RNA–Protein interactions for RNA: ENST00000610623.4

TP53-220, Transcript of tumor protein p53, humanhuman

TSL 1 (best) BASIC

Gene TP53, Length 2,331 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TP53-220ENST00000610623 SUPT16HQ9Y5B9 1047 aaKnown RBP17.49■□□□□ 0.39
TP53-220ENST00000610623 KIF27Q86VH2 1401 aa17.46■□□□□ 0.39
TP53-220ENST00000610623 RAPGEF2Q9Y4G8 1499 aa17.45■□□□□ 0.38
TP53-220ENST00000610623 PRXQ9BXM0 1461 aa17.43■□□□□ 0.38
TP53-220ENST00000610623 TSHZ2Q9NRE2 1034 aa17.43■□□□□ 0.38
TP53-220ENST00000610623 RNF216Q9NWF9 866 aaPredicted RBP17.43■□□□□ 0.38
TP53-220ENST00000610623 FANCD2Q9BXW9 1451 aa17.4■□□□□ 0.38
TP53-220ENST00000610623 SLC4A2P04920 1241 aa17.39■□□□□ 0.38
TP53-220ENST00000610623 CLIP1P30622 1438 aa17.39■□□□□ 0.38
TP53-220ENST00000610623 LAMC3Q9Y6N6 1575 aa17.39■□□□□ 0.37
TP53-220ENST00000610623 DNMBPQ6XZF7 1577 aa17.36■□□□□ 0.37
TP53-220ENST00000610623 FGD5Q6ZNL6 1462 aa17.35■□□□□ 0.37
TP53-220ENST00000610623 VPS8Q8N3P4 1428 aa17.32■□□□□ 0.36
TP53-220ENST00000610623 CUX2O14529 1486 aa17.31■□□□□ 0.36
TP53-220ENST00000610623 NESP48681 1621 aa17.28■□□□□ 0.36
TP53-220ENST00000610623 TOPBP1Q92547 1522 aa17.27■□□□□ 0.35
TP53-220ENST00000610623 IGF1RP08069 1367 aa17.22■□□□□ 0.35
TP53-220ENST00000610623 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
TP53-220ENST00000610623 HNRNPUL2Q1KMD3 747 aaKnown RBP17.22■□□□□ 0.35
TP53-220ENST00000610623 PDS5BQ9NTI5 1447 aa17.21■□□□□ 0.35
TP53-220ENST00000610623 POLA1P09884 1462 aaPredicted RBP17.2■□□□□ 0.34
TP53-220ENST00000610623 PRKCSHP14314 528 aaPredicted RBP17.19■□□□□ 0.34
TP53-220ENST00000610623 ARAP1Q96P48 1450 aa17.18■□□□□ 0.34
TP53-220ENST00000610623 WDR97A6NE52 1622 aa17.17■□□□□ 0.34
TP53-220ENST00000610623 CARMIL1Q5VZK9 1371 aa17.16■□□□□ 0.34
TP53-220ENST00000610623 URB2Q14146 1524 aaKnown RBP17.16■□□□□ 0.34
TP53-220ENST00000610623 CUL7Q14999 1698 aa17.15■□□□□ 0.34
TP53-220ENST00000610623 KIF21AQ7Z4S6 1674 aa17.14■□□□□ 0.33
TP53-220ENST00000610623 ATXN8OSP0DMR3 200 aa17.14■□□□□ 0.33
TP53-220ENST00000610623 APLP2Q06481 763 aa17.14■□□□□ 0.33
TP53-220ENST00000610623 RAD54L2Q9Y4B4 1467 aa17.13■□□□□ 0.33
TP53-220ENST00000610623 MSH5O43196 834 aa17.1■□□□□ 0.33
TP53-220ENST00000610623 MYCNP04198 464 aaPredicted RBP17.1■□□□□ 0.33
TP53-220ENST00000610623 ARHGAP35Q9NRY4 1499 aa17.1■□□□□ 0.33
TP53-220ENST00000610623 RANGAP1P46060 587 aaPredicted RBP17.07■□□□□ 0.32
TP53-220ENST00000610623 ABCA5Q8WWZ7 1642 aa17.07■□□□□ 0.32
TP53-220ENST00000610623 DHX57Q6P158 1386 aaKnown RBP17.05■□□□□ 0.32
TP53-220ENST00000610623 HOXD11P31277 338 aaPredicted RBP17.04■□□□□ 0.32
TP53-220ENST00000610623 PLCB2Q00722 1185 aa17.04■□□□□ 0.32
TP53-220ENST00000610623 RBM19Q9Y4C8 960 aaKnown RBP17.03■□□□□ 0.32
TP53-220ENST00000610623 CTTNBP2Q8WZ74 1663 aa17.03■□□□□ 0.32
TP53-220ENST00000610623 TARBP1Q13395 1621 aaKnown RBP17■□□□□ 0.31
TP53-220ENST00000610623 EFCAB5A4FU69 1503 aa16.99■□□□□ 0.31
TP53-220ENST00000610623 MAP3K1Q13233 1512 aa16.98■□□□□ 0.31
TP53-220ENST00000610623 MRC2Q9UBG0 1479 aa16.98■□□□□ 0.31
TP53-220ENST00000610623 GAPVD1Q14C86 1478 aa16.98■□□□□ 0.31
TP53-220ENST00000610623 BCANQ96GW7 911 aa16.94■□□□□ 0.3
TP53-220ENST00000610623 FHAD1B1AJZ9 1412 aa16.94■□□□□ 0.3
TP53-220ENST00000610623 NEFLP07196 543 aa16.92■□□□□ 0.3
TP53-220ENST00000610623 PBRM1Q86U86 1689 aa16.91■□□□□ 0.3
TP53-220ENST00000610623 TIAM1Q13009 1591 aa16.91■□□□□ 0.3
TP53-220ENST00000610623 TDRD9Q8NDG6 1382 aaKnown RBP16.9■□□□□ 0.3
TP53-220ENST00000610623 TAOK2Q9UL54 1235 aa16.9■□□□□ 0.3
TP53-220ENST00000610623 DMRT2Q9Y5R5 561 aa16.9■□□□□ 0.3
TP53-220ENST00000610623 CFAP43Q8NDM7 1665 aa16.89■□□□□ 0.29
TP53-220ENST00000610623 WDR62O43379 1518 aa16.88■□□□□ 0.29
TP53-220ENST00000610623 RRBP1Q9P2E9 1410 aaKnown RBP16.87■□□□□ 0.29
TP53-220ENST00000610623 MYT1LQ9UL68 1186 aa16.87■□□□□ 0.29
TP53-220ENST00000610623 AQRO60306 1485 aaKnown RBP eCLIP16.87■□□□□ 0.298e-7■■■□□ 16.1
TP53-220ENST00000610623 KCNH8Q96L42 1107 aa16.86■□□□□ 0.29
TP53-220ENST00000610623 PCF11O94913 1555 aaKnown RBP16.86■□□□□ 0.29
TP53-220ENST00000610623 KANK4Q5T7N3 995 aaPredicted RBP16.86■□□□□ 0.29
TP53-220ENST00000610623 FANCIQ9NVI1 1328 aa16.85■□□□□ 0.29
TP53-220ENST00000610623 ATF5Q9Y2D1 282 aaPredicted RBP16.85■□□□□ 0.29
TP53-220ENST00000610623 FYCO1Q9BQS8 1478 aa16.85■□□□□ 0.29
TP53-220ENST00000610623 SAMD9Q5K651 1589 aa16.84■□□□□ 0.29
TP53-220ENST00000610623 IFT140Q96RY7 1462 aa16.83■□□□□ 0.29
TP53-220ENST00000610623 ADAMTS12P58397 1594 aa16.82■□□□□ 0.28
TP53-220ENST00000610623 HAP1P54257 671 aaPredicted RBP16.81■□□□□ 0.28
TP53-220ENST00000610623 CASKIN1Q8WXD9 1431 aa16.81■□□□□ 0.28
TP53-220ENST00000610623 LRRC9Q6ZRR7 1453 aa16.8■□□□□ 0.28
TP53-220ENST00000610623 FHOD3Q2V2M9 1422 aa16.8■□□□□ 0.28
TP53-220ENST00000610623 FMN1Q68DA7 1419 aa16.8■□□□□ 0.28
TP53-220ENST00000610623 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
TP53-220ENST00000610623 CCNB3Q8WWL7 1395 aa16.77■□□□□ 0.27
TP53-220ENST00000610623 CCER2I3L3R5 266 aa16.76■□□□□ 0.27
TP53-220ENST00000610623 ERICH6Q7L0X2 663 aa16.75■□□□□ 0.27
TP53-220ENST00000610623 THOC2Q8NI27 1593 aaKnown RBP16.75■□□□□ 0.27
TP53-220ENST00000610623 ERCC6Q03468 1493 aa16.73■□□□□ 0.27
TP53-220ENST00000610623 SNAPC4Q5SXM2 1469 aa16.73■□□□□ 0.27
TP53-220ENST00000610623 P3H3Q8IVL6 736 aa16.73■□□□□ 0.27
TP53-220ENST00000610623 IQGAP2Q13576 1575 aa16.72■□□□□ 0.27
TP53-220ENST00000610623 ITGAEP38570 1179 aa16.71■□□□□ 0.27
TP53-220ENST00000610623 EIF4G3O43432 1585 aaKnown RBP16.69■□□□□ 0.26
TP53-220ENST00000610623 DDX10Q13206 875 aaKnown RBP16.68■□□□□ 0.26
TP53-220ENST00000610623 CDK11AQ9UQ88 783 aaPredicted RBP16.68■□□□□ 0.26
TP53-220ENST00000610623 PPP1R15AO75807 674 aaPredicted RBP16.68■□□□□ 0.26
TP53-220ENST00000610623 ZNF608Q9ULD9 1512 aaPredicted RBP16.68■□□□□ 0.26
TP53-220ENST00000610623 MAPKBP1O60336 1514 aa16.64■□□□□ 0.25
TP53-220ENST00000610623 UGGT2Q9NYU1 1516 aa16.64■□□□□ 0.25
TP53-220ENST00000610623 LRRIQ1Q96JM4 1722 aa16.64■□□□□ 0.25
TP53-220ENST00000610623 PHLDB1Q86UU1 1377 aa16.63■□□□□ 0.25
TP53-220ENST00000610623 TPRNQ4KMQ1 711 aa16.63■□□□□ 0.25
TP53-220ENST00000610623 TRIM52Q96A61 297 aa16.63■□□□□ 0.25
TP53-220ENST00000610623 ANP32CO43423 234 aa16.62■□□□□ 0.25
TP53-220ENST00000610623 ATP1B4Q9UN42 357 aaPredicted RBP16.62■□□□□ 0.25
TP53-220ENST00000610623 TIMELESSQ9UNS1 1208 aa16.62■□□□□ 0.25
TP53-220ENST00000610623 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.62■□□□□ 0.25
TP53-220ENST00000610623 CCDC18Q5T9S5 1454 aa16.61■□□□□ 0.25
TP53-220ENST00000610623 MAGI1Q96QZ7 1491 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms