RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 DNMBPQ6XZF7 1577 aa15.78■□□□□ 0.12
VPS11-208ENST00000621676 ARHGAP35Q9NRY4 1499 aa15.77■□□□□ 0.12
VPS11-208ENST00000621676 NEUROD1Q13562 356 aa15.76■□□□□ 0.11
VPS11-208ENST00000621676 MRC2Q9UBG0 1479 aa15.74■□□□□ 0.11
VPS11-208ENST00000621676 KCNH8Q96L42 1107 aa15.73■□□□□ 0.11
VPS11-208ENST00000621676 ABCA10Q8WWZ4 1543 aa15.71■□□□□ 0.11
VPS11-208ENST00000621676 JPH4Q96JJ6 628 aa15.71■□□□□ 0.1
VPS11-208ENST00000621676 RRP7BPQ9NSQ0 103 aa15.7■□□□□ 0.1
VPS11-208ENST00000621676 MTUS2Q5JR59 1369 aa15.68■□□□□ 0.1
VPS11-208ENST00000621676 SNAPC4Q5SXM2 1469 aa15.66■□□□□ 0.1
VPS11-208ENST00000621676 HIRIP3Q9BW71 556 aaPredicted RBP15.63■□□□□ 0.09
VPS11-208ENST00000621676 ZNF644Q9H582 1327 aaPredicted RBP15.61■□□□□ 0.09
VPS11-208ENST00000621676 TRIM52Q96A61 297 aa15.61■□□□□ 0.09
VPS11-208ENST00000621676 SIN3AQ96ST3 1273 aa15.59■□□□□ 0.09
VPS11-208ENST00000621676 PHLDB1Q86UU1 1377 aa15.59■□□□□ 0.09
VPS11-208ENST00000621676 MYT1LQ9UL68 1186 aa15.58■□□□□ 0.08
VPS11-208ENST00000621676 GRIN2BQ13224 1484 aa15.57■□□□□ 0.08
VPS11-208ENST00000621676 FOXD1Q16676 465 aa15.57■□□□□ 0.08
VPS11-208ENST00000621676 ERICH3Q5RHP9 1530 aa15.56■□□□□ 0.08
VPS11-208ENST00000621676 CNGB1Q14028 1251 aaPredicted RBP15.56■□□□□ 0.08
VPS11-208ENST00000621676 FHAD1B1AJZ9 1412 aa15.54■□□□□ 0.08
VPS11-208ENST00000621676 IFT140Q96RY7 1462 aa15.53■□□□□ 0.08
VPS11-208ENST00000621676 CCNB3Q8WWL7 1395 aa15.52■□□□□ 0.08
VPS11-208ENST00000621676 ZEB1P37275 1124 aaPredicted RBP15.52■□□□□ 0.08
VPS11-208ENST00000621676 YTHDC1Q96MU7 727 aaKnown RBP15.5■□□□□ 0.07
VPS11-208ENST00000621676 SENP3Q9H4L4 574 aaPredicted RBP15.5■□□□□ 0.07
VPS11-208ENST00000621676 PRDM2Q13029 1718 aa15.48■□□□□ 0.07
VPS11-208ENST00000621676 TARBP1Q13395 1621 aaKnown RBP15.48■□□□□ 0.07
VPS11-208ENST00000621676 CDK13Q14004 1512 aaKnown RBP15.46■□□□□ 0.07
VPS11-208ENST00000621676 PLEKHD1A6NEE1 506 aa15.45■□□□□ 0.06
VPS11-208ENST00000621676 PLB1Q6P1J6 1458 aa15.45■□□□□ 0.06
VPS11-208ENST00000621676 CFDP1Q9UEE9 299 aaPredicted RBP15.44■□□□□ 0.06
VPS11-208ENST00000621676 ZNF326Q5BKZ1 582 aaKnown RBP15.43■□□□□ 0.06
VPS11-208ENST00000621676 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.069e-6■■■□□ 18.9
VPS11-208ENST00000621676 PCF11O94913 1555 aaKnown RBP15.42■□□□□ 0.06
VPS11-208ENST00000621676 EIF4G3O43432 1585 aaKnown RBP15.41■□□□□ 0.06
VPS11-208ENST00000621676 FMN1Q68DA7 1419 aa15.41■□□□□ 0.06
VPS11-208ENST00000621676 HNRNPMP52272 730 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS11-208ENST00000621676 GRIN2AQ12879 1464 aa15.41■□□□□ 0.06
VPS11-208ENST00000621676 CYB5RLQ6IPT4 315 aa15.41■□□□□ 0.06
VPS11-208ENST00000621676 CDK11AQ9UQ88 783 aaPredicted RBP15.4■□□□□ 0.06
VPS11-208ENST00000621676 LRRC9Q6ZRR7 1453 aa15.4■□□□□ 0.06
VPS11-208ENST00000621676 WDR62O43379 1518 aa15.4■□□□□ 0.06
VPS11-208ENST00000621676 PRG4Q92954 1404 aaPredicted RBP15.4■□□□□ 0.06
VPS11-208ENST00000621676 RAB3GAP2Q9H2M9 1393 aa15.39■□□□□ 0.05
VPS11-208ENST00000621676 ABCA5Q8WWZ7 1642 aa15.39■□□□□ 0.05
VPS11-208ENST00000621676 DIEXFQ68CQ4 756 aaKnown RBP15.36■□□□□ 0.05
VPS11-208ENST00000621676 PTPRGP23470 1445 aa15.35■□□□□ 0.05
VPS11-208ENST00000621676 POLR3GLQ9BT43 218 aa15.35■□□□□ 0.05
VPS11-208ENST00000621676 CASKIN1Q8WXD9 1431 aa15.33■□□□□ 0.04
VPS11-208ENST00000621676 THOC2Q8NI27 1593 aaKnown RBP15.32■□□□□ 0.04
VPS11-208ENST00000621676 SYNJ2O15056 1496 aa15.32■□□□□ 0.04
VPS11-208ENST00000621676 IQGAP2Q13576 1575 aa15.32■□□□□ 0.04
VPS11-208ENST00000621676 KIAA0586Q9BVV6 1533 aa15.3■□□□□ 0.04
VPS11-208ENST00000621676 OSCARQ8IYS5 282 aa15.3■□□□□ 0.04
VPS11-208ENST00000621676 CARMIL2Q6F5E8 1435 aa15.3■□□□□ 0.04
VPS11-208ENST00000621676 CUL7Q14999 1698 aa15.29■□□□□ 0.04
VPS11-208ENST00000621676 TIAM1Q13009 1591 aa15.29■□□□□ 0.04
VPS11-208ENST00000621676 ADAMTS12P58397 1594 aa15.29■□□□□ 0.04
VPS11-208ENST00000621676 PBRM1Q86U86 1689 aa15.28■□□□□ 0.04
VPS11-208ENST00000621676 NCOA2Q15596 1464 aa15.28■□□□□ 0.04
VPS11-208ENST00000621676 DHX57Q6P158 1386 aaKnown RBP15.28■□□□□ 0.04
VPS11-208ENST00000621676 PLPPR3Q6T4P5 718 aa15.28■□□□□ 0.04
VPS11-208ENST00000621676 PTPRKQ15262 1439 aa15.26■□□□□ 0.03
VPS11-208ENST00000621676 CEP170Q5SW79 1584 aa15.25■□□□□ 0.03
VPS11-208ENST00000621676 DISP1Q96F81 1524 aa15.25■□□□□ 0.03
VPS11-208ENST00000621676 SLC4A1APQ9BWU0 796 aaKnown RBP15.25■□□□□ 0.03
VPS11-208ENST00000621676 KDM2AQ9Y2K7 1162 aa15.25■□□□□ 0.03
VPS11-208ENST00000621676 WDR97A6NE52 1622 aa15.24■□□□□ 0.03
VPS11-208ENST00000621676 ZNF316A6NFI3 1004 aaPredicted RBP15.24■□□□□ 0.03
VPS11-208ENST00000621676 EPRSP07814 1512 aaKnown RBP15.24■□□□□ 0.03
VPS11-208ENST00000621676 FGD6Q6ZV73 1430 aa15.23■□□□□ 0.03
VPS11-208ENST00000621676 ERCC6L2Q5T890 1561 aa15.23■□□□□ 0.03
VPS11-208ENST00000621676 MAGI3Q5TCQ9 1506 aa15.23■□□□□ 0.03
VPS11-208ENST00000621676 TSPY4P0CV99 314 aa15.22■□□□□ 0.03
VPS11-208ENST00000621676 TSPY10P0CW01 314 aa15.22■□□□□ 0.03
VPS11-208ENST00000621676 MAGI1Q96QZ7 1491 aaPredicted RBP15.22■□□□□ 0.03
VPS11-208ENST00000621676 RGL3Q3MIN7 710 aa15.22■□□□□ 0.03
VPS11-208ENST00000621676 SETD5Q9C0A6 1442 aa15.22■□□□□ 0.03
VPS11-208ENST00000621676 NPM1P06748 294 aaKnown RBP eCLIP15.22■□□□□ 0.03
VPS11-208ENST00000621676 FYCO1Q9BQS8 1478 aa15.21■□□□□ 0.03
VPS11-208ENST00000621676 SENP3-EIF4A1A0A087X0R7 540 aa15.2■□□□□ 0.02
VPS11-208ENST00000621676 AFAP1Q8N556 730 aa15.2■□□□□ 0.02
VPS11-208ENST00000621676 RRBP1Q9P2E9 1410 aaKnown RBP15.2■□□□□ 0.02
VPS11-208ENST00000621676 CTTNBP2Q8WZ74 1663 aa15.19■□□□□ 0.02
VPS11-208ENST00000621676 MIER1Q8N108 512 aa15.18■□□□□ 0.02
VPS11-208ENST00000621676 NUP153P49790 1475 aaKnown RBP15.18■□□□□ 0.02
VPS11-208ENST00000621676 DDX10Q13206 875 aaKnown RBP15.18■□□□□ 0.02
VPS11-208ENST00000621676 MYOM3Q5VTT5 1437 aa15.16■□□□□ 0.02
VPS11-208ENST00000621676 EFCAB5A4FU69 1503 aa15.16■□□□□ 0.02
VPS11-208ENST00000621676 ARHGEF11O15085 1522 aa15.15■□□□□ 0.02
VPS11-208ENST00000621676 MPHOSPH9Q99550 1183 aa15.14■□□□□ 0.01
VPS11-208ENST00000621676 NUP160Q12769 1436 aa15.11■□□□□ 0.01
VPS11-208ENST00000621676 ATP10BO94823 1461 aa15.11■□□□□ 0.01
VPS11-208ENST00000621676 PKD2Q13563 968 aa15.1■□□□□ 0.01
VPS11-208ENST00000621676 TONSLQ96HA7 1378 aa15.09■□□□□ 0.01
VPS11-208ENST00000621676 CCDC18Q5T9S5 1454 aa15.09■□□□□ 0.01
VPS11-208ENST00000621676 KIAA0556O60303 1618 aa15.09■□□□□ 0.01
VPS11-208ENST00000621676 CHGAP10645 457 aaKnown RBP15.07■□□□□ 0
VPS11-208ENST00000621676 MLECQ14165 292 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms