RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144	IGF1R	P08069	1367 aa		33.89	■■■■□ 3.02
IRF3-222	ENST00000599144	KIF13A	Q9H1H9	1805 aa		33.84	■■■■□ 3.01
IRF3-222	ENST00000599144	FAM69C	Q0P6D2	419 aa		33.84	■■■■□ 3.01
IRF3-222	ENST00000599144	KIF27	Q86VH2	1401 aa		33.81	■■■■□ 3
IRF3-222	ENST00000599144	NPM1	P06748	294 aa	Known RBP eCLIP	33.8	■■■■□ 3
IRF3-222	ENST00000599144	KIAA0586	Q9BVV6	1533 aa		33.79	■■■■□ 3
IRF3-222	ENST00000599144	ABCC10	Q5T3U5	1492 aa		33.76	■■■□□ 2.99
IRF3-222	ENST00000599144	ADCY10	Q96PN6	1610 aa		33.75	■■■□□ 2.99
IRF3-222	ENST00000599144	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.75	■■■□□ 2.99
IRF3-222	ENST00000599144	MAPKBP1	O60336	1514 aa		33.69	■■■□□ 2.98
IRF3-222	ENST00000599144	CUL7	Q14999	1698 aa		33.67	■■■□□ 2.98
IRF3-222	ENST00000599144	DIP2B	Q9P265	1576 aa		33.65	■■■□□ 2.98
IRF3-222	ENST00000599144	CARMIL1	Q5VZK9	1371 aa		33.65	■■■□□ 2.98
IRF3-222	ENST00000599144	PTPRG	P23470	1445 aa		33.58	■■■□□ 2.97
IRF3-222	ENST00000599144	TNIK	Q9UKE5	1360 aa		33.47	■■■□□ 2.95
IRF3-222	ENST00000599144	CARMIL2	Q6F5E8	1435 aa		33.45	■■■□□ 2.94
IRF3-222	ENST00000599144	KDM6B	O15054	1643 aa		33.42	■■■□□ 2.94
IRF3-222	ENST00000599144	TSPOAP1	O95153	1857 aa		33.4	■■■□□ 2.94
IRF3-222	ENST00000599144	IQGAP2	Q13576	1575 aa		33.4	■■■□□ 2.94
IRF3-222	ENST00000599144	ABCC2	Q92887	1545 aa		33.38	■■■□□ 2.93
IRF3-222	ENST00000599144	ASXL2	Q76L83	1435 aa		33.36	■■■□□ 2.93
IRF3-222	ENST00000599144	DISP1	Q96F81	1524 aa		33.34	■■■□□ 2.93
IRF3-222	ENST00000599144	KDM4F	A0A1W2PPD8	638 aa		33.33	■■■□□ 2.93
IRF3-222	ENST00000599144	UACA	Q9BZF9	1416 aa		33.29	■■■□□ 2.92
IRF3-222	ENST00000599144	RAPGEF2	Q9Y4G8	1499 aa		33.27	■■■□□ 2.92
IRF3-222	ENST00000599144	UHRF1BP1L	A0JNW5	1464 aa		33.25	■■■□□ 2.91
IRF3-222	ENST00000599144	PLB1	Q6P1J6	1458 aa		33.25	■■■□□ 2.91
IRF3-222	ENST00000599144	UGGT2	Q9NYU1	1516 aa		33.19	■■■□□ 2.9
IRF3-222	ENST00000599144	GLI2	P10070	1586 aa		33.17	■■■□□ 2.9
IRF3-222	ENST00000599144	PPRC1	Q5VV67	1664 aa	Known RBP	33.17	■■■□□ 2.9
IRF3-222	ENST00000599144	KIAA0556	O60303	1618 aa		33.13	■■■□□ 2.89
IRF3-222	ENST00000599144	KDM5B	Q9UGL1	1544 aa		33.13	■■■□□ 2.89
IRF3-222	ENST00000599144	EPRS	P07814	1512 aa	Known RBP	33.12	■■■□□ 2.89
IRF3-222	ENST00000599144	COL17A1	Q9UMD9	1497 aa	Predicted RBP	33.11	■■■□□ 2.89
IRF3-222	ENST00000599144	ZCCHC11	Q5TAX3	1644 aa	Known RBP	33.06	■■■□□ 2.88
IRF3-222	ENST00000599144	MAP3K4	Q9Y6R4	1608 aa		32.99	■■■□□ 2.87
IRF3-222	ENST00000599144	ADGRL1	O94910	1474 aa		32.95	■■■□□ 2.87
IRF3-222	ENST00000599144	WDR7	Q9Y4E6	1490 aa		32.94	■■■□□ 2.86
IRF3-222	ENST00000599144	KCNH8	Q96L42	1107 aa		32.91	■■■□□ 2.86
IRF3-222	ENST00000599144	TEX14	Q8IWB6	1497 aa		32.91	■■■□□ 2.86
IRF3-222	ENST00000599144	CTTNBP2	Q8WZ74	1663 aa		32.89	■■■□□ 2.86
IRF3-222	ENST00000599144	PRX	Q9BXM0	1461 aa		32.88	■■■□□ 2.85
IRF3-222	ENST00000599144	ARID3C	A6NKF2	412 aa		32.88	■■■□□ 2.85
IRF3-222	ENST00000599144	GOLGA3	Q08378	1498 aa		32.86	■■■□□ 2.85
IRF3-222	ENST00000599144	ABCA8	O94911	1581 aa		32.85	■■■□□ 2.85
IRF3-222	ENST00000599144	P3H3	Q8IVL6	736 aa		32.85	■■■□□ 2.85
IRF3-222	ENST00000599144	CD109	Q6YHK3	1445 aa		32.8	■■■□□ 2.84
IRF3-222	ENST00000599144	MAGI3	Q5TCQ9	1506 aa		32.72	■■■□□ 2.83
IRF3-222	ENST00000599144	CFAP43	Q8NDM7	1665 aa		32.65	■■■□□ 2.82
IRF3-222	ENST00000599144	ATP10B	O94823	1461 aa		32.63	■■■□□ 2.81
IRF3-222	ENST00000599144	RANGAP1	P46060	587 aa	Predicted RBP	32.61	■■■□□ 2.81
IRF3-222	ENST00000599144	CSRNP3	Q8WYN3	585 aa		32.61	■■■□□ 2.81
IRF3-222	ENST00000599144	ILDR1	Q86SU0	546 aa	Predicted RBP	32.59	■■■□□ 2.81
IRF3-222	ENST00000599144	HECW2	Q9P2P5	1572 aa		32.55	■■■□□ 2.8
IRF3-222	ENST00000599144	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.52	■■■□□ 2.8
IRF3-222	ENST00000599144	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.51	■■■□□ 2.79
IRF3-222	ENST00000599144	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.51	■■■□□ 2.79
IRF3-222	ENST00000599144	SAMD9	Q5K651	1589 aa		32.49	■■■□□ 2.79
IRF3-222	ENST00000599144	KIF21B	O75037	1637 aa		32.48	■■■□□ 2.79
IRF3-222	ENST00000599144	ARAP3	Q8WWN8	1544 aa		32.46	■■■□□ 2.79
IRF3-222	ENST00000599144	RAPGEF3	O95398	923 aa		32.45	■■■□□ 2.79
IRF3-222	ENST00000599144	RAPGEF6	Q8TEU7	1601 aa		32.43	■■■□□ 2.78
IRF3-222	ENST00000599144	FHOD3	Q2V2M9	1422 aa		32.43	■■■□□ 2.78
IRF3-222	ENST00000599144	ABCA9	Q8IUA7	1624 aa		32.4	■■■□□ 2.78
IRF3-222	ENST00000599144	NUP153	P49790	1475 aa	Known RBP	32.39	■■■□□ 2.78
IRF3-222	ENST00000599144	PHLDB1	Q86UU1	1377 aa		32.29	■■■□□ 2.76
IRF3-222	ENST00000599144	EHMT2	Q96KQ7	1210 aa		32.28	■■■□□ 2.76
IRF3-222	ENST00000599144	NEO1	Q92859	1461 aa		32.28	■■■□□ 2.76
IRF3-222	ENST00000599144	EEA1	Q15075	1411 aa		32.26	■■■□□ 2.76
IRF3-222	ENST00000599144	FRMPD1	Q5SYB0	1578 aa		32.25	■■■□□ 2.75
IRF3-222	ENST00000599144	PLEKHD1	A6NEE1	506 aa		32.22	■■■□□ 2.75
IRF3-222	ENST00000599144	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.22	■■■□□ 2.75
IRF3-222	ENST00000599144	PTPRM	P28827	1452 aa		32.2	■■■□□ 2.75
IRF3-222	ENST00000599144	ADAMTSL3	P82987	1691 aa		32.17	■■■□□ 2.74
IRF3-222	ENST00000599144	AKNA	Q7Z591	1439 aa		32.12	■■■□□ 2.73
IRF3-222	ENST00000599144	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.11	■■■□□ 2.73	3e-7	■□□□□ 11.1
IRF3-222	ENST00000599144	DENND4B	O75064	1496 aa	Predicted RBP	32.11	■■■□□ 2.73
IRF3-222	ENST00000599144	CDK13	Q14004	1512 aa	Known RBP	32.1	■■■□□ 2.73
IRF3-222	ENST00000599144	FANCA	O15360	1455 aa		32.1	■■■□□ 2.73
IRF3-222	ENST00000599144	MADD	Q8WXG6	1647 aa		32.08	■■■□□ 2.73
IRF3-222	ENST00000599144	TTC37	Q6PGP7	1564 aa		32.07	■■■□□ 2.72
IRF3-222	ENST00000599144	EFCAB5	A4FU69	1503 aa		32.07	■■■□□ 2.72
IRF3-222	ENST00000599144	BCORL1	Q5H9F3	1711 aa		32.07	■■■□□ 2.72
IRF3-222	ENST00000599144	PLPPR3	Q6T4P5	718 aa		32.06	■■■□□ 2.72
IRF3-222	ENST00000599144	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.05	■■■□□ 2.72
IRF3-222	ENST00000599144	ARHGEF40	Q8TER5	1519 aa		32.05	■■■□□ 2.72
IRF3-222	ENST00000599144	YEATS2	Q9ULM3	1422 aa		32.01	■■■□□ 2.72
IRF3-222	ENST00000599144	UBTF	P17480	764 aa	Known RBP	32.01	■■■□□ 2.71
IRF3-222	ENST00000599144	RICTOR	Q6R327	1708 aa		32	■■■□□ 2.71
IRF3-222	ENST00000599144	MLEC	Q14165	292 aa		31.95	■■■□□ 2.71
IRF3-222	ENST00000599144	RIMS1	Q86UR5	1692 aa	Known RBP	31.94	■■■□□ 2.7
IRF3-222	ENST00000599144	LMTK3	Q96Q04	1460 aa		31.93	■■■□□ 2.7
IRF3-222	ENST00000599144	CFAP74	Q9C0B2	1584 aa		31.93	■■■□□ 2.7
IRF3-222	ENST00000599144	ZFYVE16	Q7Z3T8	1539 aa		31.92	■■■□□ 2.7
IRF3-222	ENST00000599144	PCF11	O94913	1555 aa	Known RBP	31.92	■■■□□ 2.7
IRF3-222	ENST00000599144	SIGLEC1	Q9BZZ2	1709 aa		31.92	■■■□□ 2.7
IRF3-222	ENST00000599144	SCAPER	Q9BY12	1400 aa		31.92	■■■□□ 2.7
IRF3-222	ENST00000599144	HSPA2	P54652	639 aa		31.9	■■■□□ 2.7
IRF3-222	ENST00000599144	PLCH2	O75038	1416 aa		31.9	■■■□□ 2.7
IRF3-222	ENST00000599144	ARHGAP35	Q9NRY4	1499 aa		31.9	■■■□□ 2.7

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms