□ 2.29
CLN3-247ENST00000636351 SAMD9Q5K651 1589 aa29.33■■■□□ 2.29
CLN3-247ENST00000636351 KIF21BO75037 1637 aa29.31■■■□□ 2.28
CLN3-247ENST00000636351 RAPGEF6Q8TEU7 1601 aa29.25■■■□□ 2.27
CLN3-247ENST00000636351 EHMT2Q96KQ7 1210 aa29.24■■■□□ 2.27
CLN3-247ENST00000636351 ARAP3Q8WWN8 1544 aa29.22■■■□□ 2.27
CLN3-247ENST00000636351 ABCA9Q8IUA7 1624 aa29.22■■■□□ 2.27
CLN3-247ENST00000636351 RANGAP1P46060 587 aaPredicted RBP29.2■■■□□ 2.26
CLN3-247ENST00000636351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.19■■■□□ 2.26
CLN3-247ENST00000636351 HNRNPUL2Q1KMD3 747 aaKnown RBP29.19■■■□□ 2.26
CLN3-247ENST00000636351 HECW2Q9P2P5 1572 aa29.17■■■□□ 2.26
CLN3-247ENST00000636351 FHOD3Q2V2M9 1422 aa29.16■■■□□ 2.26
CLN3-247ENST00000636351 NUP153P49790 1475 aaKnown RBP29.16■■■□□ 2.26
CLN3-247ENST00000636351 PHLDB1Q86UU1 1377 aa29.12■■■□□ 2.25
CLN3-247ENST00000636351 UBTFP17480 764 aaKnown RBP29.11■■■□□ 2.25
CLN3-247ENST00000636351 NEO1Q92859 1461 aa29.09■■■□□ 2.25
CLN3-247ENST00000636351 RAPGEF3O95398 923 aa29.07■■■□□ 2.24
CLN3-247ENST00000636351 ILDR1Q86SU0 546 aaPredicted RBP29.02■■■□□ 2.24
CLN3-247ENST00000636351 EFCAB5A4FU69 1503 aa29.01■■■□□ 2.23
CLN3-247ENST00000636351 FRMPD1Q5SYB0 1578 aa29■■■□□ 2.23
CLN3-247ENST00000636351 PLEKHD1A6NEE1 506 aa28.98■■■□□ 2.23
CLN3-247ENST00000636351 ADAMTSL3P82987 1691 aa28.92■■■□□ 2.22
CLN3-247ENST00000636351 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.91■■■□□ 2.22
CLN3-247ENST00000636351 PTPRMP28827 1452 aa28.9■■■□□ 2.22
CLN3-247ENST00000636351 FANCAO15360 1455 aa28.89■■■□□ 2.22
CLN3-247ENST00000636351 DENND4BO75064 1496 aaPredicted RBP28.89■■■□□ 2.22
CLN3-247ENST00000636351 AKNAQ7Z591 1439 aa28.88■■■□□ 2.21
CLN3-247ENST00000636351 TTC37Q6PGP7 1564 aa28.88■■■□□ 2.21
CLN3-247ENST00000636351 CDK13Q14004 1512 aaKnown RBP28.87■■■□□ 2.21
CLN3-247ENST00000636351 ARID4BQ4LE39 1312 aaPredicted RBP28.87■■■□□ 2.21
CLN3-247ENST00000636351 CFAP74Q9C0B2 1584 aa28.86■■■□□ 2.21
CLN3-247ENST00000636351 ARHGEF40Q8TER5 1519 aa28.85■■■□□ 2.21
CLN3-247ENST00000636351 BCORL1Q5H9F3 1711 aa28.85■■■□□ 2.21
CLN3-247ENST00000636351 RICTORQ6R327 1708 aa28.84■■■□□ 2.21
CLN3-247ENST00000636351 MADDQ8WXG6 1647 aa28.82■■■□□ 2.2
CLN3-247ENST00000636351 ATP1B4Q9UN42 357 aaPredicted RBP28.76■■■□□ 2.19
CLN3-247ENST00000636351 FMN1Q68DA7 1419 aa28.76■■■□□ 2.19
CLN3-247ENST00000636351 ZMYM4Q5VZL5 1548 aa28.75■■■□□ 2.19
CLN3-247ENST00000636351 ARHGAP35Q9NRY4 1499 aa28.75■■■□□ 2.19
CLN3-247ENST00000636351 HECW1Q76N89 1606 aa28.74■■■□□ 2.19
CLN3-247ENST00000636351 PLCH2O75038 1416 aa28.72■■■□□ 2.19
CLN3-247ENST00000636351 YEATS2Q9ULM3 1422 aa28.72■■■□□ 2.19
CLN3-247ENST00000636351 ZFYVE16Q7Z3T8 1539 aa28.72■■■□□ 2.19
CLN3-247ENST00000636351 RIMS1Q86UR5 1692 aaKnown RBP28.7■■■□□ 2.18
CLN3-247ENST00000636351 LOC105371045A0A1W2PR82 267 aa28.69■■■□□ 2.18
CLN3-247ENST00000636351 SCAPERQ9BY12 1400 aa28.69■■■□□ 2.18
CLN3-247ENST00000636351 PCF11O94913 1555 aaKnown RBP28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms