RNA–Protein interactions for RNA: ENST00000602655.5

PPFIA3-206, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 1 (best)

Gene PPFIA3, Length 3,493 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-206ENST00000602655 TSHZ2Q9NRE2 1034 aa22.36■■□□□ 1.17
PPFIA3-206ENST00000602655 URB2Q14146 1524 aaKnown RBP22.34■■□□□ 1.17
PPFIA3-206ENST00000602655 FAM50AQ14320 339 aaKnown RBP22.33■■□□□ 1.17
PPFIA3-206ENST00000602655 SUPT16HQ9Y5B9 1047 aaKnown RBP22.31■■□□□ 1.16
PPFIA3-206ENST00000602655 BCANQ96GW7 911 aa22.29■■□□□ 1.16
PPFIA3-206ENST00000602655 CHMP7Q8WUX9 453 aaPredicted RBP22.27■■□□□ 1.16
PPFIA3-206ENST00000602655 PRXQ9BXM0 1461 aa22.26■■□□□ 1.15
PPFIA3-206ENST00000602655 BIVM-ERCC5R4GMW8 1640 aa22.22■■□□□ 1.15
PPFIA3-206ENST00000602655 VPS8Q8N3P4 1428 aa22.21■■□□□ 1.15
PPFIA3-206ENST00000602655 FHOD3Q2V2M9 1422 aa22.21■■□□□ 1.15
PPFIA3-206ENST00000602655 ERICH6Q7L0X2 663 aa22.2■■□□□ 1.14
PPFIA3-206ENST00000602655 ARAP1Q96P48 1450 aa22.19■■□□□ 1.14
PPFIA3-206ENST00000602655 KIF21BO75037 1637 aa22.16■■□□□ 1.14
PPFIA3-206ENST00000602655 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
PPFIA3-206ENST00000602655 ZNF608Q9ULD9 1512 aaPredicted RBP22.14■■□□□ 1.13
PPFIA3-206ENST00000602655 DNMBPQ6XZF7 1577 aa22.13■■□□□ 1.13
PPFIA3-206ENST00000602655 LAMC3Q9Y6N6 1575 aa22.13■■□□□ 1.13
PPFIA3-206ENST00000602655 KIF21AQ7Z4S6 1674 aa22.11■■□□□ 1.13
PPFIA3-206ENST00000602655 ARHGAP35Q9NRY4 1499 aa22.07■■□□□ 1.12
PPFIA3-206ENST00000602655 CHIC2Q9UKJ5 165 aa22.02■■□□□ 1.12
PPFIA3-206ENST00000602655 ABCA10Q8WWZ4 1543 aa22.01■■□□□ 1.11
PPFIA3-206ENST00000602655 MRC2Q9UBG0 1479 aa22■■□□□ 1.11
PPFIA3-206ENST00000602655 ZNF777Q9ULD5 760 aaPredicted RBP21.95■■□□□ 1.1
PPFIA3-206ENST00000602655 ERICH3Q5RHP9 1530 aa21.93■■□□□ 1.1
PPFIA3-206ENST00000602655 CLSPNQ9HAW4 1339 aa21.93■■□□□ 1.1
PPFIA3-206ENST00000602655 MTUS2Q5JR59 1369 aa21.91■■□□□ 1.1
PPFIA3-206ENST00000602655 RBM19Q9Y4C8 960 aaKnown RBP21.88■■□□□ 1.09
PPFIA3-206ENST00000602655 FKBP8Q14318 412 aa21.88■■□□□ 1.09
PPFIA3-206ENST00000602655 ANO8Q9HCE9 1232 aaPredicted RBP21.84■■□□□ 1.09
PPFIA3-206ENST00000602655 PRDM2Q13029 1718 aa21.83■■□□□ 1.09
PPFIA3-206ENST00000602655 JPH4Q96JJ6 628 aa21.83■■□□□ 1.08
PPFIA3-206ENST00000602655 SNAPC4Q5SXM2 1469 aa21.82■■□□□ 1.08
PPFIA3-206ENST00000602655 RRP7BPQ9NSQ0 103 aa21.82■■□□□ 1.08
PPFIA3-206ENST00000602655 NEFLP07196 543 aa21.8■■□□□ 1.08
PPFIA3-206ENST00000602655 PHLDB1Q86UU1 1377 aa21.77■■□□□ 1.08
PPFIA3-206ENST00000602655 GRIN2BQ13224 1484 aa21.77■■□□□ 1.08
PPFIA3-206ENST00000602655 CCNB3Q8WWL7 1395 aa21.77■■□□□ 1.08
PPFIA3-206ENST00000602655 KCNH8Q96L42 1107 aa21.76■■□□□ 1.07
PPFIA3-206ENST00000602655 FHAD1B1AJZ9 1412 aa21.75■■□□□ 1.07
PPFIA3-206ENST00000602655 TRIM52Q96A61 297 aa21.74■■□□□ 1.07
PPFIA3-206ENST00000602655 IFT140Q96RY7 1462 aa21.73■■□□□ 1.07
PPFIA3-206ENST00000602655 SIN3AQ96ST3 1273 aa21.7■■□□□ 1.06
PPFIA3-206ENST00000602655 HIRIP3Q9BW71 556 aaPredicted RBP21.67■■□□□ 1.06
PPFIA3-206ENST00000602655 ZNF644Q9H582 1327 aaPredicted RBP21.66■■□□□ 1.06
PPFIA3-206ENST00000602655 TARBP1Q13395 1621 aaKnown RBP21.65■■□□□ 1.06
PPFIA3-206ENST00000602655 DEKP35659 375 aaKnown RBP21.64■■□□□ 1.06
PPFIA3-206ENST00000602655 CCDC136Q96JN2 1154 aa21.64■■□□□ 1.05
PPFIA3-206ENST00000602655 FMN1Q68DA7 1419 aa21.63■■□□□ 1.05
PPFIA3-206ENST00000602655 PCF11O94913 1555 aaKnown RBP21.61■■□□□ 1.05
PPFIA3-206ENST00000602655 LRRC9Q6ZRR7 1453 aa21.6■■□□□ 1.05
PPFIA3-206ENST00000602655 MSH5O43196 834 aa21.6■■□□□ 1.05
PPFIA3-206ENST00000602655 FOXD1Q16676 465 aa21.59■■□□□ 1.05
PPFIA3-206ENST00000602655 ABCA5Q8WWZ7 1642 aa21.58■■□□□ 1.05
PPFIA3-206ENST00000602655 MYT1LQ9UL68 1186 aa21.57■■□□□ 1.04
PPFIA3-206ENST00000602655 CDK11AQ9UQ88 783 aaPredicted RBP21.56■■□□□ 1.04
PPFIA3-206ENST00000602655 CDK13Q14004 1512 aaKnown RBP21.55■■□□□ 1.04
PPFIA3-206ENST00000602655 WDR62O43379 1518 aa21.55■■□□□ 1.04
PPFIA3-206ENST00000602655 RAB3GAP2Q9H2M9 1393 aa21.55■■□□□ 1.04
PPFIA3-206ENST00000602655 PLEKHD1A6NEE1 506 aa21.53■■□□□ 1.04
PPFIA3-206ENST00000602655 NBR1Q14596 966 aa21.53■■□□□ 1.04
PPFIA3-206ENST00000602655 GRIN2AQ12879 1464 aa21.53■■□□□ 1.04
PPFIA3-206ENST00000602655 CUL7Q14999 1698 aa21.53■■□□□ 1.04
PPFIA3-206ENST00000602655 EIF4G3O43432 1585 aaKnown RBP21.53■■□□□ 1.04
PPFIA3-206ENST00000602655 CFDP1Q9UEE9 299 aaPredicted RBP21.52■■□□□ 1.04
PPFIA3-206ENST00000602655 SALL2Q9Y467 1007 aaPredicted RBP21.52■■□□□ 1.04
PPFIA3-206ENST00000602655 CASKIN1Q8WXD9 1431 aa21.51■■□□□ 1.03
PPFIA3-206ENST00000602655 PLB1Q6P1J6 1458 aa21.5■■□□□ 1.03
PPFIA3-206ENST00000602655 RTN4Q9NQC3 1192 aaKnown RBP21.49■■□□□ 1.03
PPFIA3-206ENST00000602655 TIAM1Q13009 1591 aa21.49■■□□□ 1.03
PPFIA3-206ENST00000602655 CNGB1Q14028 1251 aaPredicted RBP21.49■■□□□ 1.03
PPFIA3-206ENST00000602655 IQGAP2Q13576 1575 aa21.46■■□□□ 1.03
PPFIA3-206ENST00000602655 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.45■■□□□ 1.02
PPFIA3-206ENST00000602655 DHX57Q6P158 1386 aaKnown RBP21.43■■□□□ 1.02
PPFIA3-206ENST00000602655 PRG4Q92954 1404 aaPredicted RBP21.43■■□□□ 1.02
PPFIA3-206ENST00000602655 ADAMTS12P58397 1594 aa21.43■■□□□ 1.02
PPFIA3-206ENST00000602655 PBRM1Q86U86 1689 aa21.42■■□□□ 1.02
PPFIA3-206ENST00000602655 KIAA0586Q9BVV6 1533 aa21.42■■□□□ 1.02
PPFIA3-206ENST00000602655 SYNJ2O15056 1496 aa21.42■■□□□ 1.02
PPFIA3-206ENST00000602655 ZNF326Q5BKZ1 582 aaKnown RBP21.41■■□□□ 1.02
PPFIA3-206ENST00000602655 WDR97A6NE52 1622 aa21.41■■□□□ 1.02
PPFIA3-206ENST00000602655 CARMIL2Q6F5E8 1435 aa21.4■■□□□ 1.02
PPFIA3-206ENST00000602655 THOC2Q8NI27 1593 aaKnown RBP21.4■■□□□ 1.02
PPFIA3-206ENST00000602655 HNRNPMP52272 730 aaKnown RBP eCLIP21.4■■□□□ 1.02
PPFIA3-206ENST00000602655 PTPRGP23470 1445 aa21.39■■□□□ 1.02
PPFIA3-206ENST00000602655 NCOA2Q15596 1464 aa21.39■■□□□ 1.02
PPFIA3-206ENST00000602655 FYCO1Q9BQS8 1478 aa21.39■■□□□ 1.01
PPFIA3-206ENST00000602655 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.38■■□□□ 1.01
PPFIA3-206ENST00000602655 RRBP1Q9P2E9 1410 aaKnown RBP21.38■■□□□ 1.01
PPFIA3-206ENST00000602655 SETD5Q9C0A6 1442 aa21.36■■□□□ 1.01
PPFIA3-206ENST00000602655 CTTNBP2Q8WZ74 1663 aa21.36■■□□□ 1.01
PPFIA3-206ENST00000602655 EFCAB5A4FU69 1503 aa21.36■■□□□ 1.01
PPFIA3-206ENST00000602655 FGD6Q6ZV73 1430 aa21.35■■□□□ 1.01
PPFIA3-206ENST00000602655 IRX6P78412 446 aaPredicted RBP21.34■■□□□ 1.01
PPFIA3-206ENST00000602655 EPRSP07814 1512 aaKnown RBP21.33■■□□□ 1
PPFIA3-206ENST00000602655 MAGI1Q96QZ7 1491 aaPredicted RBP21.32■■□□□ 1
PPFIA3-206ENST00000602655 EIF5BO60841 1220 aaKnown RBP21.31■■□□□ 1
PPFIA3-206ENST00000602655 DISP1Q96F81 1524 aa21.31■■□□□ 1
PPFIA3-206ENST00000602655 POLR3GLQ9BT43 218 aa21.31■■□□□ 1
PPFIA3-206ENST00000602655 PTPRKQ15262 1439 aa21.3■■□□□ 1
PPFIA3-206ENST00000602655 CEP170Q5SW79 1584 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms