RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 WDR97A6NE52 1622 aa28.09■■■□□ 2.09
PDLIM3-212ENST00000620787 CFAP43Q8NDM7 1665 aa28.08■■■□□ 2.09
PDLIM3-212ENST00000620787 PHLDB1Q86UU1 1377 aa28.05■■■□□ 2.08
PDLIM3-212ENST00000620787 CARMIL1Q5VZK9 1371 aa28■■■□□ 2.07
PDLIM3-212ENST00000620787 PCF11O94913 1555 aaKnown RBP27.98■■■□□ 2.07
PDLIM3-212ENST00000620787 SIN3AQ96ST3 1273 aa27.95■■■□□ 2.06
PDLIM3-212ENST00000620787 FHAD1B1AJZ9 1412 aa27.95■■■□□ 2.06
PDLIM3-212ENST00000620787 FGD5Q6ZNL6 1462 aa27.94■■■□□ 2.06
PDLIM3-212ENST00000620787 DDX10Q13206 875 aaKnown RBP27.92■■■□□ 2.06
PDLIM3-212ENST00000620787 PPP1R15AO75807 674 aaPredicted RBP27.89■■■□□ 2.06
PDLIM3-212ENST00000620787 FAM50AQ14320 339 aaKnown RBP27.89■■■□□ 2.06
PDLIM3-212ENST00000620787 TIMELESSQ9UNS1 1208 aa27.87■■■□□ 2.05
PDLIM3-212ENST00000620787 CADPSQ9ULU8 1353 aa27.82■■■□□ 2.04
PDLIM3-212ENST00000620787 FKBP8Q14318 412 aa27.8■■■□□ 2.04
PDLIM3-212ENST00000620787 BCANQ96GW7 911 aa27.8■■■□□ 2.04
PDLIM3-212ENST00000620787 FYCO1Q9BQS8 1478 aa27.8■■■□□ 2.04
PDLIM3-212ENST00000620787 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.78■■■□□ 2.04
PDLIM3-212ENST00000620787 ANP32EQ9BTT0 268 aa27.78■■■□□ 2.04
PDLIM3-212ENST00000620787 CCER2I3L3R5 266 aa27.75■■■□□ 2.03
PDLIM3-212ENST00000620787 FHOD3Q2V2M9 1422 aa27.75■■■□□ 2.03
PDLIM3-212ENST00000620787 EFCAB5A4FU69 1503 aa27.75■■■□□ 2.03
PDLIM3-212ENST00000620787 P3H3Q8IVL6 736 aa27.74■■■□□ 2.03
PDLIM3-212ENST00000620787 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.03
PDLIM3-212ENST00000620787 CASKIN1Q8WXD9 1431 aa27.72■■■□□ 2.03
PDLIM3-212ENST00000620787 HIRIP3Q9BW71 556 aaPredicted RBP27.7■■■□□ 2.03
PDLIM3-212ENST00000620787 CTTNBP2Q8WZ74 1663 aa27.68■■■□□ 2.02
PDLIM3-212ENST00000620787 ATP1B4Q9UN42 357 aaPredicted RBP27.67■■■□□ 2.02
PDLIM3-212ENST00000620787 ANP32CO43423 234 aa27.66■■■□□ 2.02
PDLIM3-212ENST00000620787 FGD6Q6ZV73 1430 aa27.64■■■□□ 2.02
PDLIM3-212ENST00000620787 CC2D2AQ9P2K1 1620 aa27.64■■■□□ 2.01
PDLIM3-212ENST00000620787 CCDC18Q5T9S5 1454 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 ABCA10Q8WWZ4 1543 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 CUL7Q14999 1698 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 NEFLP07196 543 aa27.62■■■□□ 2.01
PDLIM3-212ENST00000620787 TRIM52Q96A61 297 aa27.61■■■□□ 2.01
PDLIM3-212ENST00000620787 DNMBPQ6XZF7 1577 aa27.6■■■□□ 2.01
PDLIM3-212ENST00000620787 FANCD2Q9BXW9 1451 aa27.59■■■□□ 2.01
PDLIM3-212ENST00000620787 TONSLQ96HA7 1378 aa27.59■■■□□ 2.01
PDLIM3-212ENST00000620787 PTPN23Q9H3S7 1636 aa27.59■■■□□ 2.01
PDLIM3-212ENST00000620787 RAD54L2Q9Y4B4 1467 aa27.58■■■□□ 2.01
PDLIM3-212ENST00000620787 SNAPC4Q5SXM2 1469 aa27.57■■■□□ 2
PDLIM3-212ENST00000620787 HFM1A2PYH4 1435 aa27.56■■■□□ 2
PDLIM3-212ENST00000620787 UACAQ9BZF9 1416 aa27.56■■■□□ 2
PDLIM3-212ENST00000620787 PTPRKQ15262 1439 aa27.55■■■□□ 2
PDLIM3-212ENST00000620787 LRRIQ1Q96JM4 1722 aa27.54■■■□□ 2
PDLIM3-212ENST00000620787 FMN1Q68DA7 1419 aa27.54■■■□□ 2
PDLIM3-212ENST00000620787 POLA1P09884 1462 aaPredicted RBP27.52■■■□□ 2
PDLIM3-212ENST00000620787 TOPBP1Q92547 1522 aa27.5■■□□□ 1.99
PDLIM3-212ENST00000620787 KDM5BQ9UGL1 1544 aa27.5■■□□□ 1.99
PDLIM3-212ENST00000620787 RBM19Q9Y4C8 960 aaKnown RBP27.5■■□□□ 1.99
PDLIM3-212ENST00000620787 NAIPQ13075 1403 aa27.46■■□□□ 1.99
PDLIM3-212ENST00000620787 MTUS2Q5JR59 1369 aa27.45■■□□□ 1.99
PDLIM3-212ENST00000620787 SAMD9Q5K651 1589 aa27.45■■□□□ 1.98
PDLIM3-212ENST00000620787 NCOA2Q15596 1464 aa27.41■■□□□ 1.98
PDLIM3-212ENST00000620787 MYOM3Q5VTT5 1437 aa27.41■■□□□ 1.98
PDLIM3-212ENST00000620787 SUPT6HQ7KZ85 1726 aaKnown RBP27.4■■□□□ 1.98
PDLIM3-212ENST00000620787 GRIN2BQ13224 1484 aa27.38■■□□□ 1.97
PDLIM3-212ENST00000620787 THOC2Q8NI27 1593 aaKnown RBP27.37■■□□□ 1.97
PDLIM3-212ENST00000620787 EHBP1L1Q8N3D4 1523 aa27.34■■□□□ 1.97
PDLIM3-212ENST00000620787 GCC2Q8IWJ2 1684 aa27.31■■□□□ 1.96
PDLIM3-212ENST00000620787 UGGT2Q9NYU1 1516 aa27.3■■□□□ 1.96
PDLIM3-212ENST00000620787 HECW1Q76N89 1606 aa27.3■■□□□ 1.96
PDLIM3-212ENST00000620787 ARHGEF11O15085 1522 aa27.3■■□□□ 1.96
PDLIM3-212ENST00000620787 ABCA5Q8WWZ7 1642 aa27.29■■□□□ 1.96
PDLIM3-212ENST00000620787 HNRNPUQ00839 825 aaKnown RBP eCLIP27.28■■□□□ 1.96
PDLIM3-212ENST00000620787 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
PDLIM3-212ENST00000620787 NESP48681 1621 aa27.27■■□□□ 1.96
PDLIM3-212ENST00000620787 DENND4BO75064 1496 aaPredicted RBP27.26■■□□□ 1.95
PDLIM3-212ENST00000620787 WASHC2AQ641Q2 1341 aa27.25■■□□□ 1.95
PDLIM3-212ENST00000620787 MAGI3Q5TCQ9 1506 aa27.24■■□□□ 1.95
PDLIM3-212ENST00000620787 TCOF1Q13428 1488 aaKnown RBP27.22■■□□□ 1.95
PDLIM3-212ENST00000620787 HSPA5P11021 654 aaKnown RBP27.22■■□□□ 1.95
PDLIM3-212ENST00000620787 URB2Q14146 1524 aaKnown RBP27.2■■□□□ 1.95
PDLIM3-212ENST00000620787 MSH5O43196 834 aa27.19■■□□□ 1.94
PDLIM3-212ENST00000620787 KDM6BO15054 1643 aa27.19■■□□□ 1.94
PDLIM3-212ENST00000620787 AKNAQ7Z591 1439 aa27.16■■□□□ 1.94
PDLIM3-212ENST00000620787 CNTLNQ9NXG0 1405 aa27.16■■□□□ 1.94
PDLIM3-212ENST00000620787 IRX6P78412 446 aaPredicted RBP27.15■■□□□ 1.94
PDLIM3-212ENST00000620787 RRP7BPQ9NSQ0 103 aa27.15■■□□□ 1.94
PDLIM3-212ENST00000620787 GAPVD1Q14C86 1478 aa27.15■■□□□ 1.94
PDLIM3-212ENST00000620787 TDRD9Q8NDG6 1382 aaKnown RBP27.14■■□□□ 1.94
PDLIM3-212ENST00000620787 BCL11AQ9H165 835 aa27.13■■□□□ 1.93
PDLIM3-212ENST00000620787 LAMC3Q9Y6N6 1575 aa27.13■■□□□ 1.93
PDLIM3-212ENST00000620787 FANCIQ9NVI1 1328 aa27.12■■□□□ 1.93
PDLIM3-212ENST00000620787 EIF4G2P78344 907 aaKnown RBP eCLIP27.11■■□□□ 1.93
PDLIM3-212ENST00000620787 CHIC2Q9UKJ5 165 aa27.09■■□□□ 1.93
PDLIM3-212ENST00000620787 CDK11AQ9UQ88 783 aaPredicted RBP27.09■■□□□ 1.93
PDLIM3-212ENST00000620787 ERICH6BQ5W0A0 696 aa27.08■■□□□ 1.93
PDLIM3-212ENST00000620787 CCDC184Q52MB2 194 aa27.07■■□□□ 1.92
PDLIM3-212ENST00000620787 NCOA1Q15788 1441 aa27.06■■□□□ 1.92
PDLIM3-212ENST00000620787 POLR1AO95602 1720 aaPredicted RBP27.03■■□□□ 1.92
PDLIM3-212ENST00000620787 CCDC7Q96M83 1385 aa27.03■■□□□ 1.92
PDLIM3-212ENST00000620787 MPHOSPH9Q99550 1183 aa27.02■■□□□ 1.92
PDLIM3-212ENST00000620787 L3MBTL2Q969R5 705 aa27.01■■□□□ 1.91
PDLIM3-212ENST00000620787 MIA2Q96PC5 1412 aa27■■□□□ 1.91
PDLIM3-212ENST00000620787 C11orf95C9JLR9 678 aaPredicted RBP27■■□□□ 1.91
PDLIM3-212ENST00000620787 PPP4R2Q9NY27 417 aa27■■□□□ 1.91
PDLIM3-212ENST00000620787 EPRSP07814 1512 aaKnown RBP27■■□□□ 1.91
PDLIM3-212ENST00000620787 PRKRIP1Q9H875 184 aaPredicted RBP27■■□□□ 1.91
PDLIM3-212ENST00000620787 CDK13Q14004 1512 aaKnown RBP26.95■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms