RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RUSC2Q8N2Y8 1516 aa20.72■□□□□ 0.91
UPF3B-204ENST00000619445 IGF1RP08069 1367 aa20.7■□□□□ 0.9
UPF3B-204ENST00000619445 KIAA0586Q9BVV6 1533 aa20.67■□□□□ 0.9
UPF3B-204ENST00000619445 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
UPF3B-204ENST00000619445 NPM1P06748 294 aaKnown RBP eCLIP20.58■□□□□ 0.88
UPF3B-204ENST00000619445 MAPKBP1O60336 1514 aa20.51■□□□□ 0.87
UPF3B-204ENST00000619445 CARMIL2Q6F5E8 1435 aa20.5■□□□□ 0.87
UPF3B-204ENST00000619445 KIF13AQ9H1H9 1805 aa20.5■□□□□ 0.87
UPF3B-204ENST00000619445 IQGAP2Q13576 1575 aa20.47■□□□□ 0.87
UPF3B-204ENST00000619445 ADCY10Q96PN6 1610 aa20.47■□□□□ 0.87
UPF3B-204ENST00000619445 ABCC10Q5T3U5 1492 aa20.46■□□□□ 0.87
UPF3B-204ENST00000619445 PTPRGP23470 1445 aa20.45■□□□□ 0.86
UPF3B-204ENST00000619445 TNIKQ9UKE5 1360 aa20.43■□□□□ 0.86
UPF3B-204ENST00000619445 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
UPF3B-204ENST00000619445 FAM69CQ0P6D2 419 aa20.4■□□□□ 0.86
UPF3B-204ENST00000619445 DIP2BQ9P265 1576 aa20.38■□□□□ 0.85
UPF3B-204ENST00000619445 AEBP2Q6ZN18 517 aaPredicted RBP20.34■□□□□ 0.85
UPF3B-204ENST00000619445 ABCC2Q92887 1545 aa20.34■□□□□ 0.85
UPF3B-204ENST00000619445 UGGT2Q9NYU1 1516 aa20.34■□□□□ 0.85
UPF3B-204ENST00000619445 UHRF1BP1LA0JNW5 1464 aa20.33■□□□□ 0.84
UPF3B-204ENST00000619445 DISP1Q96F81 1524 aa20.31■□□□□ 0.84
UPF3B-204ENST00000619445 UACAQ9BZF9 1416 aa20.29■□□□□ 0.84
UPF3B-204ENST00000619445 PLB1Q6P1J6 1458 aa20.29■□□□□ 0.84
UPF3B-204ENST00000619445 TTBK1Q5TCY1 1321 aaPredicted RBP20.27■□□□□ 0.84
UPF3B-204ENST00000619445 CTTNBP2Q8WZ74 1663 aa20.26■□□□□ 0.83
UPF3B-204ENST00000619445 KIAA0556O60303 1618 aa20.26■□□□□ 0.83
UPF3B-204ENST00000619445 GOLGA3Q08378 1498 aa20.24■□□□□ 0.83
UPF3B-204ENST00000619445 ASXL2Q76L83 1435 aa20.23■□□□□ 0.83
UPF3B-204ENST00000619445 GLI2P10070 1586 aa20.22■□□□□ 0.83
UPF3B-204ENST00000619445 KDM6BO15054 1643 aa20.21■□□□□ 0.83
UPF3B-204ENST00000619445 KDM5BQ9UGL1 1544 aa20.21■□□□□ 0.83
UPF3B-204ENST00000619445 TSPOAP1O95153 1857 aa20.21■□□□□ 0.83
UPF3B-204ENST00000619445 PRXQ9BXM0 1461 aa20.21■□□□□ 0.83
UPF3B-204ENST00000619445 FAM9AQ8IZU1 332 aaPredicted RBP20.17■□□□□ 0.82
UPF3B-204ENST00000619445 ZCCHC11Q5TAX3 1644 aaKnown RBP20.14■□□□□ 0.81
UPF3B-204ENST00000619445 EPRSP07814 1512 aaKnown RBP20.11■□□□□ 0.81
UPF3B-204ENST00000619445 EEA1Q15075 1411 aa20.1■□□□□ 0.81
UPF3B-204ENST00000619445 TEX14Q8IWB6 1497 aa20.09■□□□□ 0.81
UPF3B-204ENST00000619445 CSRNP3Q8WYN3 585 aa20.08■□□□□ 0.8
UPF3B-204ENST00000619445 MAP3K4Q9Y6R4 1608 aa20.07■□□□□ 0.8
UPF3B-204ENST00000619445 WDR7Q9Y4E6 1490 aa20.07■□□□□ 0.8
UPF3B-204ENST00000619445 PPRC1Q5VV67 1664 aaKnown RBP20.07■□□□□ 0.8
UPF3B-204ENST00000619445 ABCA8O94911 1581 aa20.06■□□□□ 0.8
UPF3B-204ENST00000619445 CFAP43Q8NDM7 1665 aa19.98■□□□□ 0.79
UPF3B-204ENST00000619445 CHIC1Q5VXU3 224 aa19.97■□□□□ 0.79
UPF3B-204ENST00000619445 SAMD9Q5K651 1589 aa19.96■□□□□ 0.79
UPF3B-204ENST00000619445 MAGI3Q5TCQ9 1506 aa19.95■□□□□ 0.78
UPF3B-204ENST00000619445 CD109Q6YHK3 1445 aa19.94■□□□□ 0.78
UPF3B-204ENST00000619445 KCNH8Q96L42 1107 aa19.9■□□□□ 0.78
UPF3B-204ENST00000619445 KDM4FA0A1W2PPD8 638 aa19.89■□□□□ 0.77
UPF3B-204ENST00000619445 P3H3Q8IVL6 736 aa19.89■□□□□ 0.77
UPF3B-204ENST00000619445 COL17A1Q9UMD9 1497 aaPredicted RBP19.89■□□□□ 0.77
UPF3B-204ENST00000619445 ATP10BO94823 1461 aa19.88■□□□□ 0.77
UPF3B-204ENST00000619445 RAPGEF6Q8TEU7 1601 aa19.88■□□□□ 0.77
UPF3B-204ENST00000619445 KIF21BO75037 1637 aa19.86■□□□□ 0.77
UPF3B-204ENST00000619445 PHLDB1Q86UU1 1377 aa19.85■□□□□ 0.77
UPF3B-204ENST00000619445 EFCAB5A4FU69 1503 aa19.84■□□□□ 0.77
UPF3B-204ENST00000619445 ABCA9Q8IUA7 1624 aa19.81■□□□□ 0.76
UPF3B-204ENST00000619445 ADGRL1O94910 1474 aa19.81■□□□□ 0.76
UPF3B-204ENST00000619445 ARAP3Q8WWN8 1544 aa19.79■□□□□ 0.76
UPF3B-204ENST00000619445 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.78■□□□□ 0.76
UPF3B-204ENST00000619445 HNRNPUL2Q1KMD3 747 aaKnown RBP19.78■□□□□ 0.76
UPF3B-204ENST00000619445 ARID3CA6NKF2 412 aa19.77■□□□□ 0.76
UPF3B-204ENST00000619445 NUP153P49790 1475 aaKnown RBP19.77■□□□□ 0.75
UPF3B-204ENST00000619445 FHOD3Q2V2M9 1422 aa19.76■□□□□ 0.75
UPF3B-204ENST00000619445 NEO1Q92859 1461 aa19.74■□□□□ 0.75
UPF3B-204ENST00000619445 RANGAP1P46060 587 aaPredicted RBP19.73■□□□□ 0.75
UPF3B-204ENST00000619445 PLEKHD1A6NEE1 506 aa19.72■□□□□ 0.75
UPF3B-204ENST00000619445 UBTFP17480 764 aaKnown RBP19.69■□□□□ 0.74
UPF3B-204ENST00000619445 FMN1Q68DA7 1419 aa19.66■□□□□ 0.74
UPF3B-204ENST00000619445 CFAP74Q9C0B2 1584 aa19.65■□□□□ 0.74
UPF3B-204ENST00000619445 HECW1Q76N89 1606 aa19.6■□□□□ 0.73
UPF3B-204ENST00000619445 CDK11AQ9UQ88 783 aaPredicted RBP19.59■□□□□ 0.73
UPF3B-204ENST00000619445 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.58■□□□□ 0.73
UPF3B-204ENST00000619445 RAPGEF3O95398 923 aa19.57■□□□□ 0.72
UPF3B-204ENST00000619445 FANCAO15360 1455 aa19.57■□□□□ 0.72
UPF3B-204ENST00000619445 DENND4BO75064 1496 aaPredicted RBP19.57■□□□□ 0.72
UPF3B-204ENST00000619445 ARHGAP35Q9NRY4 1499 aa19.57■□□□□ 0.72
UPF3B-204ENST00000619445 AKNAQ7Z591 1439 aa19.56■□□□□ 0.72
UPF3B-204ENST00000619445 CDK13Q14004 1512 aaKnown RBP19.54■□□□□ 0.72
UPF3B-204ENST00000619445 FRMPD1Q5SYB0 1578 aa19.54■□□□□ 0.72
UPF3B-204ENST00000619445 TTC37Q6PGP7 1564 aa19.54■□□□□ 0.72
UPF3B-204ENST00000619445 RICTORQ6R327 1708 aa19.53■□□□□ 0.72
UPF3B-204ENST00000619445 ATP1B4Q9UN42 357 aaPredicted RBP19.51■□□□□ 0.71
UPF3B-204ENST00000619445 ARHGEF40Q8TER5 1519 aa19.51■□□□□ 0.71
UPF3B-204ENST00000619445 HECW2Q9P2P5 1572 aa19.5■□□□□ 0.71
UPF3B-204ENST00000619445 EHMT2Q96KQ7 1210 aa19.5■□□□□ 0.71
UPF3B-204ENST00000619445 PLCH2O75038 1416 aa19.5■□□□□ 0.71
UPF3B-204ENST00000619445 ADAMTSL3P82987 1691 aa19.5■□□□□ 0.71
UPF3B-204ENST00000619445 MAGI2Q86UL8 1455 aa19.49■□□□□ 0.71
UPF3B-204ENST00000619445 ZMYM4Q5VZL5 1548 aa19.49■□□□□ 0.71
UPF3B-204ENST00000619445 CLIP1P30622 1438 aa19.48■□□□□ 0.71
UPF3B-204ENST00000619445 BCORL1Q5H9F3 1711 aa19.47■□□□□ 0.71
UPF3B-204ENST00000619445 MYO5CQ9NQX4 1742 aa19.47■□□□□ 0.71
UPF3B-204ENST00000619445 ARID4BQ4LE39 1312 aaPredicted RBP19.47■□□□□ 0.71
UPF3B-204ENST00000619445 KIF14Q15058 1648 aa19.46■□□□□ 0.71
UPF3B-204ENST00000619445 TROQ12816 1431 aaPredicted RBP19.46■□□□□ 0.71
UPF3B-204ENST00000619445 POGZQ7Z3K3 1410 aa19.46■□□□□ 0.71
UPF3B-204ENST00000619445 EFCAB2Q5VUJ9 269 aa19.45■□□□□ 0.7
UPF3B-204ENST00000619445 PTPRMP28827 1452 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms