RNA–Protein interactions for RNA: ENST00000606782.1

CTSA-213, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-213ENST00000606782 RUSC2Q8N2Y8 1516 aa23.13■■□□□ 1.29
CTSA-213ENST00000606782 CUL7Q14999 1698 aa23.13■■□□□ 1.29
CTSA-213ENST00000606782 KIAA0586Q9BVV6 1533 aa23.1■■□□□ 1.29
CTSA-213ENST00000606782 CARMIL1Q5VZK9 1371 aa23.06■■□□□ 1.28
CTSA-213ENST00000606782 RAPGEF2Q9Y4G8 1499 aa22.86■■□□□ 1.25
CTSA-213ENST00000606782 ADCY10Q96PN6 1610 aa22.85■■□□□ 1.25
CTSA-213ENST00000606782 IQGAP2Q13576 1575 aa22.84■■□□□ 1.25
CTSA-213ENST00000606782 NPM1P06748 294 aaKnown RBP eCLIP22.84■■□□□ 1.25
CTSA-213ENST00000606782 CARMIL2Q6F5E8 1435 aa22.83■■□□□ 1.25
CTSA-213ENST00000606782 MAPKBP1O60336 1514 aa22.83■■□□□ 1.25
CTSA-213ENST00000606782 PTPRGP23470 1445 aa22.82■■□□□ 1.24
CTSA-213ENST00000606782 TNIKQ9UKE5 1360 aa22.81■■□□□ 1.24
CTSA-213ENST00000606782 KIF13AQ9H1H9 1805 aa22.8■■□□□ 1.24
CTSA-213ENST00000606782 ABCC10Q5T3U5 1492 aa22.79■■□□□ 1.24
CTSA-213ENST00000606782 DISP1Q96F81 1524 aa22.76■■□□□ 1.23
CTSA-213ENST00000606782 UGGT2Q9NYU1 1516 aa22.76■■□□□ 1.23
CTSA-213ENST00000606782 FAM69CQ0P6D2 419 aa22.72■■□□□ 1.23
CTSA-213ENST00000606782 PRXQ9BXM0 1461 aa22.71■■□□□ 1.23
CTSA-213ENST00000606782 UHRF1BP1LA0JNW5 1464 aa22.7■■□□□ 1.22
CTSA-213ENST00000606782 DIP2BQ9P265 1576 aa22.7■■□□□ 1.22
CTSA-213ENST00000606782 ABCC2Q92887 1545 aa22.69■■□□□ 1.22
CTSA-213ENST00000606782 UACAQ9BZF9 1416 aa22.66■■□□□ 1.22
CTSA-213ENST00000606782 KIAA0556O60303 1618 aa22.64■■□□□ 1.21
CTSA-213ENST00000606782 TTBK1Q5TCY1 1321 aaPredicted RBP22.63■■□□□ 1.21
CTSA-213ENST00000606782 CTTNBP2Q8WZ74 1663 aa22.61■■□□□ 1.21
CTSA-213ENST00000606782 PLB1Q6P1J6 1458 aa22.59■■□□□ 1.21
CTSA-213ENST00000606782 KDM5BQ9UGL1 1544 aa22.58■■□□□ 1.21
CTSA-213ENST00000606782 ASXL2Q76L83 1435 aa22.57■■□□□ 1.2
CTSA-213ENST00000606782 GOLGA3Q08378 1498 aa22.57■■□□□ 1.2
CTSA-213ENST00000606782 CSRNP3Q8WYN3 585 aa22.55■■□□□ 1.2
CTSA-213ENST00000606782 GLI2P10070 1586 aa22.53■■□□□ 1.2
CTSA-213ENST00000606782 EEA1Q15075 1411 aa22.51■■□□□ 1.19
CTSA-213ENST00000606782 ZCCHC11Q5TAX3 1644 aaKnown RBP22.46■■□□□ 1.19
CTSA-213ENST00000606782 ABCA8O94911 1581 aa22.46■■□□□ 1.19
CTSA-213ENST00000606782 TSPOAP1O95153 1857 aa22.45■■□□□ 1.19
CTSA-213ENST00000606782 EPRSP07814 1512 aaKnown RBP22.45■■□□□ 1.18
CTSA-213ENST00000606782 KDM6BO15054 1643 aa22.43■■□□□ 1.18
CTSA-213ENST00000606782 AEBP2Q6ZN18 517 aaPredicted RBP22.41■■□□□ 1.18
CTSA-213ENST00000606782 PPRC1Q5VV67 1664 aaKnown RBP22.41■■□□□ 1.18
CTSA-213ENST00000606782 WDR7Q9Y4E6 1490 aa22.38■■□□□ 1.17
CTSA-213ENST00000606782 MAP3K4Q9Y6R4 1608 aa22.38■■□□□ 1.17
CTSA-213ENST00000606782 SAMD9Q5K651 1589 aa22.35■■□□□ 1.17
CTSA-213ENST00000606782 FAM9AQ8IZU1 332 aaPredicted RBP22.33■■□□□ 1.17
CTSA-213ENST00000606782 P3H3Q8IVL6 736 aa22.31■■□□□ 1.16
CTSA-213ENST00000606782 TEX14Q8IWB6 1497 aa22.3■■□□□ 1.16
CTSA-213ENST00000606782 CHIC1Q5VXU3 224 aa22.28■■□□□ 1.16
CTSA-213ENST00000606782 ATP10BO94823 1461 aa22.28■■□□□ 1.16
CTSA-213ENST00000606782 COL17A1Q9UMD9 1497 aaPredicted RBP22.28■■□□□ 1.16
CTSA-213ENST00000606782 KIF21BO75037 1637 aa22.28■■□□□ 1.16
CTSA-213ENST00000606782 MAGI3Q5TCQ9 1506 aa22.25■■□□□ 1.15
CTSA-213ENST00000606782 KCNH8Q96L42 1107 aa22.23■■□□□ 1.15
CTSA-213ENST00000606782 CFAP43Q8NDM7 1665 aa22.23■■□□□ 1.15
CTSA-213ENST00000606782 CD109Q6YHK3 1445 aa22.23■■□□□ 1.15
CTSA-213ENST00000606782 RAPGEF6Q8TEU7 1601 aa22.2■■□□□ 1.14
CTSA-213ENST00000606782 KDM4FA0A1W2PPD8 638 aa22.19■■□□□ 1.14
CTSA-213ENST00000606782 EFCAB5A4FU69 1503 aa22.16■■□□□ 1.14
CTSA-213ENST00000606782 FHOD3Q2V2M9 1422 aa22.16■■□□□ 1.14
CTSA-213ENST00000606782 NUP153P49790 1475 aaKnown RBP22.15■■□□□ 1.14
CTSA-213ENST00000606782 ARID3CA6NKF2 412 aa22.15■■□□□ 1.14
CTSA-213ENST00000606782 RANGAP1P46060 587 aaPredicted RBP22.12■■□□□ 1.13
CTSA-213ENST00000606782 ABCA9Q8IUA7 1624 aa22.11■■□□□ 1.13
CTSA-213ENST00000606782 PHLDB1Q86UU1 1377 aa22.08■■□□□ 1.12
CTSA-213ENST00000606782 ARAP3Q8WWN8 1544 aa22.07■■□□□ 1.12
CTSA-213ENST00000606782 UBTFP17480 764 aaKnown RBP22.06■■□□□ 1.12
CTSA-213ENST00000606782 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.04■■□□□ 1.12
CTSA-213ENST00000606782 HNRNPUL2Q1KMD3 747 aaKnown RBP22.04■■□□□ 1.12
CTSA-213ENST00000606782 PLEKHD1A6NEE1 506 aa22.03■■□□□ 1.12
CTSA-213ENST00000606782 ADGRL1O94910 1474 aa22.01■■□□□ 1.11
CTSA-213ENST00000606782 NEO1Q92859 1461 aa22■■□□□ 1.11
CTSA-213ENST00000606782 ARHGAP35Q9NRY4 1499 aa21.99■■□□□ 1.11
CTSA-213ENST00000606782 FMN1Q68DA7 1419 aa21.97■■□□□ 1.11
CTSA-213ENST00000606782 EHMT2Q96KQ7 1210 aa21.95■■□□□ 1.1
CTSA-213ENST00000606782 CDK13Q14004 1512 aaKnown RBP21.9■■□□□ 1.1
CTSA-213ENST00000606782 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.9■■□□□ 1.1
CTSA-213ENST00000606782 RAPGEF3O95398 923 aa21.89■■□□□ 1.09
CTSA-213ENST00000606782 HECW1Q76N89 1606 aa21.88■■□□□ 1.09
CTSA-213ENST00000606782 FRMPD1Q5SYB0 1578 aa21.85■■□□□ 1.09
CTSA-213ENST00000606782 FANCAO15360 1455 aa21.84■■□□□ 1.09
CTSA-213ENST00000606782 TTC37Q6PGP7 1564 aa21.84■■□□□ 1.09
CTSA-213ENST00000606782 AKNAQ7Z591 1439 aa21.84■■□□□ 1.09
CTSA-213ENST00000606782 CDK11AQ9UQ88 783 aaPredicted RBP21.83■■□□□ 1.09
CTSA-213ENST00000606782 DENND4BO75064 1496 aaPredicted RBP21.82■■□□□ 1.08
CTSA-213ENST00000606782 CFAP74Q9C0B2 1584 aa21.82■■□□□ 1.08
CTSA-213ENST00000606782 PLCH2O75038 1416 aa21.81■■□□□ 1.08
CTSA-213ENST00000606782 ATP1B4Q9UN42 357 aaPredicted RBP21.8■■□□□ 1.08
CTSA-213ENST00000606782 RICTORQ6R327 1708 aa21.77■■□□□ 1.08
CTSA-213ENST00000606782 TROQ12816 1431 aaPredicted RBP21.77■■□□□ 1.08
CTSA-213ENST00000606782 CASKIN1Q8WXD9 1431 aa21.77■■□□□ 1.08
CTSA-213ENST00000606782 ZMYM4Q5VZL5 1548 aa21.74■■□□□ 1.07
CTSA-213ENST00000606782 LRRIQ1Q96JM4 1722 aa21.73■■□□□ 1.07
CTSA-213ENST00000606782 ARHGEF40Q8TER5 1519 aa21.72■■□□□ 1.07
CTSA-213ENST00000606782 ADAMTSL3P82987 1691 aa21.72■■□□□ 1.07
CTSA-213ENST00000606782 MAGI2Q86UL8 1455 aa21.71■■□□□ 1.07
CTSA-213ENST00000606782 EFCAB2Q5VUJ9 269 aa21.71■■□□□ 1.07
CTSA-213ENST00000606782 CLIP1P30622 1438 aa21.71■■□□□ 1.07
CTSA-213ENST00000606782 KIF14Q15058 1648 aa21.7■■□□□ 1.06
CTSA-213ENST00000606782 SCAPERQ9BY12 1400 aa21.7■■□□□ 1.06
CTSA-213ENST00000606782 CCDC18Q5T9S5 1454 aa21.7■■□□□ 1.06
CTSA-213ENST00000606782 MYO5CQ9NQX4 1742 aa21.69■■□□□ 1.06
CTSA-213ENST00000606782 PCF11O94913 1555 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 181.7 ms