RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
SHKBP1-227ENST00000602011 KIF27Q86VH2 1401 aa31.14■■■□□ 2.58
SHKBP1-227ENST00000602011 IGF1RP08069 1367 aa31.12■■■□□ 2.57
SHKBP1-227ENST00000602011 FAM69CQ0P6D2 419 aa31.11■■■□□ 2.57
SHKBP1-227ENST00000602011 NPM1P06748 294 aaKnown RBP eCLIP31.08■■■□□ 2.57
SHKBP1-227ENST00000602011 ADCY10Q96PN6 1610 aa31.06■■■□□ 2.56
SHKBP1-227ENST00000602011 ABCC10Q5T3U5 1492 aa31.06■■■□□ 2.56
SHKBP1-227ENST00000602011 KIAA0586Q9BVV6 1533 aa31.03■■■□□ 2.56
SHKBP1-227ENST00000602011 MAPKBP1O60336 1514 aa31■■■□□ 2.55
SHKBP1-227ENST00000602011 DIP2BQ9P265 1576 aa30.99■■■□□ 2.55
SHKBP1-227ENST00000602011 CUL7Q14999 1698 aa30.94■■■□□ 2.54
SHKBP1-227ENST00000602011 TTBK1Q5TCY1 1321 aaPredicted RBP30.94■■■□□ 2.54
SHKBP1-227ENST00000602011 CARMIL1Q5VZK9 1371 aa30.92■■■□□ 2.54
SHKBP1-227ENST00000602011 TSPOAP1O95153 1857 aa30.86■■■□□ 2.53
SHKBP1-227ENST00000602011 PTPRGP23470 1445 aa30.82■■■□□ 2.52
SHKBP1-227ENST00000602011 KDM6BO15054 1643 aa30.8■■■□□ 2.52
SHKBP1-227ENST00000602011 CARMIL2Q6F5E8 1435 aa30.79■■■□□ 2.52
SHKBP1-227ENST00000602011 KDM4FA0A1W2PPD8 638 aa30.73■■■□□ 2.51
SHKBP1-227ENST00000602011 TNIKQ9UKE5 1360 aa30.72■■■□□ 2.51
SHKBP1-227ENST00000602011 ABCC2Q92887 1545 aa30.68■■■□□ 2.5
SHKBP1-227ENST00000602011 IQGAP2Q13576 1575 aa30.68■■■□□ 2.5
SHKBP1-227ENST00000602011 ASXL2Q76L83 1435 aa30.64■■■□□ 2.5
SHKBP1-227ENST00000602011 DISP1Q96F81 1524 aa30.6■■■□□ 2.49
SHKBP1-227ENST00000602011 RAPGEF2Q9Y4G8 1499 aa30.59■■■□□ 2.49
SHKBP1-227ENST00000602011 PPRC1Q5VV67 1664 aaKnown RBP30.58■■■□□ 2.49
SHKBP1-227ENST00000602011 PLB1Q6P1J6 1458 aa30.57■■■□□ 2.48
SHKBP1-227ENST00000602011 UACAQ9BZF9 1416 aa30.56■■■□□ 2.48
SHKBP1-227ENST00000602011 UHRF1BP1LA0JNW5 1464 aa30.55■■■□□ 2.48
SHKBP1-227ENST00000602011 GLI2P10070 1586 aa30.52■■■□□ 2.48
SHKBP1-227ENST00000602011 UGGT2Q9NYU1 1516 aa30.47■■■□□ 2.47
SHKBP1-227ENST00000602011 COL17A1Q9UMD9 1497 aaPredicted RBP30.45■■■□□ 2.47
SHKBP1-227ENST00000602011 EPRSP07814 1512 aaKnown RBP30.45■■■□□ 2.47
SHKBP1-227ENST00000602011 KDM5BQ9UGL1 1544 aa30.44■■■□□ 2.46
SHKBP1-227ENST00000602011 KIAA0556O60303 1618 aa30.43■■■□□ 2.46
SHKBP1-227ENST00000602011 ZCCHC11Q5TAX3 1644 aaKnown RBP30.42■■■□□ 2.46
SHKBP1-227ENST00000602011 MAP3K4Q9Y6R4 1608 aa30.38■■■□□ 2.45
SHKBP1-227ENST00000602011 ADGRL1O94910 1474 aa30.37■■■□□ 2.45
SHKBP1-227ENST00000602011 FAM9AQ8IZU1 332 aaPredicted RBP30.32■■■□□ 2.44
SHKBP1-227ENST00000602011 GOLGA3Q08378 1498 aa30.31■■■□□ 2.44
SHKBP1-227ENST00000602011 TEX14Q8IWB6 1497 aa30.27■■■□□ 2.44
SHKBP1-227ENST00000602011 WDR7Q9Y4E6 1490 aa30.26■■■□□ 2.44
SHKBP1-227ENST00000602011 PRXQ9BXM0 1461 aa30.25■■■□□ 2.43
SHKBP1-227ENST00000602011 CTTNBP2Q8WZ74 1663 aa30.24■■■□□ 2.43
SHKBP1-227ENST00000602011 KCNH8Q96L42 1107 aa30.2■■■□□ 2.43
SHKBP1-227ENST00000602011 ABCA8O94911 1581 aa30.16■■■□□ 2.42
SHKBP1-227ENST00000602011 ILDR1Q86SU0 546 aaPredicted RBP30.14■■■□□ 2.42
SHKBP1-227ENST00000602011 CD109Q6YHK3 1445 aa30.13■■■□□ 2.41
SHKBP1-227ENST00000602011 ARID3CA6NKF2 412 aa30.12■■■□□ 2.41
SHKBP1-227ENST00000602011 CSRNP3Q8WYN3 585 aa30.11■■■□□ 2.41
SHKBP1-227ENST00000602011 MAGI3Q5TCQ9 1506 aa30.07■■■□□ 2.4
SHKBP1-227ENST00000602011 P3H3Q8IVL6 736 aa30.07■■■□□ 2.4
SHKBP1-227ENST00000602011 CFAP43Q8NDM7 1665 aa30.07■■■□□ 2.4
SHKBP1-227ENST00000602011 HECW2Q9P2P5 1572 aa30.05■■■□□ 2.4
SHKBP1-227ENST00000602011 EEA1Q15075 1411 aa29.97■■■□□ 2.39
SHKBP1-227ENST00000602011 ATP10BO94823 1461 aa29.94■■■□□ 2.38
SHKBP1-227ENST00000602011 KIF21BO75037 1637 aa29.93■■■□□ 2.38
SHKBP1-227ENST00000602011 PHLDB1Q86UU1 1377 aa29.89■■■□□ 2.37
SHKBP1-227ENST00000602011 ARAP3Q8WWN8 1544 aa29.85■■■□□ 2.37
SHKBP1-227ENST00000602011 RANGAP1P46060 587 aaPredicted RBP29.81■■■□□ 2.36
SHKBP1-227ENST00000602011 ABCA9Q8IUA7 1624 aa29.8■■■□□ 2.36
SHKBP1-227ENST00000602011 SAMD9Q5K651 1589 aa29.8■■■□□ 2.36
SHKBP1-227ENST00000602011 RAPGEF3O95398 923 aa29.79■■■□□ 2.36
SHKBP1-227ENST00000602011 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.77■■■□□ 2.36
SHKBP1-227ENST00000602011 HNRNPUL2Q1KMD3 747 aaKnown RBP29.77■■■□□ 2.36
SHKBP1-227ENST00000602011 RAPGEF6Q8TEU7 1601 aa29.77■■■□□ 2.36
SHKBP1-227ENST00000602011 PLEKHD1A6NEE1 506 aa29.7■■■□□ 2.35
SHKBP1-227ENST00000602011 NUP153P49790 1475 aaKnown RBP29.69■■■□□ 2.34
SHKBP1-227ENST00000602011 FHOD3Q2V2M9 1422 aa29.69■■■□□ 2.34
SHKBP1-227ENST00000602011 FRMPD1Q5SYB0 1578 aa29.67■■■□□ 2.34
SHKBP1-227ENST00000602011 NEO1Q92859 1461 aa29.66■■■□□ 2.34
SHKBP1-227ENST00000602011 ADAMTSL3P82987 1691 aa29.66■■■□□ 2.34
SHKBP1-227ENST00000602011 PTPRMP28827 1452 aa29.65■■■□□ 2.34
SHKBP1-227ENST00000602011 ARID4BQ4LE39 1312 aaPredicted RBP29.6■■■□□ 2.33
SHKBP1-227ENST00000602011 EFCAB5A4FU69 1503 aa29.58■■■□□ 2.33
SHKBP1-227ENST00000602011 BCORL1Q5H9F3 1711 aa29.57■■■□□ 2.32
SHKBP1-227ENST00000602011 MADDQ8WXG6 1647 aa29.56■■■□□ 2.32
SHKBP1-227ENST00000602011 DENND4BO75064 1496 aaPredicted RBP29.49■■■□□ 2.31
SHKBP1-227ENST00000602011 AKNAQ7Z591 1439 aa29.49■■■□□ 2.31
SHKBP1-227ENST00000602011 UBTFP17480 764 aaKnown RBP29.49■■■□□ 2.31
SHKBP1-227ENST00000602011 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.48■■■□□ 2.31
SHKBP1-227ENST00000602011 ARHGEF40Q8TER5 1519 aa29.48■■■□□ 2.31
SHKBP1-227ENST00000602011 RICTORQ6R327 1708 aa29.48■■■□□ 2.31
SHKBP1-227ENST00000602011 FANCAO15360 1455 aa29.47■■■□□ 2.31
SHKBP1-227ENST00000602011 TTC37Q6PGP7 1564 aa29.47■■■□□ 2.31
SHKBP1-227ENST00000602011 EHMT2Q96KQ7 1210 aa29.45■■■□□ 2.31
SHKBP1-227ENST00000602011 RIMS1Q86UR5 1692 aaKnown RBP29.44■■■□□ 2.3
SHKBP1-227ENST00000602011 PLPPR3Q6T4P5 718 aa29.44■■■□□ 2.3
SHKBP1-227ENST00000602011 CDK11AQ9UQ88 783 aaPredicted RBP29.43■■■□□ 2.3
SHKBP1-227ENST00000602011 CDK13Q14004 1512 aaKnown RBP29.43■■■□□ 2.3
SHKBP1-227ENST00000602011 PCF11O94913 1555 aaKnown RBP29.42■■■□□ 2.3
SHKBP1-227ENST00000602011 LMTK3Q96Q04 1460 aa29.42■■■□□ 2.3
SHKBP1-227ENST00000602011 FMN1Q68DA7 1419 aa29.41■■■□□ 2.3
SHKBP1-227ENST00000602011 FBXO41Q8TF61 875 aa29.41■■■□□ 2.3
SHKBP1-227ENST00000602011 YEATS2Q9ULM3 1422 aa29.4■■■□□ 2.3
SHKBP1-227ENST00000602011 SIGLEC1Q9BZZ2 1709 aa29.4■■■□□ 2.3
SHKBP1-227ENST00000602011 CHIC1Q5VXU3 224 aa29.39■■■□□ 2.3
SHKBP1-227ENST00000602011 CFAP74Q9C0B2 1584 aa29.37■■■□□ 2.29
SHKBP1-227ENST00000602011 HSPA2P54652 639 aa29.34■■■□□ 2.29
SHKBP1-227ENST00000602011 MLECQ14165 292 aa29.33■■■□□ 2.29
SHKBP1-227ENST00000602011 ZMYM4Q5VZL5 1548 aa29.33■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms