RNA–Protein interactions for RNA: ENST00000606715.3

SHANK2-219, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

Gene SHANK2, Length 5,738 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-219ENST00000606715 CHIC2Q9UKJ5 165 aa14.93□□□□□ -0.02
SHANK2-219ENST00000606715 TNIKQ9UKE5 1360 aa14.92□□□□□ -0.02
SHANK2-219ENST00000606715 SENP3Q9H4L4 574 aaPredicted RBP14.89□□□□□ -0.03
SHANK2-219ENST00000606715 TRHP20396 242 aaPredicted RBP14.89□□□□□ -0.03
SHANK2-219ENST00000606715 CEP162Q5TB80 1403 aa14.88□□□□□ -0.03
SHANK2-219ENST00000606715 CUX2O14529 1486 aa14.88□□□□□ -0.03
SHANK2-219ENST00000606715 CADPSQ9ULU8 1353 aa14.88□□□□□ -0.03
SHANK2-219ENST00000606715 HSP90AA1P07900 732 aaKnown RBP14.87□□□□□ -0.03
SHANK2-219ENST00000606715 MROH2BQ7Z745 1585 aa14.87□□□□□ -0.03
SHANK2-219ENST00000606715 CARMIL2Q6F5E8 1435 aa14.87□□□□□ -0.03
SHANK2-219ENST00000606715 CFDP1Q9UEE9 299 aaPredicted RBP14.86□□□□□ -0.03
SHANK2-219ENST00000606715 FHAD1B1AJZ9 1412 aa14.86□□□□□ -0.03
SHANK2-219ENST00000606715 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
SHANK2-219ENST00000606715 CARMIL1Q5VZK9 1371 aa14.85□□□□□ -0.03
SHANK2-219ENST00000606715 SOGA1O94964 1423 aa14.83□□□□□ -0.04
SHANK2-219ENST00000606715 ARXQ96QS3 562 aa14.83□□□□□ -0.04
SHANK2-219ENST00000606715 EIF4G1Q04637 1599 aaKnown RBP14.83□□□□□ -0.04
SHANK2-219ENST00000606715 CCDC88BA6NC98 1476 aa14.83□□□□□ -0.04
SHANK2-219ENST00000606715 CDK11BP21127 795 aaKnown RBP14.82□□□□□ -0.04
SHANK2-219ENST00000606715 ATAD2BQ9ULI0 1458 aa14.81□□□□□ -0.04
SHANK2-219ENST00000606715 ABCC8Q09428 1581 aa14.81□□□□□ -0.04
SHANK2-219ENST00000606715 NPHP1O15259 732 aa14.77□□□□□ -0.04
SHANK2-219ENST00000606715 KDM2AQ9Y2K7 1162 aa14.77□□□□□ -0.04
SHANK2-219ENST00000606715 SMARCA4P51532 1647 aa14.77□□□□□ -0.05
SHANK2-219ENST00000606715 UPF2Q9HAU5 1272 aaKnown RBP14.77□□□□□ -0.05
SHANK2-219ENST00000606715 WDR43Q15061 677 aaKnown RBP eCLIP14.75□□□□□ -0.05
SHANK2-219ENST00000606715 ANP32BQ92688 251 aaKnown RBP14.75□□□□□ -0.05
SHANK2-219ENST00000606715 LMOD2Q6P5Q4 547 aa14.75□□□□□ -0.05
SHANK2-219ENST00000606715 RRP7BPQ9NSQ0 103 aa14.74□□□□□ -0.05
SHANK2-219ENST00000606715 SALL2Q9Y467 1007 aaPredicted RBP14.73□□□□□ -0.05
SHANK2-219ENST00000606715 CCNB3Q8WWL7 1395 aa14.73□□□□□ -0.05
SHANK2-219ENST00000606715 ANP32AP39687 249 aaKnown RBP14.71□□□□□ -0.05
SHANK2-219ENST00000606715 MYH16Q9H6N6 1097 aa14.71□□□□□ -0.05
SHANK2-219ENST00000606715 CDCA8Q53HL2 280 aa14.7□□□□□ -0.06
SHANK2-219ENST00000606715 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.69□□□□□ -0.06
SHANK2-219ENST00000606715 EIF4G2P78344 907 aaKnown RBP eCLIP14.68□□□□□ -0.06
SHANK2-219ENST00000606715 GTF3C3Q9Y5Q9 886 aa14.68□□□□□ -0.06
SHANK2-219ENST00000606715 EIF5BO60841 1220 aaKnown RBP14.67□□□□□ -0.06
SHANK2-219ENST00000606715 TMC1Q8TDI8 760 aa14.67□□□□□ -0.06
SHANK2-219ENST00000606715 FANCD2Q9BXW9 1451 aa14.67□□□□□ -0.06
SHANK2-219ENST00000606715 KANK1Q14678 1352 aa14.67□□□□□ -0.06
SHANK2-219ENST00000606715 TDRD9Q8NDG6 1382 aaKnown RBP14.66□□□□□ -0.06
SHANK2-219ENST00000606715 HDGFP51858 240 aaKnown RBP14.65□□□□□ -0.06
SHANK2-219ENST00000606715 FAM9BQ8IZU0 186 aa14.65□□□□□ -0.06
SHANK2-219ENST00000606715 WIZO95785 1651 aa14.64□□□□□ -0.07
SHANK2-219ENST00000606715 FMN1Q68DA7 1419 aa14.62□□□□□ -0.07
SHANK2-219ENST00000606715 DDX10Q13206 875 aaKnown RBP14.61□□□□□ -0.07
SHANK2-219ENST00000606715 TULP1O00294 542 aaPredicted RBP14.6□□□□□ -0.07
SHANK2-219ENST00000606715 NCAPD3P42695 1498 aa14.6□□□□□ -0.07
SHANK2-219ENST00000606715 OSCARQ8IYS5 282 aa14.6□□□□□ -0.07
SHANK2-219ENST00000606715 PPM1GO15355 546 aaPredicted RBP14.59□□□□□ -0.07
SHANK2-219ENST00000606715 HNRNPUQ00839 825 aaKnown RBP eCLIP14.56□□□□□ -0.08
SHANK2-219ENST00000606715 POGKQ9P215 609 aa14.55□□□□□ -0.08
SHANK2-219ENST00000606715 EFCAB2Q5VUJ9 269 aa14.55□□□□□ -0.08
SHANK2-219ENST00000606715 RGL3Q3MIN7 710 aa14.55□□□□□ -0.08
SHANK2-219ENST00000606715 MLECQ14165 292 aa14.55□□□□□ -0.08
SHANK2-219ENST00000606715 VPS8Q8N3P4 1428 aa14.54□□□□□ -0.08
SHANK2-219ENST00000606715 RAPGEF2Q9Y4G8 1499 aa14.54□□□□□ -0.08
SHANK2-219ENST00000606715 CFAP53Q96M91 514 aa14.54□□□□□ -0.08
SHANK2-219ENST00000606715 ARHGAP35Q9NRY4 1499 aa14.52□□□□□ -0.09
SHANK2-219ENST00000606715 TIMELESSQ9UNS1 1208 aa14.51□□□□□ -0.09
SHANK2-219ENST00000606715 MRS2Q9HD23 443 aa14.51□□□□□ -0.09
SHANK2-219ENST00000606715 RSPH4AQ5TD94 716 aa14.5□□□□□ -0.09
SHANK2-219ENST00000606715 CARD11Q9BXL7 1154 aa14.49□□□□□ -0.09
SHANK2-219ENST00000606715 JPH4Q96JJ6 628 aa14.49□□□□□ -0.09
SHANK2-219ENST00000606715 GOLGA2Q08379 1002 aa14.48□□□□□ -0.09
SHANK2-219ENST00000606715 KNSTRNQ9Y448 316 aa14.47□□□□□ -0.09
SHANK2-219ENST00000606715 GLIPR1L2Q4G1C9 344 aa14.45□□□□□ -0.1
SHANK2-219ENST00000606715 CCDC136Q96JN2 1154 aa14.43□□□□□ -0.1
SHANK2-219ENST00000606715 LAS1LQ9Y4W2 734 aaKnown RBP14.42□□□□□ -0.1
SHANK2-219ENST00000606715 ANKRD30AQ9BXX3 1397 aa14.42□□□□□ -0.1
SHANK2-219ENST00000606715 PTPRGP23470 1445 aa14.41□□□□□ -0.1
SHANK2-219ENST00000606715 CC2D2AQ9P2K1 1620 aa14.41□□□□□ -0.1
SHANK2-219ENST00000606715 MAPK8IP3Q9UPT6 1336 aa14.41□□□□□ -0.1
SHANK2-219ENST00000606715 NCLP19338 710 aaKnown RBP14.41□□□□□ -0.1
SHANK2-219ENST00000606715 GAPVD1Q14C86 1478 aa14.41□□□□□ -0.1
SHANK2-219ENST00000606715 CCDC18Q5T9S5 1454 aa14.41□□□□□ -0.1
SHANK2-219ENST00000606715 AEBP2Q6ZN18 517 aaPredicted RBP14.41□□□□□ -0.1
SHANK2-219ENST00000606715 ZRSR1Q15695 479 aaKnown RBP14.4□□□□□ -0.1
SHANK2-219ENST00000606715 MRC2Q9UBG0 1479 aa14.4□□□□□ -0.1
SHANK2-219ENST00000606715 NUDCQ9Y266 331 aa14.4□□□□□ -0.1
SHANK2-219ENST00000606715 CCDC9Q9Y3X0 531 aaKnown RBP14.4□□□□□ -0.1
SHANK2-219ENST00000606715 FKBP8Q14318 412 aa14.39□□□□□ -0.11
SHANK2-219ENST00000606715 HMGXB3Q12766 1538 aa14.39□□□□□ -0.11
SHANK2-219ENST00000606715 SETD5Q9C0A6 1442 aa14.39□□□□□ -0.11
SHANK2-219ENST00000606715 GGT6Q6P531 493 aa14.38□□□□□ -0.11
SHANK2-219ENST00000606715 CASC1Q6TDU7 716 aa14.37□□□□□ -0.11
SHANK2-219ENST00000606715 FGD5Q6ZNL6 1462 aa14.37□□□□□ -0.11
SHANK2-219ENST00000606715 CYB5RLQ6IPT4 315 aa14.37□□□□□ -0.11
SHANK2-219ENST00000606715 TMX4Q9H1E5 349 aaPredicted RBP14.37□□□□□ -0.11
SHANK2-219ENST00000606715 TAOK2Q9UL54 1235 aa14.37□□□□□ -0.11
SHANK2-219ENST00000606715 OS9Q13438 667 aaPredicted RBP14.37□□□□□ -0.11
SHANK2-219ENST00000606715 TMF1P82094 1093 aa14.36□□□□□ -0.11
SHANK2-219ENST00000606715 PNNQ9H307 717 aaKnown RBP14.36□□□□□ -0.11
SHANK2-219ENST00000606715 SOX12O15370 315 aa14.36□□□□□ -0.11
SHANK2-219ENST00000606715 ISY1Q9ULR0 285 aaKnown RBP14.35□□□□□ -0.11
SHANK2-219ENST00000606715 NCBP3Q53F19 620 aaKnown RBP14.34□□□□□ -0.11
SHANK2-219ENST00000606715 DCAF11Q8TEB1 546 aa14.33□□□□□ -0.11
SHANK2-219ENST00000606715 IFT140Q96RY7 1462 aa14.33□□□□□ -0.12
SHANK2-219ENST00000606715 SPAG9O60271 1321 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms