RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 TIAM1Q13009 1591 aa12.42□□□□□ -0.42
VCL-207ENST00000624354 CARMIL1Q5VZK9 1371 aa12.42□□□□□ -0.42
VCL-207ENST00000624354 MAPKBP1O60336 1514 aa12.41□□□□□ -0.42
VCL-207ENST00000624354 LRRC9Q6ZRR7 1453 aa12.4□□□□□ -0.42
VCL-207ENST00000624354 FAM50AQ14320 339 aaKnown RBP12.39□□□□□ -0.43
VCL-207ENST00000624354 FHAD1B1AJZ9 1412 aa12.38□□□□□ -0.43
VCL-207ENST00000624354 PHLDB1Q86UU1 1377 aa12.37□□□□□ -0.43
VCL-207ENST00000624354 CADPSQ9ULU8 1353 aa12.37□□□□□ -0.43
VCL-207ENST00000624354 TIMELESSQ9UNS1 1208 aa12.36□□□□□ -0.43
VCL-207ENST00000624354 PRKCSHP14314 528 aaPredicted RBP12.35□□□□□ -0.43
VCL-207ENST00000624354 KCNH8Q96L42 1107 aa12.35□□□□□ -0.43
VCL-207ENST00000624354 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
VCL-207ENST00000624354 SIN3AQ96ST3 1273 aa12.34□□□□□ -0.43
VCL-207ENST00000624354 DDX10Q13206 875 aaKnown RBP12.34□□□□□ -0.43
VCL-207ENST00000624354 ATP1B4Q9UN42 357 aaPredicted RBP12.34□□□□□ -0.43
VCL-207ENST00000624354 P3H3Q8IVL6 736 aa12.32□□□□□ -0.44
VCL-207ENST00000624354 PRDM2Q13029 1718 aa12.31□□□□□ -0.44
VCL-207ENST00000624354 WDR97A6NE52 1622 aa12.31□□□□□ -0.44
VCL-207ENST00000624354 FBLN2P98095 1184 aa12.29□□□□□ -0.44
VCL-207ENST00000624354 PPP1R15AO75807 674 aaPredicted RBP12.28□□□□□ -0.44
VCL-207ENST00000624354 PCF11O94913 1555 aaKnown RBP12.28□□□□□ -0.44
VCL-207ENST00000624354 CFAP43Q8NDM7 1665 aa12.27□□□□□ -0.44
VCL-207ENST00000624354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.27□□□□□ -0.45
VCL-207ENST00000624354 FHOD3Q2V2M9 1422 aa12.26□□□□□ -0.45
VCL-207ENST00000624354 FANCD2Q9BXW9 1451 aa12.26□□□□□ -0.45
VCL-207ENST00000624354 BCANQ96GW7 911 aa12.26□□□□□ -0.45
VCL-207ENST00000624354 FYCO1Q9BQS8 1478 aa12.26□□□□□ -0.45
VCL-207ENST00000624354 ANP32CO43423 234 aa12.26□□□□□ -0.45
VCL-207ENST00000624354 CCER2I3L3R5 266 aa12.25□□□□□ -0.45
VCL-207ENST00000624354 FKBP8Q14318 412 aa12.25□□□□□ -0.45
VCL-207ENST00000624354 TDRD9Q8NDG6 1382 aaKnown RBP12.25□□□□□ -0.45
VCL-207ENST00000624354 CASKIN1Q8WXD9 1431 aa12.25□□□□□ -0.45
VCL-207ENST00000624354 RAD54L2Q9Y4B4 1467 aa12.24□□□□□ -0.45
VCL-207ENST00000624354 NEFLP07196 543 aa12.24□□□□□ -0.45
VCL-207ENST00000624354 EFCAB5A4FU69 1503 aa12.23□□□□□ -0.45
VCL-207ENST00000624354 AQRO60306 1485 aaKnown RBP eCLIP12.23□□□□□ -0.455e-7■■■□□ 18.9
VCL-207ENST00000624354 HIRIP3Q9BW71 556 aaPredicted RBP12.23□□□□□ -0.45
VCL-207ENST00000624354 TONSLQ96HA7 1378 aa12.22□□□□□ -0.45
VCL-207ENST00000624354 ERCC6Q03468 1493 aa12.22□□□□□ -0.45
VCL-207ENST00000624354 FMN1Q68DA7 1419 aa12.2□□□□□ -0.46
VCL-207ENST00000624354 ARID3CA6NKF2 412 aa12.2□□□□□ -0.46
VCL-207ENST00000624354 RBM19Q9Y4C8 960 aaKnown RBP12.2□□□□□ -0.46
VCL-207ENST00000624354 FGD6Q6ZV73 1430 aa12.2□□□□□ -0.46
VCL-207ENST00000624354 ABCA10Q8WWZ4 1543 aa12.2□□□□□ -0.46
VCL-207ENST00000624354 TRIM52Q96A61 297 aa12.19□□□□□ -0.46
VCL-207ENST00000624354 MTUS2Q5JR59 1369 aa12.19□□□□□ -0.46
VCL-207ENST00000624354 ERICH6Q7L0X2 663 aa12.18□□□□□ -0.46
VCL-207ENST00000624354 DNMBPQ6XZF7 1577 aa12.17□□□□□ -0.46
VCL-207ENST00000624354 CCDC18Q5T9S5 1454 aa12.17□□□□□ -0.46
VCL-207ENST00000624354 POLA1P09884 1462 aaPredicted RBP12.17□□□□□ -0.46
VCL-207ENST00000624354 UACAQ9BZF9 1416 aa12.17□□□□□ -0.46
VCL-207ENST00000624354 HFM1A2PYH4 1435 aa12.16□□□□□ -0.46
VCL-207ENST00000624354 TOPBP1Q92547 1522 aa12.15□□□□□ -0.46
VCL-207ENST00000624354 CUL7Q14999 1698 aa12.15□□□□□ -0.46
VCL-207ENST00000624354 SNAPC4Q5SXM2 1469 aa12.13□□□□□ -0.47
VCL-207ENST00000624354 PTPRKQ15262 1439 aa12.12□□□□□ -0.47
VCL-207ENST00000624354 PDS5BQ9NTI5 1447 aa12.12□□□□□ -0.47
VCL-207ENST00000624354 LAMC3Q9Y6N6 1575 aa12.12□□□□□ -0.47
VCL-207ENST00000624354 CTTNBP2Q8WZ74 1663 aa12.11□□□□□ -0.47
VCL-207ENST00000624354 NAIPQ13075 1403 aa12.11□□□□□ -0.47
VCL-207ENST00000624354 MYOM3Q5VTT5 1437 aa12.11□□□□□ -0.47
VCL-207ENST00000624354 PTPN23Q9H3S7 1636 aa12.1□□□□□ -0.47
VCL-207ENST00000624354 NCOA2Q15596 1464 aa12.1□□□□□ -0.47
VCL-207ENST00000624354 URB2Q14146 1524 aaKnown RBP12.09□□□□□ -0.47
VCL-207ENST00000624354 MSH5O43196 834 aa12.08□□□□□ -0.48
VCL-207ENST00000624354 KIF21AQ7Z4S6 1674 aa12.07□□□□□ -0.48
VCL-207ENST00000624354 HNRNPUQ00839 825 aaKnown RBP eCLIP12.06□□□□□ -0.48
VCL-207ENST00000624354 GRIN2BQ13224 1484 aa12.06□□□□□ -0.48
VCL-207ENST00000624354 EHBP1L1Q8N3D4 1523 aa12.05□□□□□ -0.48
VCL-207ENST00000624354 SAMD9Q5K651 1589 aa12.05□□□□□ -0.48
VCL-207ENST00000624354 MYT1LQ9UL68 1186 aa12.05□□□□□ -0.48
VCL-207ENST00000624354 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
VCL-207ENST00000624354 SUPT6HQ7KZ85 1726 aaKnown RBP12.04□□□□□ -0.48
VCL-207ENST00000624354 RRP7BPQ9NSQ0 103 aa12.04□□□□□ -0.48
VCL-207ENST00000624354 HSPA5P11021 654 aaKnown RBP12.03□□□□□ -0.48
VCL-207ENST00000624354 GAPVD1Q14C86 1478 aa12.03□□□□□ -0.48
VCL-207ENST00000624354 EIF4G2P78344 907 aaKnown RBP eCLIP12.02□□□□□ -0.492e-6■■■□□ 16.3
VCL-207ENST00000624354 CHIC2Q9UKJ5 165 aa12.02□□□□□ -0.49
VCL-207ENST00000624354 KDM5BQ9UGL1 1544 aa12.02□□□□□ -0.49
VCL-207ENST00000624354 WASHC2AQ641Q2 1341 aa12.01□□□□□ -0.49
VCL-207ENST00000624354 UGGT2Q9NYU1 1516 aa12.01□□□□□ -0.49
VCL-207ENST00000624354 FANCIQ9NVI1 1328 aa12.01□□□□□ -0.49
VCL-207ENST00000624354 ZNF608Q9ULD9 1512 aaPredicted RBP12.01□□□□□ -0.49
VCL-207ENST00000624354 ARHGEF11O15085 1522 aa11.99□□□□□ -0.49
VCL-207ENST00000624354 ABCA5Q8WWZ7 1642 aa11.99□□□□□ -0.49
VCL-207ENST00000624354 LRRIQ1Q96JM4 1722 aa11.98□□□□□ -0.49
VCL-207ENST00000624354 TCOF1Q13428 1488 aaKnown RBP11.98□□□□□ -0.49
VCL-207ENST00000624354 AKNAQ7Z591 1439 aa11.98□□□□□ -0.49
VCL-207ENST00000624354 CHMP7Q8WUX9 453 aaPredicted RBP11.98□□□□□ -0.49
VCL-207ENST00000624354 CDK11AQ9UQ88 783 aaPredicted RBP11.98□□□□□ -0.49
VCL-207ENST00000624354 DEKP35659 375 aaKnown RBP11.97□□□□□ -0.49
VCL-207ENST00000624354 MPHOSPH9Q99550 1183 aa11.97□□□□□ -0.49
VCL-207ENST00000624354 MAGI3Q5TCQ9 1506 aa11.96□□□□□ -0.49
VCL-207ENST00000624354 ERICH6BQ5W0A0 696 aa11.96□□□□□ -0.49
VCL-207ENST00000624354 CNTLNQ9NXG0 1405 aa11.96□□□□□ -0.5
VCL-207ENST00000624354 IRX6P78412 446 aaPredicted RBP11.96□□□□□ -0.5
VCL-207ENST00000624354 L3MBTL2Q969R5 705 aa11.95□□□□□ -0.5
VCL-207ENST00000624354 HECW1Q76N89 1606 aa11.95□□□□□ -0.5
VCL-207ENST00000624354 MIA2Q96PC5 1412 aa11.95□□□□□ -0.5
VCL-207ENST00000624354 DENND4BO75064 1496 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms