RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 NISCHQ9Y2I1 1504 aa43.68■■■■■ 4.58
CLN3-247ENST00000636351 ABCC9O60706 1549 aa39.37■■■■□ 3.89
CLN3-247ENST00000636351 CCDC180Q9P1Z9 1646 aa39.21■■■■□ 3.87
CLN3-247ENST00000636351 RB1CC1Q8TDY2 1594 aa37.38■■■■□ 3.58
CLN3-247ENST00000636351 NACADO15069 1562 aa37.1■■■■□ 3.53
CLN3-247ENST00000636351 DNAJC5BQ9UF47 199 aa37■■■■□ 3.51
CLN3-247ENST00000636351 DCAF8L2P0C7V8 631 aa36.93■■■■□ 3.5
CLN3-247ENST00000636351 PABPN1Q86U42 306 aaKnown RBP eCLIP36.64■■■■□ 3.46
CLN3-247ENST00000636351 MYO15BQ96JP2 1530 aa36.54■■■■□ 3.44
CLN3-247ENST00000636351 UNC13AQ9UPW8 1703 aa36.51■■■■□ 3.43
CLN3-247ENST00000636351 BICRAQ9NZM4 1560 aa36.32■■■■□ 3.4
CLN3-247ENST00000636351 ZCCHC6Q5VYS8 1495 aaKnown RBP36.18■■■■□ 3.38
CLN3-247ENST00000636351 DCAF1Q9Y4B6 1507 aa36.04■■■■□ 3.36
CLN3-247ENST00000636351 SHROOM4Q9ULL8 1493 aa35.79■■■■□ 3.32
CLN3-247ENST00000636351 SCRIBQ14160 1630 aa35.77■■■■□ 3.32
CLN3-247ENST00000636351 CC2D2AQ9P2K1 1620 aa35.53■■■■□ 3.28
CLN3-247ENST00000636351 CECR2Q9BXF3 1484 aa35.47■■■■□ 3.27
CLN3-247ENST00000636351 EIF4G1Q04637 1599 aaKnown RBP35.43■■■■□ 3.26
CLN3-247ENST00000636351 NCAPD3P42695 1498 aa34.26■■■■□ 3.07
CLN3-247ENST00000636351 ATAD2BQ9ULI0 1458 aa34.16■■■■□ 3.06
CLN3-247ENST00000636351 SMARCA4P51532 1647 aa34.09■■■■□ 3.05
CLN3-247ENST00000636351 SMARCA2P51531 1590 aa34.04■■■■□ 3.04
CLN3-247ENST00000636351 DNAJC5Q9H3Z4 198 aa34.02■■■■□ 3.04
CLN3-247ENST00000636351 HMGXB3Q12766 1538 aa34■■■■□ 3.03
CLN3-247ENST00000636351 ERCC6Q03468 1493 aa34■■■■□ 3.03
CLN3-247ENST00000636351 CUX2O14529 1486 aa33.94■■■■□ 3.02
CLN3-247ENST00000636351 BAZ1AQ9NRL2 1556 aaPredicted RBP33.9■■■■□ 3.02
CLN3-247ENST00000636351 BAZ1BQ9UIG0 1483 aaKnown RBP33.82■■■■□ 3.01
CLN3-247ENST00000636351 NESP48681 1621 aa33.79■■■■□ 3
CLN3-247ENST00000636351 PEG3Q9GZU2 1588 aa33.75■■■□□ 2.99
CLN3-247ENST00000636351 MROH2BQ7Z745 1585 aa33.67■■■□□ 2.98
CLN3-247ENST00000636351 LAMC3Q9Y6N6 1575 aa33.5■■■□□ 2.95
CLN3-247ENST00000636351 THOC2Q8NI27 1593 aaKnown RBP33.45■■■□□ 2.95
CLN3-247ENST00000636351 PDS5BQ9NTI5 1447 aa33.32■■■□□ 2.92
CLN3-247ENST00000636351 KIF21AQ7Z4S6 1674 aa33.32■■■□□ 2.92
CLN3-247ENST00000636351 WIZO95785 1651 aa33.25■■■□□ 2.91
CLN3-247ENST00000636351 CADPSQ9ULU8 1353 aa33.22■■■□□ 2.91
CLN3-247ENST00000636351 MRC2Q9UBG0 1479 aa33.05■■■□□ 2.88
CLN3-247ENST00000636351 WDR62O43379 1518 aa32.97■■■□□ 2.87
CLN3-247ENST00000636351 RSF1Q96T23 1441 aaPredicted RBP32.92■■■□□ 2.86
CLN3-247ENST00000636351 CEP164Q9UPV0 1460 aa32.9■■■□□ 2.86
CLN3-247ENST00000636351 FANCD2Q9BXW9 1451 aa32.86■■■□□ 2.85
CLN3-247ENST00000636351 TOP2AP11388 1531 aaKnown RBP32.82■■■□□ 2.85
CLN3-247ENST00000636351 CFTRP13569 1480 aa32.82■■■□□ 2.84
CLN3-247ENST00000636351 URB2Q14146 1524 aaKnown RBP32.6■■■□□ 2.81
CLN3-247ENST00000636351 TRIM41Q8WV44 630 aa32.54■■■□□ 2.8
CLN3-247ENST00000636351 CCDC88BA6NC98 1476 aa32.46■■■□□ 2.79
CLN3-247ENST00000636351 PRDM2Q13029 1718 aa32.43■■■□□ 2.78
CLN3-247ENST00000636351 OSCARQ8IYS5 282 aa32.36■■■□□ 2.77
CLN3-247ENST00000636351 IFT140Q96RY7 1462 aa32.23■■■□□ 2.75
CLN3-247ENST00000636351 TOPBP1Q92547 1522 aa32.22■■■□□ 2.75
CLN3-247ENST00000636351 ZNF608Q9ULD9 1512 aaPredicted RBP32.22■■■□□ 2.75
CLN3-247ENST00000636351 ABCC8Q09428 1581 aa32.11■■■□□ 2.73
CLN3-247ENST00000636351 DNMBPQ6XZF7 1577 aa32.09■■■□□ 2.73
CLN3-247ENST00000636351 EIF4G3O43432 1585 aaKnown RBP32.03■■■□□ 2.72
CLN3-247ENST00000636351 SUPT5HO00267 1087 aaKnown RBP31.98■■■□□ 2.71
CLN3-247ENST00000636351 RIMBP3CA6NJZ7 1639 aa31.97■■■□□ 2.71
CLN3-247ENST00000636351 RIMBP3BA6NNM3 1639 aa31.97■■■□□ 2.71
CLN3-247ENST00000636351 RIMBP3Q9UFD9 1639 aa31.97■■■□□ 2.71
CLN3-247ENST00000636351 TARBP1Q13395 1621 aaKnown RBP31.93■■■□□ 2.7
CLN3-247ENST00000636351 AQRO60306 1485 aaKnown RBP eCLIP31.91■■■□□ 2.76e-6■■■■□ 25.1
CLN3-247ENST00000636351 POLA1P09884 1462 aaPredicted RBP31.9■■■□□ 2.7
CLN3-247ENST00000636351 ARHGEF11O15085 1522 aa31.87■■■□□ 2.69
CLN3-247ENST00000636351 RAD54L2Q9Y4B4 1467 aa31.79■■■□□ 2.68
CLN3-247ENST00000636351 CHD1O14646 1710 aa31.78■■■□□ 2.68
CLN3-247ENST00000636351 SOGA1O94964 1423 aa31.74■■■□□ 2.67
CLN3-247ENST00000636351 FBLN2P98095 1184 aa31.73■■■□□ 2.67
CLN3-247ENST00000636351 TDRD9Q8NDG6 1382 aaKnown RBP31.7■■■□□ 2.67
CLN3-247ENST00000636351 FGD5Q6ZNL6 1462 aa31.69■■■□□ 2.66
CLN3-247ENST00000636351 CYB5RLQ6IPT4 315 aa31.64■■■□□ 2.66
CLN3-247ENST00000636351 CUX1P39880 1505 aa31.63■■■□□ 2.65
CLN3-247ENST00000636351 SNAPC4Q5SXM2 1469 aa31.59■■■□□ 2.65
CLN3-247ENST00000636351 WDR97A6NE52 1622 aa31.57■■■□□ 2.64
CLN3-247ENST00000636351 ARAP1Q96P48 1450 aa31.56■■■□□ 2.64
CLN3-247ENST00000636351 GRIN2BQ13224 1484 aa31.47■■■□□ 2.63
CLN3-247ENST00000636351 MAGI1Q96QZ7 1491 aaPredicted RBP31.47■■■□□ 2.63
CLN3-247ENST00000636351 CHMP7Q8WUX9 453 aaPredicted RBP31.46■■■□□ 2.63
CLN3-247ENST00000636351 CLASP1Q7Z460 1538 aa31.44■■■□□ 2.62
CLN3-247ENST00000636351 SYNJ1O43426 1573 aa31.4■■■□□ 2.62
CLN3-247ENST00000636351 SYNJ2O15056 1496 aa31.39■■■□□ 2.62
CLN3-247ENST00000636351 GAPVD1Q14C86 1478 aa31.34■■■□□ 2.61
CLN3-247ENST00000636351 TRHP20396 242 aaPredicted RBP31.33■■■□□ 2.61
CLN3-247ENST00000636351 PBRM1Q86U86 1689 aa31.32■■■□□ 2.6
CLN3-247ENST00000636351 ABCA10Q8WWZ4 1543 aa31.3■■■□□ 2.6
CLN3-247ENST00000636351 ABCA5Q8WWZ7 1642 aa31.27■■■□□ 2.6
CLN3-247ENST00000636351 WRNQ14191 1432 aaPredicted RBP eCLIP31.15■■■□□ 2.58
CLN3-247ENST00000636351 TOP2BQ02880 1626 aa31.09■■■□□ 2.57
CLN3-247ENST00000636351 GRIN2AQ12879 1464 aa31.08■■■□□ 2.57
CLN3-247ENST00000636351 BIVM-ERCC5R4GMW8 1640 aa31.08■■■□□ 2.57
CLN3-247ENST00000636351 ADAMTS12P58397 1594 aa31.05■■■□□ 2.56
CLN3-247ENST00000636351 CEP170Q5SW79 1584 aa30.97■■■□□ 2.55
CLN3-247ENST00000636351 NUP160Q12769 1436 aa30.97■■■□□ 2.55
CLN3-247ENST00000636351 ERCC6L2Q5T890 1561 aa30.96■■■□□ 2.55
CLN3-247ENST00000636351 FHAD1B1AJZ9 1412 aa30.94■■■□□ 2.54
CLN3-247ENST00000636351 ERICH3Q5RHP9 1530 aa30.9■■■□□ 2.54
CLN3-247ENST00000636351 SHROOM2Q13796 1616 aa30.83■■■□□ 2.53
CLN3-247ENST00000636351 PRG4Q92954 1404 aaPredicted RBP30.69■■■□□ 2.5
CLN3-247ENST00000636351 JPH4Q96JJ6 628 aa30.63■■■□□ 2.49
CLN3-247ENST00000636351 RUSC2Q8N2Y8 1516 aa30.63■■■□□ 2.49
CLN3-247ENST00000636351 IGF1RP08069 1367 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms