RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 NISCHQ9Y2I1 1504 aa22.28■■□□□ 1.16
VPS11-208ENST00000621676 DCAF8L2P0C7V8 631 aa20.21■□□□□ 0.83
VPS11-208ENST00000621676 SHROOM4Q9ULL8 1493 aa19.77■□□□□ 0.76
VPS11-208ENST00000621676 SUPT5HO00267 1087 aaKnown RBP19.18■□□□□ 0.66
VPS11-208ENST00000621676 ABCC9O60706 1549 aa18.99■□□□□ 0.63
VPS11-208ENST00000621676 CCDC180Q9P1Z9 1646 aa18.63■□□□□ 0.57
VPS11-208ENST00000621676 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
VPS11-208ENST00000621676 PABPN1Q86U42 306 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS11-208ENST00000621676 EHMT2Q96KQ7 1210 aa18.25■□□□□ 0.51
VPS11-208ENST00000621676 SCRIBQ14160 1630 aa18.24■□□□□ 0.51
VPS11-208ENST00000621676 FAM9AQ8IZU1 332 aaPredicted RBP17.95■□□□□ 0.46
VPS11-208ENST00000621676 CECR2Q9BXF3 1484 aa17.83■□□□□ 0.45
VPS11-208ENST00000621676 CHIC1Q5VXU3 224 aa17.79■□□□□ 0.44
VPS11-208ENST00000621676 DCAF1Q9Y4B6 1507 aa17.73■□□□□ 0.43
VPS11-208ENST00000621676 LOC105371045A0A1W2PR82 267 aa17.71■□□□□ 0.43
VPS11-208ENST00000621676 NACADO15069 1562 aa17.66■□□□□ 0.42
VPS11-208ENST00000621676 RB1CC1Q8TDY2 1594 aa17.65■□□□□ 0.42
VPS11-208ENST00000621676 RSF1Q96T23 1441 aaPredicted RBP17.63■□□□□ 0.41
VPS11-208ENST00000621676 TRIM41Q8WV44 630 aa17.57■□□□□ 0.4
VPS11-208ENST00000621676 MROH2BQ7Z745 1585 aa17.51■□□□□ 0.39
VPS11-208ENST00000621676 RANGAP1P46060 587 aaPredicted RBP17.43■□□□□ 0.38
VPS11-208ENST00000621676 MYO15BQ96JP2 1530 aa17.41■□□□□ 0.38
VPS11-208ENST00000621676 TTBK1Q5TCY1 1321 aaPredicted RBP17.38■□□□□ 0.37
VPS11-208ENST00000621676 PPARGC1BQ86YN6 1023 aaKnown RBP17.37■□□□□ 0.37
VPS11-208ENST00000621676 WIZO95785 1651 aa17.34■□□□□ 0.37
VPS11-208ENST00000621676 DNAJC5BQ9UF47 199 aa17.24■□□□□ 0.35
VPS11-208ENST00000621676 UNC13AQ9UPW8 1703 aa17.18■□□□□ 0.34
VPS11-208ENST00000621676 BICRAQ9NZM4 1560 aa17.18■□□□□ 0.34
VPS11-208ENST00000621676 PCGF6Q9BYE7 350 aa17.1■□□□□ 0.33
VPS11-208ENST00000621676 BAZ1AQ9NRL2 1556 aaPredicted RBP17.09■□□□□ 0.33
VPS11-208ENST00000621676 CCDC88BA6NC98 1476 aa17.04■□□□□ 0.32
VPS11-208ENST00000621676 UBTFP17480 764 aaKnown RBP17.02■□□□□ 0.31
VPS11-208ENST00000621676 SMARCA4P51532 1647 aa17■□□□□ 0.31
VPS11-208ENST00000621676 ABCC8Q09428 1581 aa16.99■□□□□ 0.31
VPS11-208ENST00000621676 BAZ1BQ9UIG0 1483 aaKnown RBP16.95■□□□□ 0.3
VPS11-208ENST00000621676 ATAD2BQ9ULI0 1458 aa16.92■□□□□ 0.3
VPS11-208ENST00000621676 SOGA1O94964 1423 aa16.81■□□□□ 0.28
VPS11-208ENST00000621676 EIF4G1Q04637 1599 aaKnown RBP16.79■□□□□ 0.28
VPS11-208ENST00000621676 TOP2AP11388 1531 aaKnown RBP16.78■□□□□ 0.28
VPS11-208ENST00000621676 RUSC2Q8N2Y8 1516 aa16.78■□□□□ 0.28
VPS11-208ENST00000621676 SMARCA2P51531 1590 aa16.76■□□□□ 0.27
VPS11-208ENST00000621676 CSRNP3Q8WYN3 585 aa16.71■□□□□ 0.27
VPS11-208ENST00000621676 ATP1B4Q9UN42 357 aaPredicted RBP16.7■□□□□ 0.26
VPS11-208ENST00000621676 WRNQ14191 1432 aaPredicted RBP eCLIP16.66■□□□□ 0.26
VPS11-208ENST00000621676 P3H3Q8IVL6 736 aa16.66■□□□□ 0.26
VPS11-208ENST00000621676 NESP48681 1621 aa16.64■□□□□ 0.25
VPS11-208ENST00000621676 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
VPS11-208ENST00000621676 ARID3CA6NKF2 412 aa16.53■□□□□ 0.24
VPS11-208ENST00000621676 NCAPD3P42695 1498 aa16.53■□□□□ 0.24
VPS11-208ENST00000621676 FBLN2P98095 1184 aa16.49■□□□□ 0.23
VPS11-208ENST00000621676 CADPSQ9ULU8 1353 aa16.46■□□□□ 0.22
VPS11-208ENST00000621676 ITGAEP38570 1179 aa16.43■□□□□ 0.22
VPS11-208ENST00000621676 SYNJ1O43426 1573 aa16.42■□□□□ 0.22
VPS11-208ENST00000621676 HNRNPUL2Q1KMD3 747 aaKnown RBP16.41■□□□□ 0.22
VPS11-208ENST00000621676 APLP2Q06481 763 aa16.4■□□□□ 0.22
VPS11-208ENST00000621676 TRIM26Q12899 539 aaPredicted RBP16.4■□□□□ 0.22
VPS11-208ENST00000621676 TDRD9Q8NDG6 1382 aaKnown RBP16.4■□□□□ 0.22
VPS11-208ENST00000621676 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.38■□□□□ 0.21
VPS11-208ENST00000621676 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
VPS11-208ENST00000621676 PEG3Q9GZU2 1588 aa16.33■□□□□ 0.2
VPS11-208ENST00000621676 CUX2O14529 1486 aa16.3■□□□□ 0.2
VPS11-208ENST00000621676 RAPGEF2Q9Y4G8 1499 aa16.3■□□□□ 0.2
VPS11-208ENST00000621676 FANCD2Q9BXW9 1451 aa16.3■□□□□ 0.2
VPS11-208ENST00000621676 CEP162Q5TB80 1403 aa16.3■□□□□ 0.2
VPS11-208ENST00000621676 CFTRP13569 1480 aa16.29■□□□□ 0.2
VPS11-208ENST00000621676 CUX1P39880 1505 aa16.26■□□□□ 0.19
VPS11-208ENST00000621676 HMGXB3Q12766 1538 aa16.24■□□□□ 0.19
VPS11-208ENST00000621676 CCER1Q8TC90 406 aaPredicted RBP16.19■□□□□ 0.18
VPS11-208ENST00000621676 FGD5Q6ZNL6 1462 aa16.19■□□□□ 0.18
VPS11-208ENST00000621676 ERCC6Q03468 1493 aa16.18■□□□□ 0.18
VPS11-208ENST00000621676 CLIP1P30622 1438 aa16.17■□□□□ 0.18
VPS11-208ENST00000621676 KIF27Q86VH2 1401 aa16.17■□□□□ 0.18
VPS11-208ENST00000621676 KANK4Q5T7N3 995 aaPredicted RBP16.15■□□□□ 0.18
VPS11-208ENST00000621676 HRCP23327 699 aa16.14■□□□□ 0.17
VPS11-208ENST00000621676 GOLGA3Q08378 1498 aa16.14■□□□□ 0.17
VPS11-208ENST00000621676 CARMIL1Q5VZK9 1371 aa16.13■□□□□ 0.17
VPS11-208ENST00000621676 TNIKQ9UKE5 1360 aa16.13■□□□□ 0.17
VPS11-208ENST00000621676 IGF1RP08069 1367 aa16.12■□□□□ 0.17
VPS11-208ENST00000621676 AQRO60306 1485 aaKnown RBP eCLIP16.12■□□□□ 0.176e-11■■■■□ 25.1
VPS11-208ENST00000621676 CEP164Q9UPV0 1460 aa16.1■□□□□ 0.17
VPS11-208ENST00000621676 PDS5BQ9NTI5 1447 aa16.08■□□□□ 0.17
VPS11-208ENST00000621676 FAM50AQ14320 339 aaKnown RBP16.04■□□□□ 0.16
VPS11-208ENST00000621676 POLA1P09884 1462 aaPredicted RBP16.04■□□□□ 0.16
VPS11-208ENST00000621676 CHMP7Q8WUX9 453 aaPredicted RBP16.04■□□□□ 0.16
VPS11-208ENST00000621676 TOP2BQ02880 1626 aa16.03■□□□□ 0.16
VPS11-208ENST00000621676 URB2Q14146 1524 aaKnown RBP16.02■□□□□ 0.16
VPS11-208ENST00000621676 TOPBP1Q92547 1522 aa16.02■□□□□ 0.16
VPS11-208ENST00000621676 EEA1Q15075 1411 aa16.01■□□□□ 0.15
VPS11-208ENST00000621676 ZNF608Q9ULD9 1512 aaPredicted RBP15.94■□□□□ 0.14
VPS11-208ENST00000621676 FHOD3Q2V2M9 1422 aa15.93■□□□□ 0.14
VPS11-208ENST00000621676 ARAP1Q96P48 1450 aa15.87■□□□□ 0.13
VPS11-208ENST00000621676 PRXQ9BXM0 1461 aa15.87■□□□□ 0.13
VPS11-208ENST00000621676 CHIC2Q9UKJ5 165 aa15.87■□□□□ 0.13
VPS11-208ENST00000621676 GAPVD1Q14C86 1478 aa15.86■□□□□ 0.13
VPS11-208ENST00000621676 KIF21AQ7Z4S6 1674 aa15.85■□□□□ 0.13
VPS11-208ENST00000621676 ZNF777Q9ULD5 760 aaPredicted RBP15.83■□□□□ 0.12
VPS11-208ENST00000621676 VPS8Q8N3P4 1428 aa15.81■□□□□ 0.12
VPS11-208ENST00000621676 KIF21BO75037 1637 aa15.8■□□□□ 0.12
VPS11-208ENST00000621676 BIVM-ERCC5R4GMW8 1640 aa15.79■□□□□ 0.12
VPS11-208ENST00000621676 LAMC3Q9Y6N6 1575 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms