RNA–Protein interactions for RNA: ENST00000600910.5

PNKP-215, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5 BASIC

Gene PNKP, Length 1,600 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-215	ENST00000600910	OSCAR	Q8IYS5	282 aa		33.25	■■■□□ 2.91
PNKP-215	ENST00000600910	CTTNBP2	Q8WZ74	1663 aa		33.25	■■■□□ 2.91
PNKP-215	ENST00000600910	KIAA0586	Q9BVV6	1533 aa		33.21	■■■□□ 2.91
PNKP-215	ENST00000600910	CLASP1	Q7Z460	1538 aa		33.17	■■■□□ 2.9
PNKP-215	ENST00000600910	TNIK	Q9UKE5	1360 aa		33.17	■■■□□ 2.9
PNKP-215	ENST00000600910	IQGAP2	Q13576	1575 aa		33.16	■■■□□ 2.9
PNKP-215	ENST00000600910	RANGAP1	P46060	587 aa	Predicted RBP	33.02	■■■□□ 2.88
PNKP-215	ENST00000600910	JPH4	Q96JJ6	628 aa		33.02	■■■□□ 2.88
PNKP-215	ENST00000600910	SHROOM2	Q13796	1616 aa		33	■■■□□ 2.87
PNKP-215	ENST00000600910	UGGT2	Q9NYU1	1516 aa		32.98	■■■□□ 2.87
PNKP-215	ENST00000600910	CEP162	Q5TB80	1403 aa		32.92	■■■□□ 2.86
PNKP-215	ENST00000600910	PRG4	Q92954	1404 aa	Predicted RBP	32.9	■■■□□ 2.86
PNKP-215	ENST00000600910	CLIP1	P30622	1438 aa		32.88	■■■□□ 2.85
PNKP-215	ENST00000600910	DISP1	Q96F81	1524 aa		32.87	■■■□□ 2.85
PNKP-215	ENST00000600910	SAMD9	Q5K651	1589 aa		32.86	■■■□□ 2.85
PNKP-215	ENST00000600910	EFCAB5	A4FU69	1503 aa		32.85	■■■□□ 2.85
PNKP-215	ENST00000600910	CARMIL2	Q6F5E8	1435 aa		32.83	■■■□□ 2.85
PNKP-215	ENST00000600910	ARHGAP35	Q9NRY4	1499 aa		32.83	■■■□□ 2.85
PNKP-215	ENST00000600910	KIAA0556	O60303	1618 aa		32.83	■■■□□ 2.85
PNKP-215	ENST00000600910	ERCC6L2	Q5T890	1561 aa		32.83	■■■□□ 2.85
PNKP-215	ENST00000600910	P3H3	Q8IVL6	736 aa		32.8	■■■□□ 2.84
PNKP-215	ENST00000600910	FHOD3	Q2V2M9	1422 aa		32.73	■■■□□ 2.83
PNKP-215	ENST00000600910	ARHGEF11	O15085	1522 aa		32.73	■■■□□ 2.83
PNKP-215	ENST00000600910	ARAP1	Q96P48	1450 aa		32.7	■■■□□ 2.82
PNKP-215	ENST00000600910	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.65	■■■□□ 2.82
PNKP-215	ENST00000600910	RIMBP3C	A6NJZ7	1639 aa		32.65	■■■□□ 2.82
PNKP-215	ENST00000600910	RIMBP3B	A6NNM3	1639 aa		32.65	■■■□□ 2.82
PNKP-215	ENST00000600910	RIMBP3	Q9UFD9	1639 aa		32.65	■■■□□ 2.82
PNKP-215	ENST00000600910	PTPRG	P23470	1445 aa		32.6	■■■□□ 2.81
PNKP-215	ENST00000600910	DNAJC5	Q9H3Z4	198 aa		32.57	■■■□□ 2.8
PNKP-215	ENST00000600910	FMN1	Q68DA7	1419 aa		32.54	■■■□□ 2.8
PNKP-215	ENST00000600910	VPS8	Q8N3P4	1428 aa		32.46	■■■□□ 2.79
PNKP-215	ENST00000600910	PLB1	Q6P1J6	1458 aa		32.46	■■■□□ 2.79
PNKP-215	ENST00000600910	ABCA8	O94911	1581 aa		32.41	■■■□□ 2.78
PNKP-215	ENST00000600910	PCF11	O94913	1555 aa	Known RBP	32.41	■■■□□ 2.78
PNKP-215	ENST00000600910	UACA	Q9BZF9	1416 aa		32.41	■■■□□ 2.78
PNKP-215	ENST00000600910	CYB5RL	Q6IPT4	315 aa		32.4	■■■□□ 2.78
PNKP-215	ENST00000600910	RAPGEF6	Q8TEU7	1601 aa		32.4	■■■□□ 2.78
PNKP-215	ENST00000600910	CASKIN1	Q8WXD9	1431 aa		32.37	■■■□□ 2.77
PNKP-215	ENST00000600910	FYCO1	Q9BQS8	1478 aa		32.34	■■■□□ 2.77
PNKP-215	ENST00000600910	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.33	■■■□□ 2.77
PNKP-215	ENST00000600910	ABCC2	Q92887	1545 aa		32.33	■■■□□ 2.77
PNKP-215	ENST00000600910	UHRF1BP1L	A0JNW5	1464 aa		32.31	■■■□□ 2.76
PNKP-215	ENST00000600910	HECW1	Q76N89	1606 aa		32.31	■■■□□ 2.76
PNKP-215	ENST00000600910	ADCY10	Q96PN6	1610 aa		32.3	■■■□□ 2.76
PNKP-215	ENST00000600910	NUP153	P49790	1475 aa	Known RBP	32.3	■■■□□ 2.76
PNKP-215	ENST00000600910	ARID3C	A6NKF2	412 aa		32.24	■■■□□ 2.75
PNKP-215	ENST00000600910	LRRIQ1	Q96JM4	1722 aa		32.22	■■■□□ 2.75
PNKP-215	ENST00000600910	EPRS	P07814	1512 aa	Known RBP	32.2	■■■□□ 2.75
PNKP-215	ENST00000600910	CDK13	Q14004	1512 aa	Known RBP	32.17	■■■□□ 2.74
PNKP-215	ENST00000600910	KDM5B	Q9UGL1	1544 aa		32.17	■■■□□ 2.74
PNKP-215	ENST00000600910	ATP10B	O94823	1461 aa		32.17	■■■□□ 2.74
PNKP-215	ENST00000600910	CCDC18	Q5T9S5	1454 aa		32.15	■■■□□ 2.74
PNKP-215	ENST00000600910	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.13	■■■□□ 2.73
PNKP-215	ENST00000600910	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.12	■■■□□ 2.73
PNKP-215	ENST00000600910	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.12	■■■□□ 2.73
PNKP-215	ENST00000600910	NPM1	P06748	294 aa	Known RBP eCLIP	32.1	■■■□□ 2.73
PNKP-215	ENST00000600910	APLP2	Q06481	763 aa		32.1	■■■□□ 2.73
PNKP-215	ENST00000600910	TIAM1	Q13009	1591 aa		32.08	■■■□□ 2.73
PNKP-215	ENST00000600910	CFAP43	Q8NDM7	1665 aa		32.07	■■■□□ 2.72
PNKP-215	ENST00000600910	MAP3K1	Q13233	1512 aa		32.05	■■■□□ 2.72
PNKP-215	ENST00000600910	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.98	■■■□□ 2.71
PNKP-215	ENST00000600910	MAGI3	Q5TCQ9	1506 aa		31.96	■■■□□ 2.71
PNKP-215	ENST00000600910	PLEKHD1	A6NEE1	506 aa		31.95	■■■□□ 2.71
PNKP-215	ENST00000600910	KANK4	Q5T7N3	995 aa	Predicted RBP	31.94	■■■□□ 2.7
PNKP-215	ENST00000600910	ASXL2	Q76L83	1435 aa		31.94	■■■□□ 2.7
PNKP-215	ENST00000600910	LRRC9	Q6ZRR7	1453 aa		31.93	■■■□□ 2.7
PNKP-215	ENST00000600910	MAPKBP1	O60336	1514 aa		31.93	■■■□□ 2.7
PNKP-215	ENST00000600910	MTUS2	Q5JR59	1369 aa		31.92	■■■□□ 2.7
PNKP-215	ENST00000600910	WDR7	Q9Y4E6	1490 aa		31.9	■■■□□ 2.7
PNKP-215	ENST00000600910	TRO	Q12816	1431 aa	Predicted RBP	31.89	■■■□□ 2.7
PNKP-215	ENST00000600910	EHBP1L1	Q8N3D4	1523 aa		31.88	■■■□□ 2.69
PNKP-215	ENST00000600910	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.87	■■■□□ 2.69
PNKP-215	ENST00000600910	KCNH8	Q96L42	1107 aa		31.81	■■■□□ 2.68
PNKP-215	ENST00000600910	KIF14	Q15058	1648 aa		31.78	■■■□□ 2.68
PNKP-215	ENST00000600910	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.75	■■■□□ 2.67
PNKP-215	ENST00000600910	NCOA2	Q15596	1464 aa		31.71	■■■□□ 2.67
PNKP-215	ENST00000600910	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.69	■■■□□ 2.66
PNKP-215	ENST00000600910	ABCC10	Q5T3U5	1492 aa		31.69	■■■□□ 2.66
PNKP-215	ENST00000600910	DIP2B	Q9P265	1576 aa		31.68	■■■□□ 2.66
PNKP-215	ENST00000600910	TTC37	Q6PGP7	1564 aa		31.66	■■■□□ 2.66
PNKP-215	ENST00000600910	ABCA9	Q8IUA7	1624 aa		31.64	■■■□□ 2.66
PNKP-215	ENST00000600910	FAM69C	Q0P6D2	419 aa		31.62	■■■□□ 2.65
PNKP-215	ENST00000600910	GLI2	P10070	1586 aa		31.62	■■■□□ 2.65
PNKP-215	ENST00000600910	PHLDB1	Q86UU1	1377 aa		31.59	■■■□□ 2.65
PNKP-215	ENST00000600910	CCNB3	Q8WWL7	1395 aa		31.59	■■■□□ 2.65
PNKP-215	ENST00000600910	KIF13A	Q9H1H9	1805 aa		31.58	■■■□□ 2.65
PNKP-215	ENST00000600910	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.55	■■■□□ 2.64
PNKP-215	ENST00000600910	CDC42BPA	Q5VT25	1732 aa		31.54	■■■□□ 2.64
PNKP-215	ENST00000600910	MYO5C	Q9NQX4	1742 aa		31.54	■■■□□ 2.64
PNKP-215	ENST00000600910	MAP3K4	Q9Y6R4	1608 aa		31.53	■■■□□ 2.64
PNKP-215	ENST00000600910	MYOM3	Q5VTT5	1437 aa		31.52	■■■□□ 2.64
PNKP-215	ENST00000600910	CD109	Q6YHK3	1445 aa		31.52	■■■□□ 2.64
PNKP-215	ENST00000600910	ITSN2	Q9NZM3	1697 aa		31.5	■■■□□ 2.63
PNKP-215	ENST00000600910	PREX2	Q70Z35	1606 aa		31.5	■■■□□ 2.63
PNKP-215	ENST00000600910	TRH	P20396	242 aa	Predicted RBP	31.49	■■■□□ 2.63
PNKP-215	ENST00000600910	PLCH2	O75038	1416 aa		31.49	■■■□□ 2.63
PNKP-215	ENST00000600910	CDC42BPB	Q9Y5S2	1711 aa		31.47	■■■□□ 2.63
PNKP-215	ENST00000600910	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.45	■■■□□ 2.62
PNKP-215	ENST00000600910	ARHGAP5	Q13017	1502 aa		31.44	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms