RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 WDR97A6NE52 1622 aa28.09■■■□□ 2.09
PDLIM3-212ENST00000620787 CFAP43Q8NDM7 1665 aa28.08■■■□□ 2.09
PDLIM3-212ENST00000620787 PHLDB1Q86UU1 1377 aa28.05■■■□□ 2.08
PDLIM3-212ENST00000620787 CARMIL1Q5VZK9 1371 aa28■■■□□ 2.07
PDLIM3-212ENST00000620787 PCF11O94913 1555 aaKnown RBP27.98■■■□□ 2.07
PDLIM3-212ENST00000620787 SIN3AQ96ST3 1273 aa27.95■■■□□ 2.06
PDLIM3-212ENST00000620787 FHAD1B1AJZ9 1412 aa27.95■■■□□ 2.06
PDLIM3-212ENST00000620787 FGD5Q6ZNL6 1462 aa27.94■■■□□ 2.06
PDLIM3-212ENST00000620787 DDX10Q13206 875 aaKnown RBP27.92■■■□□ 2.06
PDLIM3-212ENST00000620787 PPP1R15AO75807 674 aaPredicted RBP27.89■■■□□ 2.06
PDLIM3-212ENST00000620787 FAM50AQ14320 339 aaKnown RBP27.89■■■□□ 2.06
PDLIM3-212ENST00000620787 TIMELESSQ9UNS1 1208 aa27.87■■■□□ 2.05
PDLIM3-212ENST00000620787 CADPSQ9ULU8 1353 aa27.82■■■□□ 2.04
PDLIM3-212ENST00000620787 FKBP8Q14318 412 aa27.8■■■□□ 2.04
PDLIM3-212ENST00000620787 BCANQ96GW7 911 aa27.8■■■□□ 2.04
PDLIM3-212ENST00000620787 FYCO1Q9BQS8 1478 aa27.8■■■□□ 2.04
PDLIM3-212ENST00000620787 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.78■■■□□ 2.04
PDLIM3-212ENST00000620787 ANP32EQ9BTT0 268 aa27.78■■■□□ 2.04
PDLIM3-212ENST00000620787 CCER2I3L3R5 266 aa27.75■■■□□ 2.03
PDLIM3-212ENST00000620787 FHOD3Q2V2M9 1422 aa27.75■■■□□ 2.03
PDLIM3-212ENST00000620787 EFCAB5A4FU69 1503 aa27.75■■■□□ 2.03
PDLIM3-212ENST00000620787 P3H3Q8IVL6 736 aa27.74■■■□□ 2.03
PDLIM3-212ENST00000620787 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.03
PDLIM3-212ENST00000620787 CASKIN1Q8WXD9 1431 aa27.72■■■□□ 2.03
PDLIM3-212ENST00000620787 HIRIP3Q9BW71 556 aaPredicted RBP27.7■■■□□ 2.03
PDLIM3-212ENST00000620787 CTTNBP2Q8WZ74 1663 aa27.68■■■□□ 2.02
PDLIM3-212ENST00000620787 ATP1B4Q9UN42 357 aaPredicted RBP27.67■■■□□ 2.02
PDLIM3-212ENST00000620787 ANP32CO43423 234 aa27.66■■■□□ 2.02
PDLIM3-212ENST00000620787 FGD6Q6ZV73 1430 aa27.64■■■□□ 2.02
PDLIM3-212ENST00000620787 CC2D2AQ9P2K1 1620 aa27.64■■■□□ 2.01
PDLIM3-212ENST00000620787 CCDC18Q5T9S5 1454 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 ABCA10Q8WWZ4 1543 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 CUL7Q14999 1698 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 NEFLP07196 543 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 TRIM52Q96A61 297 aa27.61■■■□□ 2.01
PDLIM3-212ENST00000620787 DNMBPQ6XZF7 1577 aa27.6■■■□□ 2.01
PDLIM3-212ENST00000620787 FANCD2Q9BXW9 1451 aa27.59■■■□□ 2.01
PDLIM3-212ENST00000620787 TONSLQ96HA7 1378 aa27.59■■■□□ 2.01
PDLIM3-212ENST00000620787 PTPN23Q9H3S7 1636 aa27.59■■■□□ 2.01
PDLIM3-212ENST00000620787 RAD54L2Q9Y4B4 1467 aa27.58■■■□□ 2.01
PDLIM3-212ENST00000620787 SNAPC4Q5SXM2 1469 aa27.57■■■□□ 2
PDLIM3-212ENST00000620787 HFM1A2PYH4 1435 aa27.56■■■□□ 2
PDLIM3-212ENST00000620787 UACAQ9BZF9 1416 aa27.56■■■□□ 2
PDLIM3-212ENST00000620787 PTPRKQ15262 1439 aa27.55■■■□□ 2
PDLIM3-212ENST00000620787 LRRIQ1Q96JM4 1722 aa27.54■■■□□ 2
PDLIM3-212ENST00000620787 FMN1Q68DA7 1419 aa27.54■■■□□ 2
PDLIM3-212ENST00000620787 POLA1P09884 1462 aaPredicted RBP27.52■■■□□ 2
PDLIM3-212ENST00000620787 TOPBP1Q92547 1522 aa27.5■■□□□ 1.99
PDLIM3-212ENST00000620787 KDM5BQ9UGL1 1544 aa27.5■■□□□ 1.99
PDLIM3-212ENST00000620787 RBM19Q9Y4C8 960 aaKnown RBP27.5■■□□□ 1.99
PDLIM3-212ENST00000620787 NAIPQ13075 1403 aa27.46■■□□□ 1.99
PDLIM3-212ENST00000620787 MTUS2Q5JR59 1369 aa27.45■■□□□ 1.99
PDLIM3-212ENST00000620787 SAMD9Q5K651 1589 aa27.45■■□□□ 1.98
PDLIM3-212ENST00000620787 NCOA2Q15596 1464 aa27.41■■□□□ 1.98
PDLIM3-212ENST00000620787 MYOM3Q5VTT5 1437 aa27.41■■□□□ 1.98
PDLIM3-212ENST00000620787 SUPT6HQ7KZ85 1726 aaKnown RBP27.4■■□□□ 1.98
PDLIM3-212ENST00000620787 GRIN2BQ13224 1484 aa27.38■■□□□ 1.97
PDLIM3-212ENST00000620787 THOC2Q8NI27 1593 aaKnown RBP27.37■■□□□ 1.97
PDLIM3-212ENST00000620787 EHBP1L1Q8N3D4 1523 aa27.34■■□□□ 1.97
PDLIM3-212ENST00000620787 GCC2Q8IWJ2 1684 aa27.31■■□□□ 1.96
PDLIM3-212ENST00000620787 UGGT2Q9NYU1 1516 aa27.3■■□□□ 1.96
PDLIM3-212ENST00000620787 HECW1Q76N89 1606 aa27.3■■□□□ 1.96
PDLIM3-212ENST00000620787 ARHGEF11O15085 1522 aa27.3■■□□□ 1.96
PDLIM3-212ENST00000620787 ABCA5Q8WWZ7 1642 aa27.29■■□□□ 1.96
PDLIM3-212ENST00000620787 HNRNPUQ00839 825 aaKnown RBP eCLIP27.28■■□□□ 1.96
PDLIM3-212ENST00000620787 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
PDLIM3-212ENST00000620787 NESP48681 1621 aa27.27■■□□□ 1.96
PDLIM3-212ENST00000620787 DENND4BO75064 1496 aaPredicted RBP27.26■■□□□ 1.95
PDLIM3-212ENST00000620787 WASHC2AQ641Q2 1341 aa27.25■■□□□ 1.95
PDLIM3-212ENST00000620787 MAGI3Q5TCQ9 1506 aa27.24■■□□□ 1.95
PDLIM3-212ENST00000620787 TCOF1Q13428 1488 aaKnown RBP27.22■■□□□ 1.95
PDLIM3-212ENST00000620787 HSPA5P11021 654 aaKnown RBP27.22■■□□□ 1.95
PDLIM3-212ENST00000620787 URB2Q14146 1524 aaKnown RBP27.2■■□□□ 1.95
PDLIM3-212ENST00000620787 MSH5O43196 834 aa27.19■■□□□ 1.94
PDLIM3-212ENST00000620787 KDM6BO15054 1643 aa27.19■■□□□ 1.94
PDLIM3-212ENST00000620787 AKNAQ7Z591 1439 aa27.16■■□□□ 1.94
PDLIM3-212ENST00000620787 CNTLNQ9NXG0 1405 aa27.16■■□□□ 1.94
PDLIM3-212ENST00000620787 IRX6P78412 446 aaPredicted RBP27.15■■□□□ 1.94
PDLIM3-212ENST00000620787 RRP7BPQ9NSQ0 103 aa27.15■■□□□ 1.94
PDLIM3-212ENST00000620787 GAPVD1Q14C86 1478 aa27.15■■□□□ 1.94
PDLIM3-212ENST00000620787 TDRD9Q8NDG6 1382 aaKnown RBP27.14■■□□□ 1.94
PDLIM3-212ENST00000620787 BCL11AQ9H165 835 aa27.13■■□□□ 1.93
PDLIM3-212ENST00000620787 LAMC3Q9Y6N6 1575 aa27.13■■□□□ 1.93
PDLIM3-212ENST00000620787 FANCIQ9NVI1 1328 aa27.12■■□□□ 1.93
PDLIM3-212ENST00000620787 EIF4G2P78344 907 aaKnown RBP eCLIP27.11■■□□□ 1.93
PDLIM3-212ENST00000620787 CHIC2Q9UKJ5 165 aa27.09■■□□□ 1.93
PDLIM3-212ENST00000620787 CDK11AQ9UQ88 783 aaPredicted RBP27.09■■□□□ 1.93
PDLIM3-212ENST00000620787 ERICH6BQ5W0A0 696 aa27.08■■□□□ 1.93
PDLIM3-212ENST00000620787 CCDC184Q52MB2 194 aa27.07■■□□□ 1.92
PDLIM3-212ENST00000620787 NCOA1Q15788 1441 aa27.06■■□□□ 1.92
PDLIM3-212ENST00000620787 POLR1AO95602 1720 aaPredicted RBP27.03■■□□□ 1.92
PDLIM3-212ENST00000620787 CCDC7Q96M83 1385 aa27.03■■□□□ 1.92
PDLIM3-212ENST00000620787 MPHOSPH9Q99550 1183 aa27.02■■□□□ 1.92
PDLIM3-212ENST00000620787 L3MBTL2Q969R5 705 aa27.01■■□□□ 1.91
PDLIM3-212ENST00000620787 MIA2Q96PC5 1412 aa27■■□□□ 1.91
PDLIM3-212ENST00000620787 C11orf95C9JLR9 678 aaPredicted RBP27■■□□□ 1.91
PDLIM3-212ENST00000620787 PPP4R2Q9NY27 417 aa27■■□□□ 1.91
PDLIM3-212ENST00000620787 EPRSP07814 1512 aaKnown RBP27■■□□□ 1.91
PDLIM3-212ENST00000620787 PRKRIP1Q9H875 184 aaPredicted RBP27■■□□□ 1.91
PDLIM3-212ENST00000620787 CDK13Q14004 1512 aaKnown RBP26.95■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms