RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 NISCHQ9Y2I1 1504 aa29.65■■■□□ 2.34
UPF3B-204ENST00000619445 CCDC180Q9P1Z9 1646 aa26.66■■□□□ 1.86
UPF3B-204ENST00000619445 ABCC9O60706 1549 aa26.41■■□□□ 1.82
UPF3B-204ENST00000619445 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
UPF3B-204ENST00000619445 NACADO15069 1562 aa25.18■■□□□ 1.62
UPF3B-204ENST00000619445 DCAF8L2P0C7V8 631 aa24.92■■□□□ 1.58
UPF3B-204ENST00000619445 MYO15BQ96JP2 1530 aa24.91■■□□□ 1.58
UPF3B-204ENST00000619445 UNC13AQ9UPW8 1703 aa24.65■■□□□ 1.54
UPF3B-204ENST00000619445 DNAJC5BQ9UF47 199 aa24.61■■□□□ 1.53
UPF3B-204ENST00000619445 ZCCHC6Q5VYS8 1495 aaKnown RBP24.6■■□□□ 1.53
UPF3B-204ENST00000619445 DCAF1Q9Y4B6 1507 aa24.59■■□□□ 1.53
UPF3B-204ENST00000619445 PABPN1Q86U42 306 aaKnown RBP eCLIP24.56■■□□□ 1.52
UPF3B-204ENST00000619445 BICRAQ9NZM4 1560 aa24.46■■□□□ 1.51
UPF3B-204ENST00000619445 SHROOM4Q9ULL8 1493 aa24.35■■□□□ 1.49
UPF3B-204ENST00000619445 SCRIBQ14160 1630 aa24.16■■□□□ 1.46
UPF3B-204ENST00000619445 CC2D2AQ9P2K1 1620 aa23.91■■□□□ 1.42
UPF3B-204ENST00000619445 EIF4G1Q04637 1599 aaKnown RBP23.9■■□□□ 1.42
UPF3B-204ENST00000619445 CECR2Q9BXF3 1484 aa23.85■■□□□ 1.41
UPF3B-204ENST00000619445 NCAPD3P42695 1498 aa23.2■■□□□ 1.31
UPF3B-204ENST00000619445 SMARCA2P51531 1590 aa23.13■■□□□ 1.29
UPF3B-204ENST00000619445 SMARCA4P51532 1647 aa23.11■■□□□ 1.29
UPF3B-204ENST00000619445 ATAD2BQ9ULI0 1458 aa23.1■■□□□ 1.29
UPF3B-204ENST00000619445 BAZ1AQ9NRL2 1556 aaPredicted RBP23.07■■□□□ 1.28
UPF3B-204ENST00000619445 HMGXB3Q12766 1538 aa23.06■■□□□ 1.28
UPF3B-204ENST00000619445 PEG3Q9GZU2 1588 aa22.94■■□□□ 1.26
UPF3B-204ENST00000619445 BAZ1BQ9UIG0 1483 aaKnown RBP22.92■■□□□ 1.26
UPF3B-204ENST00000619445 ERCC6Q03468 1493 aa22.89■■□□□ 1.26
UPF3B-204ENST00000619445 CUX2O14529 1486 aa22.86■■□□□ 1.25
UPF3B-204ENST00000619445 MROH2BQ7Z745 1585 aa22.79■■□□□ 1.24
UPF3B-204ENST00000619445 LAMC3Q9Y6N6 1575 aa22.7■■□□□ 1.22
UPF3B-204ENST00000619445 NESP48681 1621 aa22.69■■□□□ 1.22
UPF3B-204ENST00000619445 DNAJC5Q9H3Z4 198 aa22.68■■□□□ 1.22
UPF3B-204ENST00000619445 PDS5BQ9NTI5 1447 aa22.58■■□□□ 1.2
UPF3B-204ENST00000619445 WIZO95785 1651 aa22.52■■□□□ 1.2
UPF3B-204ENST00000619445 THOC2Q8NI27 1593 aaKnown RBP22.51■■□□□ 1.19
UPF3B-204ENST00000619445 CADPSQ9ULU8 1353 aa22.49■■□□□ 1.19
UPF3B-204ENST00000619445 KIF21AQ7Z4S6 1674 aa22.45■■□□□ 1.18
UPF3B-204ENST00000619445 RSF1Q96T23 1441 aaPredicted RBP22.38■■□□□ 1.17
UPF3B-204ENST00000619445 MRC2Q9UBG0 1479 aa22.32■■□□□ 1.16
UPF3B-204ENST00000619445 TOP2AP11388 1531 aaKnown RBP22.31■■□□□ 1.16
UPF3B-204ENST00000619445 CEP164Q9UPV0 1460 aa22.26■■□□□ 1.15
UPF3B-204ENST00000619445 WDR62O43379 1518 aa22.26■■□□□ 1.15
UPF3B-204ENST00000619445 CFTRP13569 1480 aa22.25■■□□□ 1.15
UPF3B-204ENST00000619445 FANCD2Q9BXW9 1451 aa22.22■■□□□ 1.15
UPF3B-204ENST00000619445 PRDM2Q13029 1718 aa22.09■■□□□ 1.13
UPF3B-204ENST00000619445 CCDC88BA6NC98 1476 aa22.01■■□□□ 1.11
UPF3B-204ENST00000619445 URB2Q14146 1524 aaKnown RBP21.98■■□□□ 1.11
UPF3B-204ENST00000619445 ABCC8Q09428 1581 aa21.88■■□□□ 1.09
UPF3B-204ENST00000619445 IFT140Q96RY7 1462 aa21.83■■□□□ 1.08
UPF3B-204ENST00000619445 TOPBP1Q92547 1522 aa21.8■■□□□ 1.08
UPF3B-204ENST00000619445 OSCARQ8IYS5 282 aa21.8■■□□□ 1.08
UPF3B-204ENST00000619445 DNMBPQ6XZF7 1577 aa21.76■■□□□ 1.07
UPF3B-204ENST00000619445 ZNF608Q9ULD9 1512 aaPredicted RBP21.67■■□□□ 1.06
UPF3B-204ENST00000619445 TRIM41Q8WV44 630 aa21.64■■□□□ 1.06
UPF3B-204ENST00000619445 EIF4G3O43432 1585 aaKnown RBP21.61■■□□□ 1.05
UPF3B-204ENST00000619445 TARBP1Q13395 1621 aaKnown RBP21.59■■□□□ 1.05
UPF3B-204ENST00000619445 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.04
UPF3B-204ENST00000619445 WDR97A6NE52 1622 aa21.52■■□□□ 1.04
UPF3B-204ENST00000619445 AQRO60306 1485 aaKnown RBP eCLIP21.5■■□□□ 1.035e-10■■■■■ 36.7
UPF3B-204ENST00000619445 SOGA1O94964 1423 aa21.5■■□□□ 1.03
UPF3B-204ENST00000619445 RIMBP3CA6NJZ7 1639 aa21.45■■□□□ 1.02
UPF3B-204ENST00000619445 RIMBP3BA6NNM3 1639 aa21.45■■□□□ 1.02
UPF3B-204ENST00000619445 RIMBP3Q9UFD9 1639 aa21.45■■□□□ 1.02
UPF3B-204ENST00000619445 FGD5Q6ZNL6 1462 aa21.44■■□□□ 1.02
UPF3B-204ENST00000619445 RAD54L2Q9Y4B4 1467 aa21.43■■□□□ 1.02
UPF3B-204ENST00000619445 CHD1O14646 1710 aa21.43■■□□□ 1.02
UPF3B-204ENST00000619445 CUX1P39880 1505 aa21.42■■□□□ 1.02
UPF3B-204ENST00000619445 ARHGEF11O15085 1522 aa21.41■■□□□ 1.02
UPF3B-204ENST00000619445 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.02
UPF3B-204ENST00000619445 TDRD9Q8NDG6 1382 aaKnown RBP21.38■■□□□ 1.01
UPF3B-204ENST00000619445 FBLN2P98095 1184 aa21.36■■□□□ 1.01
UPF3B-204ENST00000619445 MAGI1Q96QZ7 1491 aaPredicted RBP21.35■■□□□ 1.01
UPF3B-204ENST00000619445 GRIN2BQ13224 1484 aa21.34■■□□□ 1.01
UPF3B-204ENST00000619445 SNAPC4Q5SXM2 1469 aa21.31■■□□□ 1
UPF3B-204ENST00000619445 CHMP7Q8WUX9 453 aaPredicted RBP21.28■■□□□ 1
UPF3B-204ENST00000619445 SYNJ1O43426 1573 aa21.26■□□□□ 0.99
UPF3B-204ENST00000619445 ABCA10Q8WWZ4 1543 aa21.26■□□□□ 0.99
UPF3B-204ENST00000619445 SYNJ2O15056 1496 aa21.25■□□□□ 0.99
UPF3B-204ENST00000619445 GAPVD1Q14C86 1478 aa21.25■□□□□ 0.99
UPF3B-204ENST00000619445 PBRM1Q86U86 1689 aa21.22■□□□□ 0.99
UPF3B-204ENST00000619445 CYB5RLQ6IPT4 315 aa21.22■□□□□ 0.99
UPF3B-204ENST00000619445 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
UPF3B-204ENST00000619445 CLASP1Q7Z460 1538 aa21.2■□□□□ 0.98
UPF3B-204ENST00000619445 ABCA5Q8WWZ7 1642 aa21.19■□□□□ 0.98
UPF3B-204ENST00000619445 ARAP1Q96P48 1450 aa21.18■□□□□ 0.98
UPF3B-204ENST00000619445 TOP2BQ02880 1626 aa21.16■□□□□ 0.98
UPF3B-204ENST00000619445 BIVM-ERCC5R4GMW8 1640 aa21.16■□□□□ 0.98
UPF3B-204ENST00000619445 GRIN2AQ12879 1464 aa21.03■□□□□ 0.96
UPF3B-204ENST00000619445 ADAMTS12P58397 1594 aa21.02■□□□□ 0.96
UPF3B-204ENST00000619445 ERICH3Q5RHP9 1530 aa21.02■□□□□ 0.96
UPF3B-204ENST00000619445 FHAD1B1AJZ9 1412 aa21.01■□□□□ 0.95
UPF3B-204ENST00000619445 TRHP20396 242 aaPredicted RBP20.97■□□□□ 0.95
UPF3B-204ENST00000619445 NUP160Q12769 1436 aa20.97■□□□□ 0.95
UPF3B-204ENST00000619445 CEP170Q5SW79 1584 aa20.91■□□□□ 0.94
UPF3B-204ENST00000619445 SHROOM2Q13796 1616 aa20.87■□□□□ 0.93
UPF3B-204ENST00000619445 KIF27Q86VH2 1401 aa20.78■□□□□ 0.92
UPF3B-204ENST00000619445 ERCC6L2Q5T890 1561 aa20.78■□□□□ 0.92
UPF3B-204ENST00000619445 CUL7Q14999 1698 aa20.74■□□□□ 0.91
UPF3B-204ENST00000619445 JPH4Q96JJ6 628 aa20.73■□□□□ 0.91
UPF3B-204ENST00000619445 PRG4Q92954 1404 aaPredicted RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms