RNA–Protein interactions for RNA: ENST00000606782.1

CTSA-213, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-213ENST00000606782 NISCHQ9Y2I1 1504 aa33.22■■■□□ 2.91
CTSA-213ENST00000606782 CCDC180Q9P1Z9 1646 aa29.71■■■□□ 2.35
CTSA-213ENST00000606782 ABCC9O60706 1549 aa29.45■■■□□ 2.31
CTSA-213ENST00000606782 RB1CC1Q8TDY2 1594 aa28.17■■■□□ 2.1
CTSA-213ENST00000606782 NACADO15069 1562 aa28.07■■■□□ 2.08
CTSA-213ENST00000606782 DCAF8L2P0C7V8 631 aa27.83■■■□□ 2.05
CTSA-213ENST00000606782 MYO15BQ96JP2 1530 aa27.82■■■□□ 2.04
CTSA-213ENST00000606782 ZCCHC6Q5VYS8 1495 aaKnown RBP27.57■■■□□ 2
CTSA-213ENST00000606782 DNAJC5BQ9UF47 199 aa27.53■■■□□ 2
CTSA-213ENST00000606782 DCAF1Q9Y4B6 1507 aa27.51■■■□□ 2
CTSA-213ENST00000606782 UNC13AQ9UPW8 1703 aa27.49■■□□□ 1.99
CTSA-213ENST00000606782 PABPN1Q86U42 306 aaKnown RBP eCLIP27.45■■□□□ 1.98
CTSA-213ENST00000606782 BICRAQ9NZM4 1560 aa27.37■■□□□ 1.97
CTSA-213ENST00000606782 SHROOM4Q9ULL8 1493 aa27.08■■□□□ 1.93
CTSA-213ENST00000606782 SCRIBQ14160 1630 aa27■■□□□ 1.91
CTSA-213ENST00000606782 EIF4G1Q04637 1599 aaKnown RBP26.65■■□□□ 1.86
CTSA-213ENST00000606782 CC2D2AQ9P2K1 1620 aa26.65■■□□□ 1.86
CTSA-213ENST00000606782 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
CTSA-213ENST00000606782 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
CTSA-213ENST00000606782 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
CTSA-213ENST00000606782 SMARCA4P51532 1647 aa25.84■■□□□ 1.73
CTSA-213ENST00000606782 SMARCA2P51531 1590 aa25.78■■□□□ 1.72
CTSA-213ENST00000606782 BAZ1AQ9NRL2 1556 aaPredicted RBP25.76■■□□□ 1.71
CTSA-213ENST00000606782 HMGXB3Q12766 1538 aa25.73■■□□□ 1.71
CTSA-213ENST00000606782 PEG3Q9GZU2 1588 aa25.65■■□□□ 1.7
CTSA-213ENST00000606782 MROH2BQ7Z745 1585 aa25.57■■□□□ 1.68
CTSA-213ENST00000606782 BAZ1BQ9UIG0 1483 aaKnown RBP25.56■■□□□ 1.68
CTSA-213ENST00000606782 ERCC6Q03468 1493 aa25.4■■□□□ 1.66
CTSA-213ENST00000606782 CUX2O14529 1486 aa25.38■■□□□ 1.65
CTSA-213ENST00000606782 NESP48681 1621 aa25.37■■□□□ 1.65
CTSA-213ENST00000606782 LAMC3Q9Y6N6 1575 aa25.27■■□□□ 1.64
CTSA-213ENST00000606782 WIZO95785 1651 aa25.23■■□□□ 1.63
CTSA-213ENST00000606782 DNAJC5Q9H3Z4 198 aa25.17■■□□□ 1.62
CTSA-213ENST00000606782 RSF1Q96T23 1441 aaPredicted RBP25.14■■□□□ 1.62
CTSA-213ENST00000606782 CADPSQ9ULU8 1353 aa25.14■■□□□ 1.61
CTSA-213ENST00000606782 PDS5BQ9NTI5 1447 aa25.13■■□□□ 1.61
CTSA-213ENST00000606782 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
CTSA-213ENST00000606782 KIF21AQ7Z4S6 1674 aa25.02■■□□□ 1.6
CTSA-213ENST00000606782 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
CTSA-213ENST00000606782 CFTRP13569 1480 aa24.89■■□□□ 1.58
CTSA-213ENST00000606782 MRC2Q9UBG0 1479 aa24.88■■□□□ 1.57
CTSA-213ENST00000606782 WDR62O43379 1518 aa24.82■■□□□ 1.56
CTSA-213ENST00000606782 FANCD2Q9BXW9 1451 aa24.8■■□□□ 1.56
CTSA-213ENST00000606782 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
CTSA-213ENST00000606782 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.54
CTSA-213ENST00000606782 URB2Q14146 1524 aaKnown RBP24.6■■□□□ 1.53
CTSA-213ENST00000606782 PRDM2Q13029 1718 aa24.58■■□□□ 1.53
CTSA-213ENST00000606782 ABCC8Q09428 1581 aa24.37■■□□□ 1.49
CTSA-213ENST00000606782 TOPBP1Q92547 1522 aa24.36■■□□□ 1.49
CTSA-213ENST00000606782 IFT140Q96RY7 1462 aa24.33■■□□□ 1.49
CTSA-213ENST00000606782 DNMBPQ6XZF7 1577 aa24.29■■□□□ 1.48
CTSA-213ENST00000606782 OSCARQ8IYS5 282 aa24.25■■□□□ 1.47
CTSA-213ENST00000606782 ZNF608Q9ULD9 1512 aaPredicted RBP24.25■■□□□ 1.47
CTSA-213ENST00000606782 TARBP1Q13395 1621 aaKnown RBP24.14■■□□□ 1.46
CTSA-213ENST00000606782 POLA1P09884 1462 aaPredicted RBP24.13■■□□□ 1.45
CTSA-213ENST00000606782 EIF4G3O43432 1585 aaKnown RBP24.09■■□□□ 1.45
CTSA-213ENST00000606782 SUPT5HO00267 1087 aaKnown RBP24.08■■□□□ 1.45
CTSA-213ENST00000606782 AQRO60306 1485 aaKnown RBP eCLIP24.05■■□□□ 1.449e-10■■■■□ 21
CTSA-213ENST00000606782 SOGA1O94964 1423 aa24.03■■□□□ 1.44
CTSA-213ENST00000606782 RAD54L2Q9Y4B4 1467 aa24.01■■□□□ 1.43
CTSA-213ENST00000606782 CUX1P39880 1505 aa24.01■■□□□ 1.43
CTSA-213ENST00000606782 TRIM41Q8WV44 630 aa24■■□□□ 1.43
CTSA-213ENST00000606782 FGD5Q6ZNL6 1462 aa23.99■■□□□ 1.43
CTSA-213ENST00000606782 WDR97A6NE52 1622 aa23.95■■□□□ 1.42
CTSA-213ENST00000606782 TDRD9Q8NDG6 1382 aaKnown RBP23.94■■□□□ 1.42
CTSA-213ENST00000606782 CHD1O14646 1710 aa23.86■■□□□ 1.41
CTSA-213ENST00000606782 RIMBP3CA6NJZ7 1639 aa23.85■■□□□ 1.41
CTSA-213ENST00000606782 RIMBP3BA6NNM3 1639 aa23.85■■□□□ 1.41
CTSA-213ENST00000606782 RIMBP3Q9UFD9 1639 aa23.85■■□□□ 1.41
CTSA-213ENST00000606782 ARHGEF11O15085 1522 aa23.83■■□□□ 1.41
CTSA-213ENST00000606782 FBLN2P98095 1184 aa23.8■■□□□ 1.4
CTSA-213ENST00000606782 GRIN2BQ13224 1484 aa23.8■■□□□ 1.4
CTSA-213ENST00000606782 SNAPC4Q5SXM2 1469 aa23.79■■□□□ 1.4
CTSA-213ENST00000606782 MAGI1Q96QZ7 1491 aaPredicted RBP23.79■■□□□ 1.4
CTSA-213ENST00000606782 ABCA10Q8WWZ4 1543 aa23.78■■□□□ 1.4
CTSA-213ENST00000606782 GAPVD1Q14C86 1478 aa23.74■■□□□ 1.39
CTSA-213ENST00000606782 CHMP7Q8WUX9 453 aaPredicted RBP23.71■■□□□ 1.39
CTSA-213ENST00000606782 SYNJ2O15056 1496 aa23.7■■□□□ 1.38
CTSA-213ENST00000606782 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
CTSA-213ENST00000606782 TOP2BQ02880 1626 aa23.69■■□□□ 1.38
CTSA-213ENST00000606782 ABCA5Q8WWZ7 1642 aa23.69■■□□□ 1.38
CTSA-213ENST00000606782 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
CTSA-213ENST00000606782 CLASP1Q7Z460 1538 aa23.66■■□□□ 1.38
CTSA-213ENST00000606782 PBRM1Q86U86 1689 aa23.65■■□□□ 1.38
CTSA-213ENST00000606782 SYNJ1O43426 1573 aa23.64■■□□□ 1.37
CTSA-213ENST00000606782 CYB5RLQ6IPT4 315 aa23.62■■□□□ 1.37
CTSA-213ENST00000606782 ARAP1Q96P48 1450 aa23.61■■□□□ 1.37
CTSA-213ENST00000606782 GRIN2AQ12879 1464 aa23.48■■□□□ 1.35
CTSA-213ENST00000606782 ERICH3Q5RHP9 1530 aa23.48■■□□□ 1.35
CTSA-213ENST00000606782 ADAMTS12P58397 1594 aa23.48■■□□□ 1.35
CTSA-213ENST00000606782 FHAD1B1AJZ9 1412 aa23.46■■□□□ 1.35
CTSA-213ENST00000606782 NUP160Q12769 1436 aa23.44■■□□□ 1.34
CTSA-213ENST00000606782 CEP170Q5SW79 1584 aa23.37■■□□□ 1.33
CTSA-213ENST00000606782 SHROOM2Q13796 1616 aa23.3■■□□□ 1.32
CTSA-213ENST00000606782 ERCC6L2Q5T890 1561 aa23.26■■□□□ 1.31
CTSA-213ENST00000606782 IGF1RP08069 1367 aa23.25■■□□□ 1.31
CTSA-213ENST00000606782 TRHP20396 242 aaPredicted RBP23.24■■□□□ 1.31
CTSA-213ENST00000606782 KIF27Q86VH2 1401 aa23.24■■□□□ 1.31
CTSA-213ENST00000606782 JPH4Q96JJ6 628 aa23.19■■□□□ 1.3
CTSA-213ENST00000606782 PRG4Q92954 1404 aaPredicted RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms